pypi: flash | Projects | Ecosyste.ms: Papers

10.1186/s13059-021-02349-4

PEPPRO: quality control and processing of nascent RNA profiling data
Cited by: 14
Author(s): Jason P. Smith, Arun B. Dutta, Kizhakke Mattada Sathyan, Michael J. Guertin, Nathan C. Sheffield
Software Mentions: 14
Published: over 3 years ago

10.1186/s40168-021-01012-1

Much ado about nothing? Off-target amplification can lead to false-positive bacterial brain microbiome detection in healthy and Parkinson’s disease individuals
Cited by: 25
Author(s): Janis R. Bedarf, Naiara Beraza, Hassan Khazneh, Ezgi Özkurt, David Baker, Valeri Borger, Ullrich Wüllner, Falk Hildebrand
Software Mentions: 7
Published: over 3 years ago

10.1002/1873-3468.13278

The gut microbiome participates in transgenerational inheritance of low‐temperature responses in <i>Drosophila melanogaster</i>
Cited by: 23
Author(s): Aman Zare, Anna-Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg
Software Mentions: 7
Published: about 6 years ago

10.1111/1751-7915.13450

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas
Cited by: 47
Author(s): Huan Li, Rui Zhou, Jun Zhu, Xiaodan Huang, Jiapeng Qu
Software Mentions: 6
Published: over 5 years ago

10.1111/1751-7915.13485

Faecal microbiota and functional capacity associated with weaning weight in meat rabbits
Cited by: 19
Author(s): Shouguo Fang, Xuan Chen, Liwen Zhou, Chongchong Wang, Qiaohui Chen, Ruiyi Lin, Tianfang Xiao, Qianfu Gan
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0057190

The Poultry-Associated Microbiome: Network Analysis and Farm-to-Fork Characterizations
Cited by: 103
Author(s): Brian B. Oakley, Cesar A. Morales, J. Eric Line, M. E. Berrang, Richard J. Meinersmann, Glenn E. Tillman, Mark G. Wise, Gregory R. Siragusa, Kelli L. Hiett, Bruce S. Seal
Software Mentions: 5
Published: over 11 years ago

10.1111/1751-7915.13496

Preventive antibiotic treatment of calves: emergence of dysbiosis causing propagation of obese state‐associated and mobile multidrug resistance‐carrying bacteria
Cited by: 15
Author(s): Dorota A. Dobrzanska, Matthew T F Lamaudière, Jess Rollason, Lauren Acton, Michael Duncan, Sharon Compton, John Simms, Gareth D. Weedall, Igor Y. Morozov
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000465

Resident microbial communities inhibit growth and antibiotic-resistance evolution of Escherichia coli in human gut microbiome samples
Cited by: 45
Author(s): Michael Baumgärtner, Florian Bayer, Katia R. Pfrunder‐Cardozo, Angus Buckling, Alex R. Hall
Software Mentions: 4
Published: over 4 years ago

10.12688/f1000research.11146.2

De novo whole-genome assembly of a wild type yeast isolate using nanopore sequencing
Cited by: 5
Author(s): Michael Liem, Hans J. Jansen, Ron P. Dirks, Christiaan V. Henkel, G. Paul H. van Heusden, Richard J.L.F. Lemmers, Trifa Omer, Shuai Shao, Peter J. Punt, Herman P. Spaink
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.3000106

A census-based estimate of Earth's bacterial and archaeal diversity
Cited by: 124
Author(s): Stilianos Louca, Florent Mazel, Michael Doebeli, Laura Wegener Parfrey
Software Mentions: 4
Published: almost 6 years ago

10.1155/2008/789026

NCR-PCOPGene: An Exploratory Tool for Analysis of Sample-Classes Effect on Gene-Expression Relationships
Cited by: 2
Author(s): Juan Cedano, Mario Huerta, Enrique Querol
Software Mentions: 3
Published: almost 16 years ago

10.1186/1471-2105-10-138

PCOPGene-Net: Holistic Characterisation of cellular states from microarray data based on continuous and non-continuous analysis of gene-expression relationships
Cited by: 4
Author(s): Mario Huerta, Juan Cedano, Darío Yesid Peña Ballesteros, A. Laborda Rodríguez, Enrique Querol
Software Mentions: 3
Published: over 15 years ago

10.1186/s40168-018-0420-9

Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
Cited by: 428
Author(s): Stilianos Louca, Michael Doebeli, Laura Wegener Parfrey
Software Mentions: 3
Published: over 6 years ago

10.1186/s12957-021-02333-z

Identification of uterine leiomyosarcoma-associated hub genes and immune cell infiltration pattern using weighted co-expression network analysis and CIBERSORT algorithm
Cited by: 12
Author(s): Xiaoyun Shen, Zhujuan Yang, Sheng Feng, Yi Li
Software Mentions: 3
Published: over 3 years ago

10.3390/genes12020144

Ancient DNA from the Asiatic Wild Dog (Cuon alpinus) from Europe
Cited by: 5
Author(s): Ulrike H. Taron, Johanna L. A. Paijmans, Axel Barlow, Michaela Preick, Arati Iyengar, Virgil Drăgușin, Ştefan Vasile, Adrian Marciszak, Martina Roblíčková, Michael Hofreiter
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-020-67798-6

The earliest domestic cat on the Silk Road
Cited by: 8
Author(s): Ashleigh Haruda, Alicia R. Ventresca Miller, Johanna L. A. Paijmans, Axel Barlow, Azilkhan Tazhekeyev, С. Билалов, Y Hesse, Michaela Preick, Turi King, Richard M. Thomas, Heinrich Härke, Ирина Аржанцева
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.ppat.1007903

Stable integrant-specific differences in bimodal HIV-1 expression patterns revealed by high-throughput analysis
Cited by: 5
Author(s): David F. Read, Edmond Atindaana, Kalyani Pyaram, Feng Yang, Sarah B. Emery, Anna Cheong, Katherine R. Nakama, Cleo Burnett, Erin T. Larragoite, Emilie Battivelli, Eric Verdin, Vicente Planelles, Ching-Pin Chang, Alice Telesnitsky, Jeffrey M. Kidd
Software Mentions: 2
Published: about 5 years ago

10.3389/fmicb.2019.01262

Single Cell Genomics-Based Analysis of Gene Content and Expression of Prophages in a Diffuse-Flow Deep-Sea Hydrothermal System
Cited by: 14
Author(s): Jessica M. Labonté, Maria Pachiadaki, Elizabeth A. Fergusson, Jesse McNichol, Ashley Grosche, Lara K. Gulmann, Costantino Vetriani, Stefan M. Sievert, Ramunas Stepanauskas
Software Mentions: 2
Published: over 5 years ago

10.1186/s12876-021-01714-8

Plasma cell free DNA methylation markers for hepatocellular carcinoma surveillance in patients with cirrhosis: a case control study
Cited by: 11
Author(s): Jörn Lewin, Denise Kottwitz, Johanna Aoyama, Theo deVos, J. Garces, Oliver Hasinger, Stefanie Kasielke, Florian Knaust, Preeti Rathi, Sebastian Rausch, Günter Weiß, Alexander Zipprich, Edward Mena, Tse‐Ling Fong
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2018.03169

Dynamics of Bacterial Communities Mediating the Treatment of an As-Rich Acid Mine Drainage in a Field Pilot
Cited by: 23
Author(s): Elia Laroche, Corinne Casiot, Lídia Fernández-Rojo, Angélique Desoeuvre, Vincent Tardy, Odile Bruneel, Fabienne Battaglia-Brunet, Catherine Joulian, Marina Héry
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12903-018-0693-1

Comparison of the salivary and dentinal microbiome of children with severe-early childhood caries to the salivary microbiome of caries-free children
Cited by: 85
Author(s): Eimear Hurley, Maurice P. J. Barrett, M J Kinirons, Helen Whelton, C. Anthony Ryan, Catherine Stanton, Hugh M. B. Harris, Paul W. O’Toole
Software Mentions: 1
Published: almost 6 years ago

10.1111/jam.14304

Gut microbiota of newborn piglets with intrauterine growth restriction have lower diversity and different taxonomic abundances
Cited by: 57
Author(s): W. Zhang, Cui Ma, Ping Xie, Qian Zhu, X. Wang, Yulong Yin, Xiangfeng Kong
Software Mentions: 1
Published: over 5 years ago

10.1155/2019/6081248

The Gut Microbiota in Women Suffering from Gestational Diabetes Mellitus with the Failure of Glycemic Control by Lifestyle Modification
Cited by: 41
Author(s): Guangyong Ye, long Zhang, Min Wang, Yunbo Chen, Silan Gu, Keyi Wang, Jinhua Leng, Yuantao Gu, Xinyou Xie
Software Mentions: 1
Published: about 5 years ago

Ecosyste.ms: Papers

Projects: pypi: flash

Papers Mentioning flash 23