Ecosyste.ms: Papers

10.1186/s13059-021-02349-4

PEPPRO: quality control and processing of nascent RNA profiling data
Cited by: 14
Author(s): Jason P. Smith, Arun B. Dutta, Kizhakke Mattada Sathyan, Michael J. Guertin, Nathan C. Sheffield
Software Mentions: 14
Published: over 3 years ago

10.1038/s41598-020-77201-z

An improved de novo assembling and polishing of Solea senegalensis transcriptome shed light on retinoic acid signalling in larvae
Cited by: 3
Author(s): José Córdoba-Caballero, Pedro Seoane, Fernando M. Jabato, James R. Perkins, Manuel Manchado, M. Gonzalo Claros
Software Mentions: 9
Published: almost 4 years ago

10.1128/AEM.02755-17

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities
Cited by: 45
Author(s): Prem K. Raghupathi, Jerneja Zupančič, Asker Brejnrod, Samuel Jacquiod, Kurt Houf, Mette Burmølle, Nina Gunde‐Cimerman, Søren J. Sørensen
Software Mentions: 8
Published: over 6 years ago

10.1371/journal.pone.0232271

Benchmarking RNA-seq differential expression analysis methods using spike-in and simulation data
Cited by: 20
Author(s): Bukyung Baik, Susan A. Yoon, Dougu Nam
Software Mentions: 8
Published: over 4 years ago

10.3389/fonc.2020.605680

Pathway-Based Drug-Repurposing Schemes in Cancer: The Role of Translational Bioinformatics
Cited by: 22
Author(s): Enrique Hernández‐Lemus, Mireya Martínez-García
Software Mentions: 2
Published: almost 4 years ago

10.1002/hbm.25545

The impact of graph construction scheme and community detection algorithm on the repeatability of community and hub identification in structural brain networks
Cited by: 7
Author(s): Stavros I. Dimitriadis, E. Messaritaki, Derek K. Jones
Software Mentions: 2
Published: over 3 years ago

10.1038/s41396-019-0491-z

Niche differentiation among annually recurrent coastal Marine Group II Euryarchaeota
Cited by: 36
Author(s): Luis H. Orellana, Ben Francis, Karen Krüger, Hanno Teeling, Marie-Caroline Müller, Bernhard M. Fuchs, Konstantinos T. Konstantinidis, Rudolf Amann
Software Mentions: 2
Published: about 5 years ago

10.3390/microorganisms9071494

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.
Cited by: 34
Author(s): Sandra Wiegand, Patrick Rast, Nicolai Kallscheuer, Mareike Jogler, Anja Heuer, Christian Boedeker, Olga Jeske, Timo Kohn, John Vollmers, Anne‐Kristin Kaster, Christian Quast, Frank Oliver Glöckner, Manfred Rohde, Christian Jogler
Software Mentions: 2
Published: over 3 years ago

10.1016/j.dib.2020.106710

A dataset of four probiotic Bifidobacterium strains genome assemblies
Cited by: 3
Author(s): Aleksei A. Korzhenkov, A.V. Tepliuk, K. V. Sidoruk, Konstantin E Voyushin, М. В. Патрушев, Ilya V. Kublanov, Stepan V. Toshchakov
Software Mentions: 1
Published: almost 4 years ago

10.1186/s12862-015-0366-5

Intraspecific genetic lineages of a marine mussel show behavioural divergence and spatial segregation over a tropical/subtropical biogeographic transition
Cited by: 23
Author(s): Gerardo I. Zardi, Katy R. Nicastro, Christopher D. McQuaid, Rita Castilho, Joana F. Costa, Ester Á. Serrão, Gareth A. Pearson
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pmed.1003747

Evaluation of portable devices for medicine quality screening: Lessons learnt, recommendations for implementation, and future priorities
Cited by: 7
Author(s): Céline Caillet, Serena Vickers, Vayouly Vidhamaly, Kem Boutsamay, Phonepasith Boupha, Stephen Zambrzycki, Nantasit Luangasanatip, Yoel Lubell, Facundo M. Fernández, Paul N. Newton
Software Mentions: 1
Published: about 3 years ago

10.1007/s10482-020-01489-0

Additions to the genus Gimesia: description of Gimesia alba sp. nov., Gimesia algae sp. nov., Gimesia aquarii sp. nov., Gimesia aquatilis sp. nov., Gimesia fumaroli sp. nov. and Gimesia panareensis sp. nov., isolated from aquatic habitats of the Northern Hemisphere
Cited by: 38
Author(s): Sandra Wiegand, Mareike Jogler, Christian Boedeker, Anja Heuer, Patrick Rast, Stijn H. Peeters, Mike S. M. Jetten, Anne‐Kristin Kaster, Manfred Rohde, Nicolai Kallscheuer, Christian Jogler
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.ppat.1006796

Influenza A virus hemagglutinin glycosylation compensates for antibody escape fitness costs
Cited by: 53
Author(s): Ivan Košík, William L. Ince, Lauren E. Gentles, Andrew J. Oler, Martina Košíková, Matthew Angel, Javier G. Magadán, Hang Xie, Christopher B. Brooke, Jonathan W. Yewdell
Software Mentions: 1
Published: almost 7 years ago