Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: refgenie
https://packages.ecosyste.ms/registries/pypi.org/packages/refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
25 versions
Latest release: about 3 years ago
1 dependent package
9,261 downloads last month
Papers Mentioning refgenie 3
10.1186/s13148-021-01173-8
Histone H3 lysine 27 acetylation profile undergoes two global shifts in undernourished children and suggests altered one-carbon metabolismCited by: 5
Author(s): Kristyna Kupkova, Savera J. Shetty, Rashidul Haque, William A. Petri, David T. Auble
Software Mentions: 14
Published: about 3 years ago
10.1186/s13059-021-02349-4
PEPPRO: quality control and processing of nascent RNA profiling dataCited by: 14
Author(s): Jason P. Smith, Arun B. Dutta, Kizhakke Mattada Sathyan, Michael J. Guertin, Nathan C. Sheffield
Software Mentions: 14
Published: over 3 years ago
10.1093/gigascience/giz149
Refgenie: a reference genome resource managerCited by: 28
Author(s): Michał Stolarczyk, Vincent Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield
Software Mentions: 9
Published: almost 5 years ago