Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: primer3plus
https://packages.ecosyste.ms/registries/pypi.org/packages/primer3plus
An easy-to-use Python API for Primer3 primer design.
12 versions
Latest release: almost 5 years ago
54 downloads last month
Papers Mentioning primer3plus 24
10.1371/journal.pone.0080156
PD5: A General Purpose Library for Primer Design SoftwareCited by: 6
Author(s): Michael C. Riley, Wayne Aubrey, Michael Young, Amanda Clare
Software Mentions: 5
Published: about 11 years ago
10.1002/1878-0261.12692
DAPK3 participates in the mRNA processing of immediate early genes in chronic lymphocytic leukaemiaCited by: 2
Author(s): Fraser Thomas, Katie Holmes, Sarah Kreuz, Peter Hillmen, Pascal Lefèvre
Software Mentions: 4
Published: over 4 years ago
10.3390/microorganisms8071012
Transcriptomic and Ultrastructural Signatures of K+-Induced Aggregation in Phytophthora parasitica ZoosporesCited by: 7
Author(s): Ilaria Bassani, Corinne Rancurel, Sophie Pagnotta, François Orange, Nicolas Pons, Kévin Lebrigand, Franck Panabières, Laurent Counillon, Xavier Noblin, Eric Galiana
Software Mentions: 3
Published: over 4 years ago
10.3389/fped.2019.00122
Combined Immunodeficiency With Late-Onset Progressive Hypogammaglobulinemia and Normal B Cell Count in a Patient With RAG2 DeficiencyCited by: 10
Author(s): Mayra B. Dorna, Pamela F. A. Barbosa, A. Rangel-Santos, Krisztián Csomós, Boglárka Ujházi, Joseph Dasso, D.I. Thwaites, Joan Boyes, Sinisa Savic, Jolán E. Walter
Software Mentions: 3
Published: over 5 years ago
10.1186/gb-2012-13-2-r14
Chromatin structure changes around satellite repeats on the Schistosoma mansoni female sex chromosome suggest a possible mechanism for sex chromosome emergenceCited by: 30
Author(s): Julie M. J. Lepesant, Céline Cosseau, Jérôme Boissier, Michael Freitag, Julien Portela, Déborah Climent, Cécile Perrin, Adhemar Zerlotini, Christoph Grunau
Software Mentions: 3
Published: almost 13 years ago
10.1371/journal.pone.0220993
Transcriptomic analysis of Pacific white shrimp (Litopenaeus vannamei, Boone 1931) in response to acute hepatopancreatic necrosis disease caused by Vibrio parahaemolyticusCited by: 38
Author(s): Adrián E. Velázquez-Lizárraga, José L. Juárez‐Morales, Ilie S. Racotta, Humberto Villarreal, Oswaldo Valdés‐López, Antonio Luna‐González, Cármen Rodrı́guez-Jaramillo, Norma Estrada, Felipe Ascencio
Software Mentions: 2
Published: over 5 years ago
10.3389/fvets.2020.611598
Allogeneic Embryos Disregulate Leukemia Inhibitory Factor (LIF) and Its Receptor in the Porcine Endometrium During ImplantationCited by: 4
Author(s): Josep M. Cambra, Amaia Jauregi-Miguel, Manuel Álvarez‐Rodríguez, Inmaculada Parrilla, M.A. Gil, Emilio A. Martı́nez, C. Cuello, Heriberto Rodríguez-Martinez, Cristina A. Martínez
Software Mentions: 2
Published: about 4 years ago
10.3390/cells7060058
Effect of Notch and PARP Pathways’ Inhibition in Leukemic CellsCited by: 4
Author(s): Luka Horvat, Mariastefania Antica, Maja Matulić
Software Mentions: 1
Published: over 6 years ago
10.1093/database/baaa091
BarleyVarDB: a database of barley genomic variationCited by: 11
Author(s): Cong Tan, Brendan Chapman, Penghao Wang, Qisen Zhang, Gaofeng Zhou, Xiao Qi Zhang, Roberto A. Barrero, M. Bellgard, Chengdao Li
Software Mentions: 1
Published: almost 5 years ago
10.1093/database/bau078
LeishMicrosatDB: open source database of repeat sequences detected in six fully sequenced Leishmania genomesCited by: 6
Author(s): Manas Ranjan Dikhit, Kanhu C. Moharana, Bikash R. Sahoo, Ganesh Chandra Sahoo, Pradeep Das
Software Mentions: 1
Published: over 10 years ago
10.3389/fped.2019.00044
Exome Analysis Identifies a Novel Compound Heterozygous Alteration in TGM1 Gene Leading to Lamellar Ichthyosis in a Child From Saudi Arabia: Case PresentationCited by: 7
Author(s): Sami Raja Alallasi, Amal A Kokandi, Babajan Banagnapali, Noor Ahmad Shaik, Bandar Ali Al-Shehri, Nuha Alrayes, Jumana Y. Al‐Aama, Musharraf Jelani
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00439-013-1393-1
Comparative-high resolution melting: a novel method of simultaneous screening for small mutations and copy number variationsCited by: 11
Author(s): Paweł Boruń, Łukasz Kubaszewski, Tomasz Banasiewicz, Jarosław Walkowiak, Marzena Skrzypczak-Zielińska, Marta Kaczmarek-Ryś, Andrzej Pławski
Software Mentions: 1
Published: about 11 years ago
10.3389/fphys.2017.01001
The Gastric Ganglion of Octopus vulgaris: Preliminary Characterization of Gene- and Putative Neurochemical-Complexity, and the Effect of Aggregata octopiana Digestive Tract Infection on Gene ExpressionCited by: 19
Author(s): Elena Baldascino, Giulia Di Cristina, Perla Tedesco, Carl Hobbs, Tanya J. Shaw, Giovanna Ponte, Paul Andrews
Software Mentions: 1
Published: almost 7 years ago
10.3389/fpls.2020.00852
Phaeophyceaean (Brown Algal) Extracts Activate Plant Defense Systems in Arabidopsis thaliana Challenged With Phytophthora cinnamomiCited by: 25
Author(s): Tohidul Islam, Han Ming Gan, Mark Ziemann, Hashmath Inayath Hussain, Tony Arioli, David M. Cahill
Software Mentions: 1
Published: over 4 years ago
10.3389/fpls.2017.01769
Leptosphaeria maculans Alters Glucosinolate Profiles in Blackleg Disease–Resistant and -Susceptible Cabbage LinesCited by: 18
Author(s): Arif Hasan Khan Robin, Go-Eun Yi, Rawnak Laila, Mohammad Rashed Hossain, Jong-In Park, Hye R. Kim, Ill–Sup Nou
Software Mentions: 1
Published: about 7 years ago
10.3389/fvets.2020.00376
Molecular Detection and Characterization of the mecA and nuc Genes From Staphylococcus Species (S. aureus, S. pseudintermedius, and S. schleiferi) Isolated From Dogs Suffering Superficial Pyoderma and Their Antimicrobial Resistance ProfilesCited by: 18
Author(s): María S González-Domínguez, Hernán D. Carvajal, David A. Calle-Echeverri, Danny Chinchilla-Cárdenas
Software Mentions: 1
Published: over 4 years ago
10.18632/oncotarget.10633
<i>Beta protein 1</i>homeoprotein induces cell growth and estrogen-independent tumorigenesis by binding to the estrogen receptor in breast cancerCited by: 2
Author(s): Sidney W. Fu, Saurabh Kirolikar, Erika Ginsburg, Xiaohui Tan, Arnold M. Schwartz, Samuel J. Simmens, Yan Gao Man, Joseph J. Pinzone, Christine B. Teal, Sanket Awate, Barbara K. Vonderhaar, Patricia E. Berg
Software Mentions: 1
Published: over 8 years ago
10.3390/insects12020138
A Gene-Based Method for Cytogenetic Mapping of Repeat-Rich Mosquito GenomesCited by: 1
Author(s): Reem A. Masri, Dmitriy A. Karagodin, Atashi Sharma, Maria V. Sharakhova
Software Mentions: 1
Published: almost 4 years ago
10.1038/srep18340
Chitinases and Imaginal disc growth factors organize the extracellular matrix formation at barrier tissues in insectsCited by: 103
Author(s): Yanina-Yasmin Pesch, Dietmar Riedel, Kapil R Patil, Gerrit Loch, Matthias Behr
Software Mentions: 1
Published: almost 9 years ago
10.1038/s41598-017-09428-2
GABA accretion reduces Lsi-1 and Lsi-2 gene expressions and modulates physiological responses in Oryza sativa to provide tolerance towards arsenicCited by: 23
Author(s): Navin Kumar, Arvind Kumar Dubey, Atul Kumar Upadhyay, Akash Gautam, Ruma Ranjan, Saripella Srikishna, Nayan Sahu, Soumit K. Behera, Shekhar Mallick
Software Mentions: 1
Published: over 7 years ago
10.1002/1878-0261.12363
<scp>PGC</scp> 1β regulates multiple myeloma tumor growth through <scp>LDHA</scp> ‐mediated glycolytic metabolismCited by: 29
Author(s): Hongyu Zhang, Ling Li, Qi Chen, Min Li, Jia Feng, Yu Sun, Rong Zhao, Yu Zhu, Yang Lv, Zhigang Zhu, Xiaodong Huang, Weiguo Xie, Wei Xiang, Paul Yao
Software Mentions: 1
Published: over 6 years ago
10.1007/s11033-021-06255-7
miR-34a-5p might have an important role for inducing apoptosis by down-regulation of SNAI1 in apigenin-treated lung cancer cellsCited by: 17
Author(s): Rieko Aida, Kenta Hagiwara, Kazunori Okano, Kyoko Nakata, Yuho Obata, Takahiro Yamashita, Kaoru Yoshida, Hiromi Hagiwara
Software Mentions: 1
Published: over 3 years ago
10.3390/pathogens9070586
Stenamoeba dejonckheerei sp. nov., a Free-Living Amoeba Isolated from a Thermal SpringCited by: 5
Author(s): Manuel Alejandro Borquez-Román, Luis Fernando Lares-Jiménez, Libia Zulema Rodríguez-Anaya, José Reyes González-Galavíz, Paul A. Fuerst, Jose Cuauhtémoc Ibarra‐Gámez, Ramón Casillas-Hernández, Fernando Lares‐Villa
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0047885
One-Step Agrobacterium Mediated Transformation of Eight Genes Essential for Rhizobium Symbiotic Signaling Using the Novel Binary Vector System pHUGECited by: 38
Author(s): Andreas Untergasser, Gerben J. M. Bijl, Wei Liu, Ton Bisseling, Jan G. Schaart, René Geurts
Software Mentions: 1
Published: about 12 years ago