Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: proml
https://packages.ecosyste.ms/registries/pypi.org/packages/proml
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Latest release: about 4 years ago
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Papers Mentioning proml 23
10.1186/s12864-015-1765-0
POTION: an end-to-end pipeline for positive Darwinian selection detection in genome-scale data through phylogenetic comparison of protein-coding genesCited by: 31
Author(s): Jorge Augusto Hongo, Giovanni Marques de Castro, Luiz Cálice Cintra, Adhemar Zerlotini, Francisco Pereira Lobo
Software Mentions: 3
Published: over 9 years ago
10.1186/1471-2164-6-114
Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomesCited by: 67
Author(s): Xinguo Wang, Qin Zhao, Bruce M. Christensen
Software Mentions: 3
Published: about 19 years ago
10.1186/s12859-020-03738-5
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstructionCited by: 0
Author(s): Sriram P. Chockalingam, Jodh S. Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru
Software Mentions: 2
Published: about 4 years ago
10.1186/s12859-018-2399-4
PQ, a new program for phylogeny reconstructionCited by: 0
Author(s): Dmitry Penzar, Mikhail Krivozubov, Sergei A. Spirin
Software Mentions: 2
Published: about 6 years ago
10.1099/mgen.0.000508
Acquisition of pcnB [poly(A) polymerase I] genes via horizontal transfer from the β, γ-ProteobacteriaCited by: 2
Author(s): George H. Jones
Software Mentions: 2
Published: almost 4 years ago
10.1186/gb-2007-8-7-r132
Evolutionary conservation of regulated longevity assurance mechanismsCited by: 190
Author(s): Joshua McElwee, Eugene F. Schuster, Eric Blanc, Matthew D. W. Piper, James H. Thomas, Dhaval Patel, Colin Selman, Dominic J. Withers, Janet M. Thornton, Linda Partridge, David Gems
Software Mentions: 2
Published: almost 18 years ago
10.1038/s41598-018-24382-3
Mansonella ozzardi mitogenome and pseudogene characterisation provides new perspectives on filarial parasite systematics and CO-1 barcodingCited by: 20
Author(s): James Lee Crainey, Michel Abanto, Túllio Romão Ribeiro da Silva, Jansen Fernandes Medeiros, Felipe Arley Costa Pessoa, Yago Vinícius Serra dos Santos, Ana Carolina Paulo Vicente, Sérgio Luíz Bessa Luz
Software Mentions: 2
Published: over 6 years ago
10.1186/s12864-015-1720-0
Horizontal gene transfer in an acid mine drainage microbial communityCited by: 18
Author(s): Jiangtao Guo, Qi Wang, Xiaoqi Wang, Fumeng Wang, Jianming Yao, Huaiqiu Zhu
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2164-7-188
The evolving doublecortin (DCX) superfamilyCited by: 104
Author(s): Orly Reiner, Frédéric M. Coquelle, Bastian Peter, Talia Levy, Ariel Kaplan, Tamar Sapir, Irit Orr, Naama Barkai, Gregor Eichele, Sven Bergmann
Software Mentions: 1
Published: over 18 years ago
10.1186/1471-2105-13-S10-S14
Algorithms: simultaneous error-correction and rooting for gene tree reconciliation and the gene duplication problemCited by: 21
Author(s): Paweł Górecki, Oliver Eulenstein
Software Mentions: 1
Published: over 12 years ago
10.1186/1471-2229-9-136
Proteins with an Euonymus lectin-like domain are ubiquitous in EmbryophytaCited by: 34
Author(s): Elke Fouquaert, Willy J. Peumans, Tom Tm Vandekerckhove, Maté Ongenaert, Els J.M. Van Damme
Software Mentions: 1
Published: almost 15 years ago
10.1186/1472-6807-9-68
Partially-supervised protein subclass discovery with simultaneous annotation of functional residuesCited by: 8
Author(s): Benjamin Georgi, Jörg Schultz, Alexander Schliep
Software Mentions: 1
Published: almost 16 years ago
10.1093/bioinformatics/btu331
kmacs: the <i>k</i> -mismatch average common substring approach to alignment-free sequence comparisonCited by: 114
Author(s): Chris-André Leimeister, Burkhard Morgenstern
Software Mentions: 1
Published: over 10 years ago
10.1186/1745-6150-6-48
Sequence variability of Rhizobiales orthologs and relationship with physico-chemical characteristics of proteinsCited by: 4
Author(s): Humberto Peralta, Gabriela Guerrero, Alejandro Aguilar, Jaime Mora
Software Mentions: 1
Published: about 13 years ago
10.1155/2013/170580
Secure Encapsulation and Publication of Biological Services in the Cloud Computing EnvironmentCited by: 7
Author(s): Weizhe Zhang, Xuehui Wang, Bo Lü, Tai-hoon Kim
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0013999
MPI-PHYLIP: Parallelizing Computationally Intensive Phylogenetic Analysis Routines for the Analysis of Large Protein FamiliesCited by: 20
Author(s): Alexander J. Ropelewski, Hugh B. Nicholas, Ricardo R. Gonzalez Mendez
Software Mentions: 1
Published: about 14 years ago
10.1093/molbev/msv002
Regulation of Splicing Factors by Alternative Splicing and NMD Is Conserved between Kingdoms Yet Evolutionarily FlexibleCited by: 122
Author(s): Liana F. Lareau, Steven E. Brenner
Software Mentions: 1
Published: over 9 years ago
10.1186/1743-422X-4-76
An ectromelia virus profilin homolog interacts with cellular tropomyosin and viral A-type inclusion proteinCited by: 10
Author(s): C. Butler-Cole, Mary J. Wagner, Melissa Da Silva, Gordon D. Brown, Robert D. Burke, Chris Upton
Software Mentions: 1
Published: over 17 years ago
10.1371/journal.pbio.0030130
Evolutionary Origins of Genomic Repertoires in BacteriaCited by: 315
Author(s): Emmanuelle Lerat, Vincent Daubin, Howard Ochman, Nancy A. Moran
Software Mentions: 1
Published: over 19 years ago
10.1371/journal.pone.0178245
Transcriptome analysis of Phytophthora litchii reveals pathogenicity arsenals and confirms taxonomic statusCited by: 15
Author(s): Jun Sun, Zhiqiang Gao, Xinchun Zhang, Xuefeng Zou, Liangjing Cao, Jiabao Wang
Software Mentions: 1
Published: over 7 years ago
10.1186/1471-2148-6-78
Establishment of endolithic populations of extremophilic Cyanidiales (Rhodophyta)Cited by: 49
Author(s): Hyun Soo Yoon, Claudia Ciniglia, Min Wu, Josep M. Comeron, Gabriele Pinto, Antonino Pollio, Debashish Bhattacharya
Software Mentions: 1
Published: about 18 years ago
10.1186/1471-2148-8-26
Evolution of a family of metazoan active-site-serine enzymes from penicillin-binding proteins: a novel facet of the bacterial legacyCited by: 35
Author(s): Nina Peitsaro, Žydrūnė Polianskytė, Jarno Tuimala, Isabella Pörn-Ares, Julius Liobikas, Oliver Speer, Dan Lindholm, J. S. Thompson, Ove Eriksson
Software Mentions: 1
Published: almost 17 years ago
10.1186/s12859-017-1658-0
A greedy alignment-free distance estimator for phylogenetic inferenceCited by: 28
Author(s): Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru
Software Mentions: 1
Published: over 7 years ago