Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: pcalg

https://packages.ecosyste.ms/registries/pypi.org/packages/pcalg

CPDAG Estimation using PC-Algorithm
11 versions
Latest release: over 2 years ago
167 downloads last month

Papers Mentioning pcalg 24

ChroMo, an Application for Unsupervised Analysis of Chromosome Movements in Meiosis
Cited by: 0
Author(s): Daniel León-Periñán, Alfonso Fernández-Álvarez
Software Mentions: 17
Published: about 3 years ago

10.1089/cmb.2019.0210

<i>bAIcis</i>: A Novel Bayesian Network Structural Learning Algorithm and Its Comprehensive Performance Evaluation Against Open-Source Software
Cited by: 10
Author(s): Lixia Zhang, Leonardo O. Rodrigues, Niven R. Narain, Viatcheslav R. Akmaev
Software Mentions: 9
Published: over 4 years ago

10.3389/fgene.2019.00460

Learning Causal Biological Networks With the Principle of Mendelian Randomization
Cited by: 37
Author(s): Md. Bahadur Badsha, Audrey Qiuyan Fu
Software Mentions: 9
Published: over 5 years ago

10.3389/fgene.2021.651812

MRPC: An R Package for Inference of Causal Graphs
Cited by: 2
Author(s): Md. Bahadur Badsha, Evan A Martin, Audrey Qiuyan Fu
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-84995-z

Genetic co-expression networks contribute to creating predictive model and exploring novel biomarkers for the prognosis of breast cancer
Cited by: 1
Author(s): Yuan-Kuei Li, Huan-Ming Hsu, Meng-Chiung Lin, Chi‐Wen Chang, Chi‐Ming Chu, Yu‐Jia Chang, Jyh‐Cherng Yu, Chien-Ting Chen, Chen-En Jian, Chien‐An Sun, Kanghua Chen, Ming-Hao Kuo, Chia-Shiang Cheng, Ya-Ting Chang, Yi-Syuan Wu, Hao-Yi Wu, Yating Yang, Chen Lin, Hung‐Che Lin, Je-Ming Hu, Yu-Tien Chang
Software Mentions: 6
Published: over 3 years ago

10.3389/fgene.2013.00303

Experimental assessment of static and dynamic algorithms for gene regulation inference from time series expression data
Cited by: 18
Author(s): Mário Lopes, Gianluca Bontempi
Software Mentions: 6
Published: over 11 years ago

10.1186/s12859-015-0856-x

3off2: A network reconstruction algorithm based on 2-point and 3-point information statistics
Cited by: 13
Author(s): Séverine Affeldt, Louis Verny, Hervé Isambert
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pcbi.1007866

Learning clinical networks from medical records based on information estimates in mixed-type data
Cited by: 8
Author(s): Vincent Cabeli, Louis Verny, Nadir Sella, Guido Uguzzoni, Marc Verny, Hervé Isambert
Software Mentions: 5
Published: over 4 years ago

10.1186/s12885-019-6462-y

Systematical identifications of prognostic meaningful lung adenocarcinoma subtypes and the underlying mutational and expressional characters
Cited by: 6
Author(s): Zhenyang Lv, Ting Lei
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-019-2872-8

Integration of probabilistic regulatory networks into constraint-based models of metabolism with applications to Alzheimer’s disease
Cited by: 12
Author(s): Han Yu, Rachael Hageman Blair
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-021-84905-3

Causal effects in microbiomes using interventional calculus
Cited by: 9
Author(s): Musfiqur Rahman Sazal, Vitalii Stebliankin, Kalai Mathee, Changwon Yoo, Giri Narasimhan
Software Mentions: 5
Published: over 3 years ago

10.1186/2043-9113-4-8

comoR: a software for disease comorbidity risk assessment
Cited by: 82
Author(s): Mohammad Ali Moni, Píetro Lió
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0234752

Bayesian networks established functional differences between breast cancer subtypes
Cited by: 5
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Rocío López-Vacas, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, María Ferrer-Gómez, Hilario Navarro, Paolo Nanni, Pilar Zamora, Enrique Espinosa, Paloma Maı́n, Juan Ángel Fresno Vara
Software Mentions: 5
Published: over 4 years ago

10.1186/1755-8794-6-S3-S1

A categorical network approach for discovering differentially expressed regulations in cancer
Cited by: 2
Author(s): Nikolay Balov
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0237277

Causal graph analysis of COVID-19 observational data in German districts reveals effects of determining factors on reported case numbers
Cited by: 14
Author(s): Edgar Steiger, Tobias Mussgnug, Lars Eric Kroll
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pcbi.1005662

Learning causal networks with latent variables from multivariate information in genomic data
Cited by: 29
Author(s): Louis Verny, Nadir Sella, Séverine Affeldt, Param Priya Singh, Hervé Isambert
Software Mentions: 3
Published: almost 7 years ago

10.3389/fgene.2018.00430

Learning Subject-Specific Directed Acyclic Graphs With Mixed Effects Structural Equation Models From Observational Data
Cited by: 3
Author(s): Xiang Li, Shanghong Xie, Peter McColgan, Sarah J. Tabrizi, Rachael I. Scahill, Donglin Zeng, Yuanjia Wang
Software Mentions: 3
Published: almost 6 years ago

10.3389/fpsyg.2021.648200

Cross-Linguistic Trade-Offs and Causal Relationships Between Cues to Grammatical Subject and Object, and the Problem of Efficiency-Related Explanations
Cited by: 7
Author(s): Natalia Levshina
Software Mentions: 2
Published: about 3 years ago

10.3389/fpsyg.2015.01702

Investigating the importance of self-theories of intelligence and musicality for students' academic and musical achievement
Cited by: 37
Author(s): Daniel Müllensiefen, Peter M. C. Harrison, Francesco Caprini, Amy Fancourt
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0150611

Reconstructing Causal Biological Networks through Active Learning
Cited by: 21
Author(s): Hyunghoon Cho, Bonnie Berger, Jian Peng
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0239990

Brown fat does not cause cachexia in cancer patients: A large retrospective longitudinal FDG-PET/CT cohort study
Cited by: 12
Author(s): Anton S. Becker, Caroline Zellweger, Sara Bacanovic, Sabine Franckenberg, Hannes W. Nagel, Lukas Frick, Khoschy Schawkat, Matthias Eberhard, Christian Blüthgen, Jörk Volbracht, Rudolf Moos, Christian Wolfrum, Irene A. Burger
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0243229

Causal relations of health indices inferred statistically using the DirectLiNGAM algorithm from big data of Osaka prefecture health checkups
Cited by: 4
Author(s): J. Kotoku, Asuka Oyama, Kanako Kitazumi, H. Toki, Akihiro Haga, Ryohei Yamamoto, Maki Shinzawa, Miyae Yamakawa, Sakiko Fukui, Keiichi Yamamoto, Toshiki Moriyama
Software Mentions: 2
Published: over 3 years ago

10.4172/2153-0602.1000163

Causal Inference in the Age of Decision Medicine
Cited by: 19
Author(s): Amirnaser Yazdani, Eric Boerwinkle
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2105-15-228

Estimating causal effects with a non-paranormal method for the design of efficient intervention experiments
Cited by: 3
Author(s): Reiji Teramoto, Chiaki Saito, Saburô Funahashi
Software Mentions: 2
Published: about 10 years ago