Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: mda

https://packages.ecosyste.ms/registries/pypi.org/packages/mda

Analysis Tools for MD Simulations
3 versions
Latest release: over 3 years ago
34 downloads last month

Papers Mentioning mda 23

10.1038/s42003-021-01757-3
Jaw shape and mechanical advantage are indicative of diet in Mesozoic mammals
Cited by: 20
Author(s): Nuria Melisa Morales-García, Pamela G. Gill, Christine M. Janis, Emily J. Rayfield
Software Mentions: 16
Published: over 3 years ago
10.3389/frai.2021.628441
Interpretability Versus Accuracy: A Comparison of Machine Learning Models Built Using Different Algorithms, Performance Measures, and Features to Predict E. coli Levels in Agricultural Water
Cited by: 12
Author(s): Daniel Weller, Tanzy Love, Martin Wiedmann
Software Mentions: 16
Published: over 3 years ago
10.3389/fneur.2019.01366
Prediction of Early TBI Mortality Using a Machine Learning Approach in a LMIC Population
Cited by: 39
Author(s): Robson Luís Oliveira de Amorim, Louise Makarem Oliveira, Luis Marcelo Malbouisson, Márcia Mitie Nagumo, Marcela Simoes, Leandro Miranda, Edson Bor‐Seng‐Shu, André Beer‐Furlan, Almir Ferreira de Andrade, Andrés M. Rubiano, Manoel Jacobsen Teixeira, Angelos G. Kolias, Wellingson Silva Paiva
Software Mentions: 15
Published: over 4 years ago
10.1371/journal.pone.0018850
Multiplexed Immunoassay Panel Identifies Novel CSF Biomarkers for Alzheimer's Disease Diagnosis and Prognosis
Cited by: 199
Author(s): Rebecca Craig‐Schapiro, Max Kühn, Chengjie Xiong, Eve H. Pickering, Jingxia Liu, Thomas P. Misko, Richard J. Perrin, Kelly R. Bales, Holly Soares, Anne M. Fagan, David M. Holtzman
Software Mentions: 15
Published: over 13 years ago
10.1038/s41598-020-69361-9
Effects of different intracranial volume correction methods on univariate sex differences in grey matter volume and multivariate sex prediction
Cited by: 28
Author(s): Carles Sanchis‐Segura, M.V. Ibáñez-Gual, Naiara Aguirre, Álvaro Javier Cruz-Gómez, Cristina Forn
Software Mentions: 14
Published: about 4 years ago
10.1371/journal.pone.0199277
Predictive performance of six mortality risk scores and the development of a novel model in a prospective cohort of patients undergoing valve surgery secondary to rheumatic fever
Cited by: 13
Author(s): Omar Asdrúbal Vilca Mejía, Manuel J. Antunes, Maxim Goncharov, Luís Alberto Oliveira Dallan, Elinthon Tavares Veronese, Gisele Aparecida Lapenna, Luiz Augusto Ferreira Lisboa, Carlos Manuel de Almeida Brandão, Jorge P. Zubelli, Flávio Tarasoutchi, Pablo Maria Alberto Pomerantzeff, Fábio Biscegli Jatene
Software Mentions: 13
Published: about 6 years ago
10.3390/foods10010143
Intramuscular Fat Prediction Using Color and Image Analysis of Bísaro Pork Breed
Cited by: 7
Author(s): Alfredo Teixeira, Severiano Silva, Marianne Hasse, José Almeida, Luís G. Dias
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pone.0128124
Oceanographic Conditions Limit the Spread of a Marine Invader along Southern African Shores
Cited by: 57
Author(s): Jorge Assis, Mirta Zupan, Katy R. Nicastro, Gerardo I. Zardi, Christopher D. McQuaid, Ester Á. Serrão
Software Mentions: 10
Published: about 9 years ago
10.1186/1471-2288-14-91
Comparing classification methods for diffuse reflectance spectra to improve tissue specific laser surgery
Cited by: 8
Author(s): Alexander Engelhardt, Rajesh Kanawade, Christian Knipfer, Matthias Schmid, Florian Stelzle, Werner Adler
Software Mentions: 9
Published: about 10 years ago
10.1186/s13742-015-0065-6
An image database of Drosophila melanogaster wings for phenomic and biometric analysis
Cited by: 26
Author(s): Anne Sonnenschein, David VanderZee, William Pitchers, Sudarshan Chari, Ian Dworkin
Software Mentions: 9
Published: over 9 years ago
10.1371/journal.pone.0131530
Genes Left Behind: Climate Change Threatens Cryptic Genetic Diversity in the Canopy-Forming Seaweed Bifurcaria bifurcata
Cited by: 46
Author(s): João Neiva, Jorge Assis, Nelson Castilho Coelho, Francisco Fernandes, Gareth A. Pearson, Ester Á. Serrão
Software Mentions: 8
Published: about 9 years ago
10.1186/s10020-019-0093-2
IgG Galactosylation status combined with MYOM2-rs2294066 precisely predicts anti-TNF response in ankylosing spondylitis
Cited by: 12
Author(s): Jing Liu, Qi Zhu, Jing Han, Hui Zhang, Yuan Li, Yanyun Ma, Dongyi He, Jianxin Gu, Xiaodong Zhou, John D. Reveille, Li Jin, Hejian Zou, Shifang Ren, Jiucun Wang
Software Mentions: 7
Published: over 5 years ago
10.1038/sdata.2018.292
The metabolic regimes of 356 rivers in the United States
Cited by: 60
Author(s): Alison P. Appling, Jordan S. Read, Luke Winslow, Maite Arroita, Emily S. Bernhardt, Natalie A. Griffiths, Robert O. Hall, Judson W. Harvey, James B. Heffernan, Emily H. Stanley, Edward G. Stets, Charles B. Yackulic
Software Mentions: 4
Published: almost 6 years ago
10.1038/s41598-020-75291-3
Assessing the susceptibility of schools to flood events in Iran
Cited by: 14
Author(s): Saleh Yousefi, Hamid Reza Pourghasemi, Sayed Naeim Emami, Omid Rahmati, Shahla Tavangar, Soheila Pouyan, John P. Tiefenbacher, Shahbaz Shamsoddini, Mohammad Nekoeimehr
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0145493
Potential of Diffusion Tensor Imaging and Relaxometry for the Detection of Specific Pathological Alterations in Parkinson's Disease (PD)
Cited by: 13
Author(s): Regina Esterhammer, Klaus Seppi, Eva Reiter, Bernadette Pinter, Christoph Mueller, Christian Kremser, Tanja Zitzelsberger, Michael Nocker, Christoph Scherfler, Werner Poewe, Michael Schocke
Software Mentions: 4
Published: over 8 years ago
10.3390/foods10071446
Application of Absorption and Scattering Properties Obtained through Image Pre-Classification Method Using a Laser Backscattering Imaging System to Detect Kiwifruit Chilling Injury
Cited by: 5
Author(s): Zhuo Yang, Mo Li, A.R. East, Manuela Zude-Sasse
Software Mentions: 3
Published: about 3 years ago
10.1186/s13007-018-0352-1
Hyperspectral imaging: a novel approach for plant root phenotyping
Cited by: 51
Author(s): Gernot Bodner, Alireza Nakhforoosh, Thomas Arnold, Daniel Leitner
Software Mentions: 3
Published: almost 6 years ago
10.1371/journal.pone.0149511
Mapping National Plant Biodiversity Patterns in South Korea with the MARS Species Distribution Model
Cited by: 20
Author(s): Hyeyeong Choe, James H. Thorne, Chang Ho Seo
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0146728
Testing Three Species Distribution Modelling Strategies to Define Fish Assemblage Reference Conditions for Stream Bioassessment and Related Applications
Cited by: 22
Author(s): Peter M. Rose, Mark J. Kennard, David B. Moffatt, Fran Sheldon, Gavin L. Butler
Software Mentions: 3
Published: over 8 years ago
10.3390/ijerph14121562
Impacts of the 2015 Heat Waves on Mortality in the Czech Republic—A Comparison with Previous Heat Waves
Cited by: 51
Author(s): Aleš Urban, Hana Hanzlíková, Jan Kyselý, Eva Plavcová
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0032586
Do Stacked Species Distribution Models Reflect Altitudinal Diversity Patterns?
Cited by: 76
Author(s): Rubén G. Mateo, Ángel M. Felicísimo, Julien Pottier, Antoine Guisan, Jesús Muñoz
Software Mentions: 2
Published: over 12 years ago
10.1371/journal.pone.0190754
Assessing shortfalls and complementary conservation areas for national plant biodiversity in South Korea
Cited by: 9
Author(s): Hyeyeong Choe, James H. Thorne, Patrick R. Huber, Dongkun Lee, James Quinn
Software Mentions: 2
Published: over 6 years ago
10.1107/S160057671901673X
<i>PyMDA</i>: microcrystal data assembly using Python
Cited by: 6
Author(s): Lina Takemaru, Gongrui Guo, Ping Zhu, Wayne A. Hendrickson, Seán McSweeney, Qun Liu
Software Mentions: 2
Published: over 4 years ago