Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: sra

https://packages.ecosyste.ms/registries/pypi.org/packages/sra

A simple deploy tool
13 versions
Latest release: over 7 years ago
35 downloads last month

Papers Mentioning sra 14

Quiescent stem cell marker genes in glioma gene networks are sufficient to distinguish between normal and glioblastoma (GBM) samples
Cited by: 13
Author(s): Shradha Mukherjee
Software Mentions: 14
Published: over 4 years ago

10.1002/1878-0261.12381

A pan‐cancer atlas of cancer hallmark‐associated candidate driver lnc <scp>RNA</scp> s
Cited by: 19
Author(s): Yulan Deng, Shangyi Luo, Xinxin Zhang, Chaoxia Zou, Huating Yuan, Gaoming Liao, Liwen Xu, Chunyu Deng, Yujia Lan, Tingting Zhao, Xu Gao, Yun Xiao, Xia Li
Software Mentions: 8
Published: about 6 years ago

10.1186/1745-6150-6-51

Fish the ChIPs: a pipeline for automated genomic annotation of ChIP-Seq data
Cited by: 12
Author(s): Iros Barozzi, Alberto Termanini, Saverio Minucci, Gioacchino Natoli
Software Mentions: 6
Published: almost 14 years ago

10.1186/s12864-019-6131-1

Sequence properties of certain GC rich avian genes, their origins and absence from genome assemblies: case studies
Cited by: 19
Author(s): Linda Beauclair, Christelle Ramé, Peter Arensburger, Benoît Piégu, Florian Guillou, Joëlle Dupont, Yves Bigot
Software Mentions: 4
Published: about 5 years ago

10.12688/f1000research.25540.1

Population structure of Salmonella enterica serotype Mbandaka reveals similar virulence potential irrespective of source and phylogenomic stratification
Cited by: 2
Author(s): Linto Antony, Gavin Fenske, Radhey S. Kaushik, T. G. Nagaraja, M. G. Thomas, Joy Scaria
Software Mentions: 4
Published: about 4 years ago

10.1038/sdata.2014.45

Long-read, whole-genome shotgun sequence data for five model organisms
Cited by: 130
Author(s): Kristi E Kim, Paul Peluso, Primo Babayan, P. Jane Yeadon, Charles Yu, William W. Fisher, Chen-Shan Chin, Nicole A Rapicavoli, David R. Rank, Joaquim Li, David Catcheside, S Celniker, Adam M. Phillippy, Casey M. Bergman, Jane M. Landolin
Software Mentions: 4
Published: almost 10 years ago

10.1186/s12862-016-0657-5

Molecular microevolution and epigenetic patterns of the long non-coding gene H19 show its potential function in pig domestication and breed divergence
Cited by: 12
Author(s): Cencen Li, Xiao Wang, Huimin Cai, Yuhua Fu, Yu Luan, Wen Wang, Hui Xiang, Changchun Li
Software Mentions: 3
Published: over 8 years ago

10.1186/s40168-021-01064-3

Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank
Cited by: 465
Author(s): Chang Liu, Meng‐Xuan Du, Rexiding Abuduaini, Haiying Yu, Dan‐Hua Li, Yujing Wang, Nan Zhou, Min-Zhi Jiang, Ping Niu, Shanshan Han, Hong-He Chen, Wenyu Shi, Linhuan Wu, Yu‐Hua Xin, Juncai Ma, Yu‐Guang Zhou, Cheng‐Ying Jiang, Hongwei Liu, Shuang‐Jiang Liu
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pgen.1007156

Regulation of circadian clock transcriptional output by CLOCK:BMAL1
Cited by: 112
Author(s): Alexandra J. Trott, Jérôme S. Menet
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2014.00198

Estimating directional epistasis
Cited by: 19
Author(s): Arnaud Le Rouzic
Software Mentions: 3
Published: over 10 years ago

10.7554/eLife.64474

Robo recruitment of the Wave regulatory complex plays an essential and conserved role in midline repulsion
Cited by: 12
Author(s): Karina Chaudhari, Madhavi Gorla, Chao Chang, Artur Kania, Greg J. Bashaw
Software Mentions: 2
Published: over 3 years ago

10.1099/mgen.0.000275

Endemic fluoroquinolone-resistant Salmonella enterica serovar Kentucky ST198 in northern India
Cited by: 18
Author(s): Jaspreet Mahindroo, Duy Pham Thanh, To Nguyen Thi Nguyen, Balvinder Mohan, Siddhartha Thakur, Stephen Baker, Neelam Taneja
Software Mentions: 2
Published: over 5 years ago

10.1186/s12864-016-2854-4

Extent of pre-translational regulation for the control of nucleocytoplasmic protein localization
Cited by: 5
Author(s): Mikael-Jonathan Luce, Anna Akuvi Akpawu, Daniel C. Tucunduva, Spencer Mason, Michelle S. Scott
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0083689

A Western Diet Ecological Module Identified from the ‘Humanized’ Mouse Microbiota Predicts Diet in Adults and Formula Feeding in Children
Cited by: 13
Author(s): Jay Siddharth, Nicholas Holway, Scott J. Parkinson
Software Mentions: 2
Published: almost 11 years ago