Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1093/gigascience/giz149
https://doi.org/10.1093/gigascience/giz149
Refgenie: a reference genome resource manager
Cited by: 28
Author(s): Michał Stolarczyk, Vincent Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield
Published: over 4 years ago
Software Mentions 9
bioconductor: ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypesPapers that mentioned: 72
bioconductor: tximeta
Transcript Quantification Import with Automatic MetadataPapers that mentioned: 11
pypi: refgenconf
A standardized configuration object for reference genome assembliesPapers that mentioned: 1
pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta filePapers that mentioned: 3
pypi: refgenieserver
This server provides both a web interface and a RESTful API. Users may explore and download archived indexes from the web interface or develop tools that programmatically query the API.Papers that mentioned: 1