Papers: 10.1186/s13059-021-02349-4
https://doi.org/10.1186/s13059-021-02349-4
PEPPRO: quality control and processing of nascent RNA profiling data
Cited by: 14
Author(s): Jason P. Smith, Arun B. Dutta, Kizhakke Mattada Sathyan, Michael J. Guertin, Nathan C. Sheffield
Published: about 4 years ago
Software Mentions 14
Very Likely Science (60)
Very Likely Science (100)
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing readsPapers that mentioned: 1,562
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pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.Papers that mentioned: 848
Very Likely Science (80)
Very Likely Science (65)
Very Likely Science (65)
pypi: looper
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.Papers that mentioned: 2
Very Likely Science (100)
Very Likely Science (100)
pypi: pandas
Powerful data structures for data analysis, time series, and statisticsPapers that mentioned: 640
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (65)
Very Likely Science (65)
pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta filePapers that mentioned: 3
Very Likely Science (80)
Very Likely Science (65)