Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: glimmer

https://packages.ecosyste.ms/registries/pypi.org/packages/glimmer

Glimmer is a library built to implement content management systems for python web applications.
1 version
Latest release: over 4 years ago
5 downloads last month

Papers Mentioning glimmer 23

The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
Cited by: 32
Author(s): Jürgen Behr, Andreas Geißler, Jonas Schmid, Anja Zehe, Rudi F. Vogel
Software Mentions: 9
Published: over 8 years ago

10.1093/gbe/evab148

Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains
Cited by: 2
Author(s): Kun Wu, Zhou‐Hua Cheng, Emily Williams, Nathan T Turner, Dapeng Ran, Haichao Li, Xia Zhou, Huilin Guo, Way Sung, Dongfeng Liu, Michael Lynch, Hongan Long
Software Mentions: 5
Published: over 3 years ago

10.3389/fmicb.2012.00410

The Binning of Metagenomic Contigs for Microbial Physiology of Mixed Cultures
Cited by: 173
Author(s): Marc Strous, Beate Kraft, Regina Bisdorf, Halina E. Tegetmeyer
Software Mentions: 4
Published: almost 13 years ago

10.1111/j.1574-6976.2008.00146.x

Genome-scale models of bacterial metabolism: reconstruction and applications
Cited by: 284
Author(s): Maxime Durot, Pierre-Yves Bourguignon, Vincent Schächter
Software Mentions: 4
Published: almost 16 years ago

10.1038/s41598-020-62130-8

Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment
Cited by: 14
Author(s): Dinka Mandaković, Ángela Cintolesi, Jonathan Maldonado, Sebastián N. Mendoza, Méziane Aïte, Alexis Gaete, Francisco Saitua, Miguel L. Allende, Verónica Cambiazo, Anne Siegel, Alejandro Maass, Maurício González, Mauricio Latorre
Software Mentions: 3
Published: over 4 years ago

10.1186/s12917-017-1093-5

Whole genome sequencing of an ExPEC that caused fatal pneumonia at a pig farm in Changchun, China
Cited by: 9
Author(s): Lingcong Kong, Xulin Guo, Zi Wang, Yunhang Gao, Boyin Jia, Shuming Liu, Huiqin Ma
Software Mentions: 3
Published: over 7 years ago

10.1038/s41426-018-0116-z

Landscape of the genome and host cell response of <i>Mycobacterium shigaense</i> reveals pathogenic features
Cited by: 3
Author(s): Hua Jiang, Jiya Sun, Yanqing Chen, Zhiming Chen, Le Wang, Wei Gao, Ying Shi, Wenyue Zhang, You-Ming Mei, Santosh Chokkakula, Varalakshmi Vissa, Taijiao Jiang, Aiping Wu, Hongsheng Wang
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00835

In silico Identification of Serovar-Specific Genes for Salmonella Serotyping
Cited by: 13
Author(s): Xiaomei Zhang, Michael Payne, Ruiting Lan
Software Mentions: 2
Published: over 5 years ago

10.1186/s12870-019-1637-x

Characterization of the mitochondrial genome of the MAX1 type of cytoplasmic male-sterile sunflower
Cited by: 18
Author(s): Maksim Makarenko, А. В. Усатов, Tatiana V. Tatarinova, Kirill Azarin, Maria D. Logacheva, В. А. Гаврилова, Renate Horn
Software Mentions: 2
Published: almost 6 years ago

10.1128/genomeA.01580-15

Draft Genome of Debaryomyces fabryi CBS 789 <sup>T</sup> , Isolated from a Human Interdigital Mycotic Lesion
Cited by: 6
Author(s): Hakim Tafer, Katja Sterflinger, Ksenija Lopandić
Software Mentions: 2
Published: over 8 years ago

10.1186/1471-2164-10-351

Metabolic analysis of the soil microbe Dechloromonas aromatica str. RCB: indications of a surprisingly complex life-style and cryptic anaerobic pathways for aromatic degradation
Cited by: 154
Author(s): Kennan Kellaris Salinero, Kenneth H. Keller, William S. Feil, Helene Feil, Stephan Trong, Genevieve Di Bartolo, Alla Lapidus
Software Mentions: 2
Published: almost 16 years ago

10.3389/fmicb.2020.01188

Genome-Wide Identification of Effector Candidates With Conserved Motifs From the Wheat Leaf Rust Fungus Puccinia triticina
Cited by: 17
Author(s): Shuqing Zhao, Xiaofeng Shang, Weishuai Bi, Xiaoyan Yu, Daqun Liu, Zhensheng Kang, Xiaojie Wang, Xiaodong Wang
Software Mentions: 2
Published: over 4 years ago

10.1186/1471-2164-7-171

Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
Cited by: 127
Author(s): Boris A Legault, Arantxa López‐López, Jose Carlos Alba-Casado, W. Ford Doolittle, Henk Bolhuis, Francisco Rodríguez‐Valera, R. Thane Papke
Software Mentions: 2
Published: over 18 years ago

10.1186/1471-2105-11-39

An automatic method for identifying surface proteins in bacteria: SLEP
Cited by: 19
Author(s): Emanuela Giombini, Massimiliano Orsini, Danilo Carrabino, Anna Tramontano
Software Mentions: 2
Published: almost 15 years ago

10.1371/journal.pone.0000115

Detection of Conjugation Related Type Four Secretion Machinery in Aeromonas culicicola
Cited by: 14
Author(s): Ashraf Yusuf Rangrez, Kannayakanahalli M. Dayananda, Santosh S. Atanur, Rajendra Joshi, Milind S. Patole, Yogesh S. Shouche
Software Mentions: 2
Published: almost 18 years ago

10.3389/fmicb.2020.01464

Discovery of Three 22-Membered Macrolides by Deciphering the Streamlined Genome of Mangrove-Derived Streptomyces sp. HM190
Cited by: 5
Author(s): Yanghui Ye, Nusratgul Anwar, Xu‐Ming Mao, Shuai Wu, Cen Yan, Zhe Zhao, Ran Zhang, Yan-Fang Nie, Jianwei Zhang, Jidong Wang, Min Wu
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0122403

Genomic Analysis of a Mycobacterium Bovis Bacillus Calmette-Guérin Strain Isolated from an Adult Patient with Pulmonary Tuberculosis
Cited by: 6
Author(s): Xuming Li, Liping Chen, Yaping Zhu, Xia Yu, Jun Cao, Rui Wang, Xinyan Lv, Jin He, Aizhen Guo, Hairong Huang, Huajun Zheng, Siguo Liu
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0043002

Analysis of an Inactive Cyanobactin Biosynthetic Gene Cluster Leads to Discovery of New Natural Products from Strains of the Genus Microcystis
Cited by: 52
Author(s): Niina Leikoski, David P. Fewer, Jouni Jokela, Pirita Alakoski, Matti Wahlsten, Kaarina Sivonen
Software Mentions: 1
Published: about 12 years ago

10.3390/v7082835

Phage ΦPan70, a Putative Temperate Phage, Controls Pseudomonas aeruginosa in Planktonic, Biofilm and Burn Mouse Model Assays
Cited by: 38
Author(s): Angela V Holguín, Guillermo Rangel, Viviana Clavijo, Catalina Prada, Marcela Mantilla, María Catalina Gomez, Elizabeth Kutter, Corinda Taylor, Peter C. Fineran, Andrés Fernando González Barrios, Martha J. Vives
Software Mentions: 1
Published: over 9 years ago

10.3389/fmicb.2021.602902

JD419, a Staphylococcus aureus Phage With a Unique Morphology and Broad Host Range
Cited by: 16
Author(s): Tingting Feng, Sebastian Leptihn, Ke Dong, Belinda Loh, Yan Zhang, Melanie I. Stefan, Mingyue Li, Xiaokui Guo, Zelin Cui
Software Mentions: 1
Published: over 3 years ago

10.3389/fmicb.2016.01268

Tracking Cefoperazone/Sulbactam Resistance Development In vivo in A. baumannii Isolated from a Patient with Hospital-Acquired Pneumonia by Whole-Genome Sequencing
Cited by: 8
Author(s): Xiaofen Liu, Huajun Zheng, Weipeng Zhang, Zhen Shen, Miao Zhao, Yuancheng Chen, Li Sun, Jun Yi Shi, Jing Zhang
Software Mentions: 1
Published: over 8 years ago

10.1038/srep24255

Characterization of Discrete Phosphopantetheinyl Transferases in Streptomyces tsukubaensis L19 Unveils a Complicate Phosphopantetheinylation Network
Cited by: 16
Author(s): Yueyue Wang, Xiaosheng Zhang, Hongzhen Luo, Ni-Ni Ren, Xiaomo Jiang, Hui Jiang, Yongquan Li
Software Mentions: 1
Published: over 8 years ago

10.1038/srep26710

Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A
Cited by: 72
Author(s): Wuxing Liu, Qingling Wang, Jinyu Hou, Chen Tu, Yongming Luo, Peter Christie
Software Mentions: 1
Published: over 8 years ago