Ecosyste.ms: Papers

10.1534/g3.119.400373

isqg: A Binary Framework for<i>in Silico</i>Quantitative Genetics
Cited by: 1
Author(s): Fernando H. Toledo, Paulino Pérez‐Rodríguez, J. Crossa, Juan Burgueño
Software Mentions: 8
Published: over 5 years ago

10.1186/s12868-016-0283-6

25th Annual Computational Neuroscience Meeting: CNS-2016
Cited by: 71
Author(s): Tatyana O. Sharpee, Alain Destexhe, Mitsuo Kawato, Vladislav Sekulić, Frances K. Skinner, Daniel K. Wójcik, Chaitanya Chintaluri, Dorottya Cserpán, Zoltán Somogyvári, Jae Kyoung Kim, Zachary P. Kilpatrick, Matthew R. Bennett, Krešimir Josić, Irene Elices, David Arroyo, Rafael Levi, Francisco B. Rodríguez, Pablo Varona, Eunjin Hwang, Bowon Kim, Hio-Been Han, Tae Il Kim, James T Mckenna, Ritchie E. Brown, Robert W. McCarley, Jee Hyun Choi, James Rankin, Pamela Osborn Popp, John Rinzel, Alejandro Tabas, André Rupp, Emili Balaguer‐Ballester, Matias I. Maturana, David B. Grayden, Shaun L. Cloherty, Tatiana Kameneva, M. Ibbotson, Hamish Meffin, Veronika Koren, Timm Lochmann, Valentin Dragoi, Klaus Obermayer, Maria Psarrou, Maria J. Schilstra, Neil Davey, Benjamin Torben‐Nielsen, Volker Steuber, Huiwen Ju, Junsheng Yu, Michael L. Hines, Liang Chen, Yuguo Yu, Jimin Kim, Will Leahy, Eli Shlizerman, Justas Birgiolas, Richard C. Gerkin, Atthaphon Viriyopase, Raoul-Martin Memmesheimer, Stan Gielen, Yuri Dabaghian, Justin DeVito, Luca Perotti, Anmo J. Kim, Lisa M. Fenk, Cheng Cheng, Gaby Maimon, Chang Zhao, Yves F. Widmer, Simon G. Sprecher, Walter Senn, Geir Halnes, Tuomo Mäki‐Marttunen, Daniel Keller, Klas H. Pettersen, Ole A. Andreassen, Gaute T. Einevoll, Yasunori Yamada, Moira L. Steyn-Ross, D. Alistair Steyn-Ross, Jorge F. Mejías, John D. Murray, Henry Kennedy, Xiaojing Wang, Alexandra Kruscha, Jan Grewe, Jan Benda, Benjamin Lindner, Laurent Badel, Kazumi Ohta, Yoshiko Tsuchimoto, Hokto Kazama, B. Kahng, Nicoladie D. Tam, Luca Pollonini, George Zouridakis, Jaehyun Soh, DaeEun Kim, Minsu Yoo, Stéphanie Palmer, Viviana Culmone, Ingo Bojak, Andrea Ferrario, Robert Merrison-Hort, Roman Borisyuk, Chang Sub Kim, T. Tezuka, Pangyu Joo, Young-Ah Rho, Shawn D. Burton, G. Bard Ermentrout, Jaeseung Jeong, Nathaniel N. Urban, Petr Maršálek, Hoon-Hee Kim, Seok-hyun Moon, Dowon Lee, Sung-beom Lee, Ji-yong Lee, Yaroslav I. Molkov, Khaldoun C. Hamade, Wondimu Teka, William Barnett, Taegyo Kim, Sergey N. Markin, Ilya A. Rybak, Csaba Forró, Harald Dermutz, László Demkó, János Vörös, Andrey Babichev, Haiping Huang, Sergio Verduzco-Flores, Filipa Santos, Péter András, Christoph Metzner, Achim Schweikard, Bartosz Zurowski, James P. Roach, Leonard M. Sander, Michał Żochowski, Quinton M. Skilling, Nicolette Ognjanovski, Sara J. Aton, Shengjun Wang, Guang Ouyang, Jing Guang, Mingsha Zhang, K. Y. Michael Wong, Changsong Zhou, P. A. Robinson, Paula Sanz‐Leon, P.M. Drysdale, Felix Fung, Romesh Abeysuriya, Chris Rennie, Xuelong Zhao, Yoonsuck Choe, Huei-Fang Yang, Yuanyuan Mi, Xinhua Lin, Si Wu, Joscha Liedtke, Manuel Schottdorf, Fred Wolf, Yuichi Yamamura, Jeffery R. Wickens, Timothy Rumbell, Julia Ramsey, Amy Reyes, Danel Draguljić, Patrick R. Hof, Jennifer I. Luebke, Christina M. Weaver, Hu He, Yang Xu, Hailin Ma, Zhiheng Xu, Yuzhe Wang, Kwangyeol Baek, Laurel Morris, Prantik Kundu, Valerie Voon, Everton J. Agnes, Tim P. Vogels, William F Podlaski, Martin A. Giese, Pradeep Kuravi, Rufin Vogels, Alexander Seeholzer, Rajnish Ranjan, Tim P. Vogels, Joaquín J. Torres, Fabiano Baroni, Roberto Latorre, Bart Gips, Eric Lowet, Mark Roberts, Peter De Weerd, Ole Jensen, Jan van der Eerden, Abdorreza Goodarzinick, M. D. Niry, Alireza Valizadeh, Aref Pariz, Shervin S. Parsi, Julia M. Warburton, Lucia Marucci, Francesco Tamagnini, Jon Brown, Krasimira Tsaneva-Atanasova, Florence I. Kleberg, Jochen Triesch, Bahar Moezzi, Nicolangelo Iannella, Natalie Schaworonkow, Lukas Plogmacher, Mitchell R. Goldsworthy, Brenton Hordacre, Mark D. McDonnell, Michael C. Ridding, Martin Zapotocky, Daniel Šmít, Isabelle Dusart, Alain Trembleau, Sakyasingha Dasgupta, Isao Nishikawa, Kazuyuki Aihara, Taro Toyoizumi, Daniel Robb, Nick Mellen, Natalia Toporikova, Rongxiang Tang, Yi‐Yuan Tang, Guangsheng Liang, Seth Kiser, James H. Howard, Julia Goncharenko, Sergej O. Voronenko, Tosif Ahamed, Greg Stephens, Pierre Yger, Baptiste Lefebvre, Giulia Lia Beatrice Spampinato, Elric Esposito, Marcel Stimberg et Olivier Marre, Hansol Choi, Min‐Ho Song, SueYeon Chung, Dan D. Lee, Haim Sompolinsky, Ryan S. Phillips, Jeffrey C. Smith, Alexandra P. Chatzikalymniou, Katie Ferguson, N. Alex Cayco Gajic, Claudia Clopath, R. Angus Silver, Padraig Gleeson, Bóris Marin, Sadra Sadeh, Adrián Quintana, Matteo Carandini, Salvador Dura‐Bernal, William W. Lytton, Andrew Davison, Luozheng Li, Wenhao Zhang, Dahui Wang, Youngjo Song, Sol Park, Ilhwan Choi, Hee‐Sup Shin, Hannah Choi, Anitha Pasupathy, Eric Shea‐Brown, Dongsung Huh, Terrence J. Sejnowski, Simon Vogt, Arvind Kumar, Robert J. Schmidt, Stephen Van Wert, Steven J. Schiff, Richard Veale, Matthias Scheutz, Sang Wan Lee, Júlia V. Gallinaro, Stefan Rotter, Leonid L. Rubchinsky, Chung Ching Cheung, Shivakeshavan Ratnadurai‐Giridharan, Safura Rashid Shomali, Majid Nili Ahmadabadi, Hideaki Shimazaki, Seyyed Nader Rasuli, Xiaochen Zhao, Malte J. Rasch, Jens Wilting, Viola Priesemann, Anna Levina, Lucas Rudelt, Joseph T. Lizier, Richard E. Spinney, Mikail Rubinov, Michael Wibral, Ji Hyun Bak, Jonathan W. Pillow, Yuan Zaho, Il Park, J K Kang, Hae Jeong Park, Jaeson Jang, Se‐Bum Paik, Woochul Choi, Changju Lee, Min Song, Hyeonsu Lee, Youngjin Park, Ergin Yilmaz, Veli Baysal, Mahmut Özer, Daniel Saska, Thomas Nowotny, Ho Ka Chan, Alan Diamond, Christoph S. Herrmann, Micah M. Murray, Silvio Ionta, Axel Hutt, Jérémie Lefebvre, Philipp Weidel, Renato Duarte, Abigail Morrison, Jung H. Lee, Ramakrishnan Iyer, Ştefan Mihalaş, Christof Koch, Mihai A. Petrovici, Luziwei Leng, Oliver Breitwieser, David Stöckel, Ilja Bytschok, Roman Martel, Johannes Bill, Johannes Schemmel, K. Meier, Timothy B Esler, Anthony N. Burkitt, Robert R. Kerr, Bahman Tahayori, Max Nolte, Michael Reimann, Eilif Müller, Henry Markram, Antonio Parziale, Rosa Senatore, Angelo Marcelli, K. Skiker, Mounir Maouene, Samuel A. Neymotin, Alexandra H Seidenstein, Péter L. Lakatos, Terence D. Sanger, Rosemary J. Menzies, Campbell McLauchlan, Sacha J. van Albada, David J. Kedziora, Samuel A. Neymotin, Cliff C. Kerr, Benjamin A. Suter, Gordon M. Shepherd, Juhyoung Ryu, Sang-Hun Lee, Joonwon Lee, Hyang Jung Lee, Daeseob Lim, Jisung Wang, Heonsoo Lee, Nam Jung, Le Anh Quang, Seung Eun Maeng, Tae Ho Lee, Jae Woo Lee, Chang-Hyun Park, Sora Ahn, Jangsup Moon, Yun Seo Choi, Juhee Kim, Sang Beom Jun, Seungjun Lee, Hyang Woon Lee, Sumin Jo, Eunji Jun, Suin Yu, Felix Goetze, Pik‐Yin Lai, Seonghyun Kim, Jeehyun Kwag, Hyun Jae Jang, Marko Filipović, Ramón Reig, Ad Aertsen, Gilad Silberberg, Claudia Bachmann, Simone Buttler, Heidi I.L. Jacobs, Kim Dillen, Gereon R. Fink, Juraj Kukolja, Daniel Kepple, Hamza Giaffar, Dima Rinberg, Steven J. Shea, Alex Koulakov, Jyotika Bahuguna, Tom Tetzlaff, Jeanette Hellgren Kotaleski, Tim Kunze, Andre D. H. Peterson, Thomas R. Knösche, Minjung Kim, Hojeong Kim, Ji Sung Park, Ji Won Yeon, Sung-Phil Kim, Jae-Hwan Kang, Chungho Lee, Andreas Spiegler, Spase Petkoski, Matias Palva, Viktor K. Jirsa, Maria Luisa Saggio, Silvan F. Siep, William C. Stacey, Christophe Bernar, Oh-Hyeon Choung, Yong Jeong, Lee Yong-IL, Su Hyun Kim, Mir Jeong, Jeungmin Lee, Jaehyung Kwon, Jerald D. Kralik, Jaehwan Jahng, Dong‐Uk Hwang, Sang-Min Park, Seong-Kyun Kim, Hyoungkyu Kim, Pyeong Soo Kim, Sangsup Yoon, Sewoong Lim, Choongseok Park, T. Miller, Katie N Clements, Sungwoo Ahn, Eoon Hye Ji, Fadi A. Issa, Jeonghun Baek, Shigeyuki Oba, Junichiro Yoshimoto, Kenji Doya, Shin Ishii, Thiago Mosqueiro, Martin F. Strube‐Bloss, Brian E. Smith, Ramón Huerta, Michal Hadrava, Jaroslav Hlinka, Hannah Bos, Moritz Helias, Charles M. Welzig, Zachary J. Harper, Won Sup Kim, In-Seob Shin, Hyeon‐Man Baek, Seung Kee Han, René Richter, Julien Vitay, Frederick Beuth, Fred H. Hamker, Kelly Toppin, Yixin Guo, Bruce Graham, Penelope J. Kale, Leonardo L Gollo, Merav Stern, L. F. Abbott, Leonid Fedorov, Martin A. Giese, Mohammad Hovaidi Ardestani, Mohammad Javad Faraji, Kerstin Preuschoff, Wulfram Gerstner, M.J. van Gendt, Jeroen J. Briaire, Randy K. Kalkman, J.H.M. Frijns, Won Hee Lee, Sophia Frangou, Ben D. Fulcher, Patricia H. P. Tran, Alex Fornito, S. Gliske, Eugene Lim, Katherine A. Holman, Christian G. Fink, Jinseop S. Kim, Shang Mu, Kevin L. Briggman, H. Sebastian Seung, Detlef Wegener, Lisa Bohnenkamp, Udo Ernst, Anna Devor, Anders M. Dale, Glenn Terje Lines, Andy Edwards, Aslak Tveito, Espen Hagen, Johanna Senk, Markus Diesmann, Maximilian Schmidt, Rembrandt Bakker, Kelly Shen, Gleb Bezgin, Claus-Christian Hilgetag, Sacha J. van Albada, Haoqi Sun, Olga Sourina, Guang-Bin Huang, Felix Klanner, Cornelia Denk, Katharina Glomb, Adrián Ponce‐Alvarez, Matthieu Gilson, Petra Ritter, Gustavo Deco, Maria A. G. Witek, Eric Clarke, Mads Hansen, Mikkel Wallentin, Morten L. Kringelbach, Peter Vuust, Guido Klingbeil, Erik De Schutter, Wei‐Liang Chen, Yunliang Zang, Sungho Hong, Akira Takashima, Criseida Zamora, Andrew R. Gallimore, Dennis Goldschmidt, Poramate Manoonpong, Philippa J. Karoly, Dean R. Freestone, Daniel Soundry, Levin Kuhlmann, Liam Paninski, Mark Cook, Jaejin Lee, Yonatan I. Fishman, Yale E. Cohen, James A. Roberts, Luca Cocchi, Yann Sweeney, Mi Kyung Lee, Woo-Sung Jung, Youngsoo Kim, Younginha Jung, Yoon‐Kyu Song, Frédéric Chavane, Karthik Soman, Vignesh Muralidharan, V. Srinivasa Chakravarthy, Sabyasachi Shivkumar, Alekhya Mandali, Balasubramani Pragathi Priyadharsini, Hima Mehta, Catherine E. Davey, Braden A. W. Brinkman, Tyler Kekona, Fred Rieke, Michael A. Buice, Maurizio De Pittà, Hugues Berry, Nicolas Brunel, Michael Breakspear, Gary Marsat, Jordan Drew, Phillip D. Chapman, Kevin C. Daly, Samual P. Bradle, Sat Byul Seo, Jianzhong Su, Ege T. Kavalali, Justin Blackwell, LieJune Shiau, Laure Buhry, Kanishka Basnayake, Sue-Hyun Lee, Brandon A. Levy, Chris I. Baker, Timothee Leleu, Ryan T. Philips, Karishma Chhabria
Software Mentions: 7
Published: over 8 years ago

10.1186/1471-2105-13-76

EpiFire: An open source C++ library and application for contact network epidemiology
Cited by: 34
Author(s): Thomas J. Hladish, Eugene Melamud, Luis Barrera, Alison P. Galvani, Lauren Ancel Meyers
Software Mentions: 6
Published: over 12 years ago

10.1002/acm2.12678

Optimizing efficiency and safety in external beam radiotherapy using automated plan check (APC) tool and six sigma methodology
Cited by: 17
Author(s): Lukui Shi, Karl Bush, Julian Bertini, Yabo Fu, J. K. Lewis, Daniel Pham, Yong Yang, Thomas Niedermayr, Lawrie Skinner, Xing Li, Beth M. Beadle, Annie Hsu, Nataliya Kovalchuk
Software Mentions: 4
Published: over 5 years ago

10.1016/j.dib.2020.106704

Datasets and analyses of molecular dynamics simulations of covalent binary and ternary complexes of MHC class I-related molecule/T-cell receptor (MR1/TCR) agonists to understand complex formation and conditions of fluorescent labelling
Cited by: 0
Author(s): Anke Steinmetz, Thomas Yvorra, Pascal Retailleau, Olivier Lantz, Frédéric Schmidt
Software Mentions: 4
Published: almost 4 years ago

10.3390/s19204402

A Physical Model-Based Observer Framework for Nonlinear Constrained State Estimation Applied to Battery State Estimation
Cited by: 8
Author(s): Jonathan Brembeck
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pcbi.1004993

Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level
Cited by: 10
Author(s): X. Jessie Jeng, Z. John Daye, Wenbin Lu, Jung Ying Tzeng
Software Mentions: 3
Published: over 8 years ago

10.7554/eLife.66238

Random sub-diffusion and capture of genes by the nuclear pore reduces dynamics and coordinates inter-chromosomal movement
Cited by: 6
Author(s): Michael Chas Sumner, Steven B. Torrisi, Donna Garvey Brickner, Jason H. Brickner
Software Mentions: 3
Published: over 3 years ago

10.1093/bioinformatics/btu745

<i>Taxator-tk</i>: precise taxonomic assignment of metagenomes by fast approximation of evolutionary neighborhoods
Cited by: 104
Author(s): Johannes Dröge, Ivan Gregor, Alice C. McHardy
Software Mentions: 3
Published: about 10 years ago

10.3389/fnsys.2020.00031

Experimental and Computational Study on Motor Control and Recovery After Stroke: Toward a Constructive Loop Between Experimental and Virtual Embodied Neuroscience
Cited by: 20
Author(s): Anna Letizia Allegra Mascaro, Egidio Falotico, Spase Petkoski, Maria Pasquini, Lorenzo Vannucci, Núria Tort-Colet, Emilia Conti, Francesco Resta, Cristina Spalletti, Shravan Tata Ramalingasetty, Axel von Arnim, Emanuele Formento, Emmanouil Angelidis, Camilla H. Blixhavn, Trygve B. Leergaard, Matteo Caleo, Alain Destexhe, Auke Jan Ijspeert, Silvestro Micera, Cecilia Laschi, Viktor K. Jirsa, Marc‐Oliver Gewaltig, Francesco S. Pavone
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0251714

Braking performance oriented multi–objective optimal design of electro–mechanical brake parameters
Cited by: 1
Author(s): Tong Wu, Jing Li, Xuan Qin
Software Mentions: 2
Published: over 3 years ago

10.3390/s20123406

W-GPCR Routing Method for Vehicular Ad Hoc Networks
Cited by: 4
Author(s): Min Li, Zhenghui Gu, Yunliang Long, Xiaohua Shu, Qing Rong, Ziji Ma, Xun Shao
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0254456

The impact of vaccination to control COVID-19 burden in the United States: A simulation modeling approach
Cited by: 56
Author(s): Oğuzhan Alagöz, Ajay K. Sethi, Brian W. Patterson, Matthew M Churpek, Ghalib Alhanaee, Elizabeth Scaria, Nasia Safdar
Software Mentions: 2
Published: over 3 years ago

10.1016/j.isci.2021.102991

Solid-state self-template synthesis of Ta-doped Li2ZnTi3O8 spheres for efficient and durable lithium storage
Cited by: 6
Author(s): Dongwei Ma, Jiahui Li, Jing Yang, Cheng-Fu Yang, Maykel Manawan, Yongri Liang, Ting Feng, Yong‐Wei Zhang, Jia Hong Pan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12985-016-0578-3

Characterization of VP1 sequence of Coxsackievirus A16 isolates by Bayesian evolutionary method
Cited by: 9
Author(s): Zhao Guo-lian, Xun Zhang, Changmin Wang, Guoqing Wang, Fan Li
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0130353

Cognitive Improvement during Treatment for Mild Alzheimer’s Disease with a Chinese Herbal Formula: A Randomized Controlled Trial
Cited by: 25
Author(s): Yulian Zhang, Cuiru Lin, Linlin Zhang, Yuanwu Cui, Yun Gu, Guo Jia-kui, Di Wu, Qiang Li, Wook Song
Software Mentions: 1
Published: over 9 years ago

10.3390/cancers9120173

Recent Advances in Cancer Therapy Based on Dual Mode Gold Nanoparticles
Cited by: 63
Author(s): Ellas Spyratou, M. Makropoulou, Efstathios Efstathopoulos, Alexandros G. Georgakilas, Lembit Sihver
Software Mentions: 1
Published: about 7 years ago

10.3389/fchem.2018.00676

Performance Regulation of Thieno[3,2-b]benzothiophene π-Spacer-Based D-π-A Organic Dyes for Dye-Sensitized Solar Cell Applications: Insights From Computational Study
Cited by: 17
Author(s): Xiaoyin Xie, Zhihai Liu, Fu‐Quan Bai, Hongxing Zhang
Software Mentions: 1
Published: almost 6 years ago

10.3389/fonc.2021.659048

Current Limitations of Intraoperative Ultrasound in Brain Tumor Surgery
Cited by: 21
Author(s): Andrej Šteňo, Ján Buvala, Veronika Babková, A. Kiss, David Toma, A. V. Lysak
Software Mentions: 1
Published: almost 4 years ago

10.1038/s41597-020-00707-8

Density functional theory-based electric field gradient database
Cited by: 12
Author(s): Kamal Choudhary, Jaafar N. Ansari, I. I. Mazin, Karen L. Sauer
Software Mentions: 1
Published: about 4 years ago

10.1038/s41598-018-20111-y

Role of fluorine in two-dimensional dichalcogenide of SnSe 2
Cited by: 8
Author(s): Jin Tae Kim, Da Seul Hyeon, Kota Hanzawa, Ayaka Kanai, Se Yun Kim, YongJei Lee, Hideo Hosono, Joonho Bang, Kimoon Lee
Software Mentions: 1
Published: almost 7 years ago

10.3390/s20010156

Investigation and Modeling of Multi-Node Body Channel Wireless Power Transfer
Cited by: 3
Author(s): Yuxuan Huang, Jian Zhao, Wenyu Sun, Huazhong Yang, Yongpan Liu
Software Mentions: 1
Published: almost 5 years ago

10.1002/advs.202100481

Interplay between Spin‐Orbit Torques and Dzyaloshinskii‐Moriya Interactions in Ferrimagnetic Amorphous Alloys
Cited by: 6
Author(s): Yassine Quessab, Jun-Wen Xu, Golam Morshed, Avik W. Ghosh, Andrew D. Kent
Software Mentions: 1
Published: over 3 years ago