Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: sra

https://packages.ecosyste.ms/registries/pypi.org/packages/sra

A simple deploy tool
13 versions
Latest release: almost 8 years ago
35 downloads last month

Papers Mentioning sra 14

10.1038/s41598-020-67753-5
Quiescent stem cell marker genes in glioma gene networks are sufficient to distinguish between normal and glioblastoma (GBM) samples
Cited by: 13
Author(s): Shradha Mukherjee
Software Mentions: 14
Published: over 4 years ago
10.1002/1878-0261.12381
A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc <scp>RNA</scp> s
Cited by: 19
Author(s): Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li
Software Mentions: 8
Published: about 6 years ago
10.1186/1745-6150-6-51
Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
Cited by: 12
Author(s): Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli
Software Mentions: 6
Published: almost 14 years ago
10.1186/s12864-019-6131-1
Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies
Cited by: 19
Author(s): Linda Beauclair, Christelle Ramé, Peter Arensburger, Benoît Piégu, Florian Guillou, Joëlle Dupont, Yves Bigot
Software Mentions: 4
Published: about 5 years ago
10.12688/f1000research.25540.1
Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification
Cited by: 2
Author(s): Linto Antony, Gavin Fenske, Radhey S. Kaushik, T. G. Nagaraja, M. G. Thomas, Joy Scaria
Software Mentions: 4
Published: about 4 years ago
10.1038/sdata.2014.45
Long-read, whole-genome shotgun sequence data for five model organisms
Cited by: 130
Author(s): Kristi E Kim, Paul Peluso, Primo Babayan, P. Jane Yeadon, Charles Yu, William W. Fisher, Chen-Shan Chin, Nicole A Rapicavoli, David R. Rank, Joaquim Li, David Catcheside, S Celniker, Adam M. Phillippy, Casey M. Bergman, Jane M. Landolin
Software Mentions: 4
Published: almost 10 years ago
10.1186/s12862-016-0657-5
Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence
Cited by: 12
Author(s): Cencen Li, Xiao Wang, Huimin Cai, Yuhua Fu, Yu Luan, Wen Wang, Hui Xiang, Changchun Li
Software Mentions: 3
Published: over 8 years ago
10.1186/s40168-021-01064-3
Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank
Cited by: 465
Author(s): Chang Liu, Meng‐Xuan Du, Rexiding Abuduaini, Haiying Yu, Dan‐Hua Li, Yujing Wang, Nan Zhou, Min-Zhi Jiang, Ping Niu, Shanshan Han, Hong-He Chen, Wenyu Shi, Linhuan Wu, Yu‐Hua Xin, Juncai Ma, Yu‐Guang Zhou, Cheng‐Ying Jiang, Hongwei Liu, Shuang‐Jiang Liu
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pgen.1007156
Regulation of circadian clock transcriptional output by CLOCK:BMAL1
Cited by: 112
Author(s): Alexandra J. Trott, Jérôme S. Menet
Software Mentions: 3
Published: almost 7 years ago
10.3389/fgene.2014.00198
Estimating directional epistasis
Cited by: 19
Author(s): Arnaud Le Rouzic
Software Mentions: 3
Published: over 10 years ago
10.7554/eLife.64474
Robo recruitment of the Wave regulatory complex plays an essential and conserved role in midline repulsion
Cited by: 12
Author(s): Karina Chaudhari, Madhavi Gorla, Chao Chang, Artur Kania, Greg J. Bashaw
Software Mentions: 2
Published: over 3 years ago
10.1099/mgen.0.000275
Endemic fluoroquinolone-resistant Salmonella enterica serovar Kentucky ST198 in northern India
Cited by: 18
Author(s): Jaspreet Mahindroo, Duy Pham Thanh, To Nguyen Thi Nguyen, Balvinder Mohan, Siddhartha Thakur, Stephen Baker, Neelam Taneja
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-016-2854-4
Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization
Cited by: 5
Author(s): Mikael-Jonathan Luce, Anna Akuvi Akpawu, Daniel C. Tucunduva, Spencer Mason, Michelle S. Scott
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0083689
A Western Diet Ecological Module Identified from the ‘Humanized’ Mouse Microbiota Predicts Diet in Adults and Formula Feeding in Children
Cited by: 13
Author(s): Jay Siddharth, Nicholas Holway, Scott J. Parkinson
Software Mentions: 2
Published: almost 11 years ago