Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz149

https://doi.org/10.1093/gigascience/giz149

Refgenie: a reference genome resource manager

Cited by: 28
Author(s): Michał Stolarczyk, Vincent Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield
Published: almost 5 years ago

Software Mentions 9

bioconductor: ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
Papers that mentioned: 72
bioconductor: tximeta
Transcript Quantification Import with Automatic Metadata
Papers that mentioned: 11
pypi: docker
A Python library for the Docker Engine API.
Papers that mentioned: 39
pypi: genomepy
Genes and genomes at your fingertips
Papers that mentioned: 2
pypi: refgenconf
A standardized configuration object for reference genome assemblies
Papers that mentioned: 1
pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
Papers that mentioned: 3
pypi: refgenieserver
This server provides both a web interface and a RESTful API. Users may explore and download archived indexes from the web interface or develop tools that programmatically query the API.
Papers that mentioned: 1
pypi: refget
Python client for refget
Papers that mentioned: 4
pypi: uvicorn
The lightning-fast ASGI server.
Papers that mentioned: 1