Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

cran projects 6,234

cran: polycor
Polychoric and Polyserial Correlations
Papers that mentioned: 44
cran: COUNT
Functions, Data and Code for Count Data
Papers that mentioned: 44
cran: pracma
Practical Numerical Math Functions
Papers that mentioned: 44
cran: emoji
Data and Function to Work with Emojis
Papers that mentioned: 44
cran: fossil
Palaeoecological and Palaeogeographical Analysis Tools
Papers that mentioned: 44
cran: ISAT
Extract Cell Density and Nearest Distance Based on 'PerkinElmer InForm' Software Output
Papers that mentioned: 44
cran: CTD
A Method for 'Connecting The Dots' in Weighted Graphs
Papers that mentioned: 44
cran: phylogram
Dendrograms for Evolutionary Analysis
Papers that mentioned: 44
cran: AMOEBA
A Multidirectional Optimum Ecotope-Based Algorithm
Papers that mentioned: 43
cran: h2o
R Interface for the 'H2O' Scalable Machine Learning Platform
Papers that mentioned: 43
cran: partykit
A Toolkit for Recursive Partytioning
Papers that mentioned: 43
cran: NLP
Natural Language Processing Infrastructure
Papers that mentioned: 43
cran: FME
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
Papers that mentioned: 43
cran: R2OpenBUGS
Running OpenBUGS from R
Papers that mentioned: 43
cran: GPArotation
Gradient Projection Factor Rotation
Papers that mentioned: 42
cran: nparcomp
Multiple Comparisons and Simultaneous Confidence Intervals
Papers that mentioned: 42
cran: SCI
Standardized Climate Indices Such as SPI, SRI or SPEI
Papers that mentioned: 42
cran: arules
Mining Association Rules and Frequent Itemsets
Papers that mentioned: 42
cran: rfPermute
Estimate Permutation p-Values for Random Forest Importance Metrics
Papers that mentioned: 42
cran: marmap
Import, Plot and Analyze Bathymetric and Topographic Data
Papers that mentioned: 42
cran: sm
Smoothing Methods for Nonparametric Regression and Density Estimation
Papers that mentioned: 42
cran: rgbif
Interface to the Global Biodiversity Information Facility API
Papers that mentioned: 42
cran: pca3d
Three Dimensional PCA Plots
Papers that mentioned: 42
cran: kit
Data Manipulation Functions Implemented in C
Papers that mentioned: 42
cran: generator
Generate Data Containing Fake Personally Identifiable Information
Papers that mentioned: 42
cran: adephylo
Exploratory Analyses for the Phylogenetic Comparative Method
Papers that mentioned: 42
cran: DDRTree
Learning Principal Graphs with DDRTree
Papers that mentioned: 42
cran: LSC
Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
Papers that mentioned: 42
cran: PMCMRplus
Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
Papers that mentioned: 41
cran: BioMark
Find Biomarkers in Two-Class Discrimination Problems
Papers that mentioned: 41
cran: PresenceAbsence
Presence-Absence Model Evaluation
Papers that mentioned: 41
cran: ggeffects
Create Tidy Data Frames of Marginal Effects for 'ggplot' from Model Outputs
Papers that mentioned: 41
cran: robustbase
Basic Robust Statistics
Papers that mentioned: 41
cran: IMD
Index of Multiple Deprivation Data for the UK
Papers that mentioned: 41
cran: RBF
Robust Backfitting
Papers that mentioned: 41
cran: TSP
Traveling Salesperson Problem (TSP)
Papers that mentioned: 41
cran: Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Papers that mentioned: 41
cran: NPS
Convenience Functions and Tests for Working With the Net Promoter Score (NPS)
Papers that mentioned: 40
cran: BIOMASS
Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests
Papers that mentioned: 40
cran: Zelig
Papers that mentioned: 40
cran: SAVER
Single-Cell RNA-Seq Gene Expression Recovery
Papers that mentioned: 40
cran: r2glmm
Computes R Squared for Mixed (Multilevel) Models
Papers that mentioned: 40
cran: ELT
Experience Life Tables
Papers that mentioned: 40
cran: GSM
Gamma Shape Mixture
Papers that mentioned: 40
cran: mlogit
Multinomial Logit Models
Papers that mentioned: 40
cran: OceanView
Visualisation of Oceanographic Data and Model Output
Papers that mentioned: 40
cran: MCMCpack
Markov Chain Monte Carlo (MCMC) Package
Papers that mentioned: 40
cran: DAMOCLES
Dynamic Assembly Model of Colonization, Local Extinction and Speciation
Papers that mentioned: 39
cran: Interact
Tests for marginal interactions in a 2 class response model
Papers that mentioned: 39
cran: broom
Convert Statistical Objects into Tidy Tibbles
Papers that mentioned: 39
cran: SI
Stochastic Integrating
Papers that mentioned: 39
cran: phylosignal
Exploring the Phylogenetic Signal in Continuous Traits
Papers that mentioned: 39
cran: RCA
Relational Class Analysis
Papers that mentioned: 39
cran: runjags
Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
Papers that mentioned: 39
cran: ADP
Adoption Probability, Triers and Users Rate of a New Product
Papers that mentioned: 39
cran: nFactors
Parallel Analysis and Other Non Graphical Solutions to the Cattell Scree Test
Papers that mentioned: 39
cran: flexsurv
Flexible Parametric Survival and Multi-State Models
Papers that mentioned: 39
cran: sommer
Solving Mixed Model Equations in R
Papers that mentioned: 39
cran: wordcloud
Word Clouds
Papers that mentioned: 39
cran: compositions
Compositional Data Analysis
Papers that mentioned: 39
cran: glasso
Graphical Lasso: Estimation of Gaussian Graphical Models
Papers that mentioned: 39
cran: pavo
Perceptual Analysis, Visualization and Organization of Spectral Colour Data
Papers that mentioned: 39
cran: PCS
Calculate the Probability of Correct Selection (PCS)
Papers that mentioned: 38
cran: Snake
Game of Snake
Papers that mentioned: 38
cran: patchwork
The Composer of Plots
Papers that mentioned: 38
cran: CRF
Conditional Random Fields
Papers that mentioned: 38
cran: elastic
General Purpose Interface to 'Elasticsearch'
Papers that mentioned: 38
cran: rmarkdown
Dynamic Documents for R
Papers that mentioned: 38
cran: compute.es
Compute Effect Sizes
Papers that mentioned: 38
cran: TT
Display Tree Structured Data using Datatable Widget (DT)
Papers that mentioned: 38
cran: BRugs
Interface to the 'OpenBUGS' MCMC Software
Papers that mentioned: 38
cran: TraMineR
Trajectory Miner: a Sequence Analysis Toolkit
Papers that mentioned: 38
cran: datos
Traduce al Español Varios Conjuntos de Datos de Práctica
Papers that mentioned: 37
cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: mapping
Automatic Download, Linking, Manipulating Coordinates for Maps
Papers that mentioned: 37
cran: epiDisplay
Epidemiological Data Display Package
Papers that mentioned: 37
cran: networkD3
D3 JavaScript Network Graphs from R
Papers that mentioned: 37
cran: epidata
Tools to Retrieve Economic Policy Institute Data Library Extracts
Papers that mentioned: 37
cran: neuralnet
Training of Neural Networks
Papers that mentioned: 37
cran: SimSeq
Nonparametric Simulation of RNA-Seq Data
Papers that mentioned: 36
cran: adespatial
Multivariate Multiscale Spatial Analysis
Papers that mentioned: 36
cran: jsonlite
A Simple and Robust JSON Parser and Generator for R
Papers that mentioned: 36
cran: RCurl
General Network (HTTP/FTP/...) Client Interface for R
Papers that mentioned: 36
cran: nose
nose Package for R
Papers that mentioned: 36
cran: tseries
Time Series Analysis and Computational Finance
Papers that mentioned: 36
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36
cran: rentrez
'Entrez' in R
Papers that mentioned: 36
cran: ASMap
Linkage Map Construction using the MSTmap Algorithm
Papers that mentioned: 36
cran: BlandAltmanLeh
Plots (Slightly Extended) Bland-Altman Plots
Papers that mentioned: 35
cran: dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
Papers that mentioned: 35
cran: ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Papers that mentioned: 35
cran: MTS
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
Papers that mentioned: 35
cran: BiocManager
Access the Bioconductor Project Package Repository
Papers that mentioned: 35
cran: openxlsx
Read, Write and Edit xlsx Files
Papers that mentioned: 35
cran: PopGenReport
A Simple Framework to Analyse Population and Landscape Genetic Data
Papers that mentioned: 35
cran: COR
The COR for Optimal Subset Selection in Distributed Estimation
Papers that mentioned: 35
cran: diveMove
Dive Analysis and Calibration
Papers that mentioned: 35
cran: locfit
Local Regression, Likelihood and Density Estimation
Papers that mentioned: 35
cran: PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Papers that mentioned: 35
cran: Rserve
Binary R server
Papers that mentioned: 35