Ecosyste.ms: Papers

10.1186/s13059-021-02349-4

PEPPRO: quality control and processing of nascent RNA profiling data
Cited by: 14
Author(s): Jason P. Smith, Arun B. Dutta, Kizhakke Mattada Sathyan, Michael J. Guertin, Nathan C. Sheffield
Software Mentions: 14
Published: over 3 years ago

10.3389/fninf.2020.00027

NWB Query Engines: Tools to Search Data Stored in Neurodata Without Borders Format
Cited by: 2
Author(s): Petr Ježek, Jeffery L. Teeters, Friedrich T. Sommer
Software Mentions: 9
Published: about 4 years ago

10.3390/pathogens9120997

A Paradox in Bacterial Pathogenesis: Activation of the Local Macrophage Inflammasome Is Required for Virulence of Streptococcus uberis
Cited by: 10
Author(s): Nathan Archer, Sharon A. Egan, Tracey J. Coffey, Richard D. Emes, Maria Filippa Addis, Philip N. Ward, Adam Blanchard, James A. Leigh
Software Mentions: 5
Published: almost 4 years ago

10.1093/gigascience/giab033

BiSulfite Bolt: A bisulfite sequencing analysis platform
Cited by: 21
Author(s): Colin Farrell, Michael J. Thompson, Anela Tosevska, Adewale Oyetunde, Matteo Pellegrini
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-015-1983-5

Identification of the meiotic toolkit in diatoms and exploration of meiosis-specific SPO11 and RAD51 homologs in the sexual species Pseudo-nitzschia multistriata and Seminavis robusta
Cited by: 49
Author(s): Shrikant Patil, Sara Moeys, Peter von Dassow, Marie J. J. Huysman, Daniel Mapleson, Lieven De Veylder, Remo Sanges, Wim Vyverman, Marina Montresor, Maria Immacolata Ferrante
Software Mentions: 3
Published: almost 9 years ago

10.1186/s12859-018-2051-3

FMLRC: Hybrid long read error correction using an FM-index
Cited by: 93
Author(s): Jeremy Wang, James Holt, Leonard McMillan, Corbin D. Jones
Software Mentions: 2
Published: over 6 years ago

10.15252/embr.201744226

Type VI secretion system MIX‐effectors carry both antibacterial and anti‐eukaryotic activities
Cited by: 43
Author(s): Ann Ray, Nika Schwartz, Marcela de Souza Santos, Junmei Zhang, Kim Orth, Dor Salomon
Software Mentions: 2
Published: about 7 years ago

10.1534/g3.120.401434

Single-Molecule Real-Time Transcript Sequencing of Turnips Unveiling the Complexity of the Turnip Transcriptome
Cited by: 1
Author(s): Hongmei Zhuang, Qiang Wang, Hongwei Han, Huifang Liu, Hao Wang
Software Mentions: 2
Published: almost 4 years ago

10.3390/molecules25020285

Synthesis, X-ray Characterization and Density Functional Theory (DFT) Studies of Two Polymorphs of the α,α,α,α, Isomer of Tetra-p-Iodophenyl Tetramethyl Calix[4]pyrrole: On the Importance of Halogen Bonds
Cited by: 3
Author(s): Dragoș Dăbuleanu, Antonio Bauzá, Joaqúın Ortega-Castro, Eduardo C. Escudero‐Adán, Pedro J. Ballester, Antonio Frontera
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.ppat.1005128

Type VI Secretion System Toxins Horizontally Shared between Marine Bacteria
Cited by: 66
Author(s): Dor Salomon, John A. Klimko, David C. Trudgian, Lisa N. Kinch, Nick V. Grishin, Hamid Mirzaei, Kim Orth
Software Mentions: 1
Published: about 9 years ago

10.1098/rsos.140540

The missing metric: quantifying contributions of reviewers
Cited by: 17
Author(s): Maurício Cantor, Shane Gero
Software Mentions: 1
Published: over 9 years ago