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Papers: 10.1093/gigascience/giz149

https://doi.org/10.1093/gigascience/giz149

Refgenie: a reference genome resource manager

Cited by: 28
Author(s): Michał Stolarczyk, Vincent Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield
Published: over 5 years ago

Software Mentions 9

bioconductor: ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
Papers that mentioned: 72
Very Likely Science (100)
bioconductor: tximeta
Transcript Quantification Import with Automatic Metadata
Papers that mentioned: 11
Very Likely Science (100)
pypi: docker
A Python library for the Docker Engine API.
Papers that mentioned: 39
Very Likely Science (100)
pypi: genomepy
Genes and genomes at your fingertips
Papers that mentioned: 2
Very Likely Science (100)
pypi: refgenconf
A standardized configuration object for reference genome assemblies
Papers that mentioned: 1
Very Likely Science (80)
pypi: refgenie
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file
Papers that mentioned: 3
Very Likely Science (80)
pypi: refgenieserver
This server provides both a web interface and a RESTful API. Users may explore and download archived indexes from the web interface or develop tools that programmatically query the API.
Papers that mentioned: 1
Very Likely Science (80)
pypi: refget
Python client for refget
Papers that mentioned: 4
Very Likely Science (95)
pypi: uvicorn
The lightning-fast ASGI server.
Papers that mentioned: 1
Very Likely Science (100)