cran: BioMark | Projects | Ecosyste.ms: Papers

10.1038/s42003-021-01659-4

Amynthas corticis genome reveals molecular mechanisms behind global distribution
Cited by: 4
Author(s): Xing Wang, Yi Zhang, Yufeng Zhang, Mingming Kang, Yuanbo Li, Samuel W. James, Yang Yang, Yang Bi, Hao Jiang, Yi Zhao, Zhenjun Sun
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0225658

Highly multiplexed quantitative PCR-based platform for evaluation of chicken immune responses
Cited by: 15
Author(s): Dominika Borowska, Richard Kuo, Richard Bailey, Kellie Watson, Pete Kaiser, Lonneke Vervelde, Mark P. Stevens
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-019-53155-9

PIPE-T: a new Galaxy tool for the analysis of RT-qPCR expression data
Cited by: 10
Author(s): Nicolò Zanardi, Martina Morini, M. A. Tangaro, Federico Zambelli, Maria Carla Bosco, Luigi Varesio, Alessandra Eva, Davide Cangelosi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0195472

Distinct seasonal infectious agent profiles in life-history variants of juvenile Fraser River Chinook salmon: An application of high-throughput genomic screening
Cited by: 33
Author(s): Strahan Tucker, Shaorong Li, Karia H. Kaukinen, David A. Patterson, Kristina M. Miller
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-016-3304-z

High-throughput gene-expression quantification of grapevine defense responses in the field using microfluidic dynamic arrays
Cited by: 32
Author(s): Marie‐Cécile Dufour, Noël Magnin, Bernard Dumas, Sophie Vergnes, Marie‐France Corio‐Costet
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0228974

Parental investment and immune dynamics in sex-role reversed pipefishes
Cited by: 4
Author(s): Isabel Keller, Olivia Roth
Software Mentions: 3
Published: almost 4 years ago

10.1038/s41598-019-45528-x

Loss of MafA and MafB expression promotes islet inflammation
Cited by: 13
Author(s): Tania Singh, Jesper K. Colberg, Luis Sarmiento, Patrícia Chaves, Lars Bolvig Hansen, Sara Bsharat, Luis Rodrigo Cataldo, Monika Dudenhöffer-Pfeifer, Malin Fex, David Bryder, Dan Holmberg, Ewa Sitnicka, Corrado Cilio, Rashmi B. Prasad, Isabella Artner
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-020-65847-8

A heritable profile of six miRNAs in autistic patients and mouse models
Cited by: 26
Author(s): Yusuf Özkul, Serpil Taheri, Keziban Korkmaz Bayramov, Elif Funda Şener, Ecmel Mehmetbeyoğlu, Didem Behice Öztop, Fatma Aybuga, Esra Tufan, Ruslan Bayramov, Nazan Dolu, Gökmen Zararsız, Leila Kianmehr, Feyzullah Beyaz, Züleyha Doğanyiğit, François Cuzin, Minoo Rassoulzadegan
Software Mentions: 3
Published: over 4 years ago

10.1038/srep13174

Comparison of four digital PCR platforms for accurate quantification of DNA copy number of a certified plasmid DNA reference material
Cited by: 120
Author(s): Dong Li, Ying Meng, Zhiwei Sui, Jingjing Wang, Liqing Wu, Boqiang Fu
Software Mentions: 2
Published: about 9 years ago

10.3390/metabo10040171

On the Use of Correlation and MI as a Measure of Metabolite—Metabolite Association for Network Differential Connectivity Analysis
Cited by: 18
Author(s): Sanjeevan Jahagirdar, Edoardo Saccenti
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2017.01083

Perturbation of B Cell Gene Expression Persists in HIV-Infected Children Despite Effective Antiretroviral Therapy and Predicts H1N1 Response
Cited by: 18
Author(s): Nicola Cotugno, Lesley de Armas, Suresh Pallikkuth, Stefano Rinaldi, Biju Issac, Alberto Cagigi, Paolo Rossi, Paolo Palma, Savita Pahwa
Software Mentions: 2
Published: about 7 years ago

10.1186/s12864-018-5108-9

Developing specific molecular biomarkers for thermal stress in salmonids
Cited by: 83
Author(s): Arash Akbarzadeh, Oliver P. Günther, Aimee Lee S. Houde, Shaorong Li, Tobi J. Ming, Kenneth M. Jeffries, Scott G. Hinch, Kristina M. Miller
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.ppat.1004566

Cellular Oxidative Stress Response Controls the Antiviral and Apoptotic Programs in Dengue Virus-Infected Dendritic Cells
Cited by: 194
Author(s): David Olagnier, Suraj Peri, Courtney Steel, Nadine van Montfoort, Cindy Chiang, Vladimir Beljanski, Michael Slifker, Zhong He, Carmen N. Nichols, Rongtuan Lin, Siddharth Balachandran, John Hiscott
Software Mentions: 2
Published: almost 10 years ago

10.1186/s13072-017-0157-x

H2A O-GlcNAcylation at serine 40 functions genomic protection in association with acetylated H2AZ or γH2AX
Cited by: 12
Author(s): Koji Hayakawa, Mitsuko Hirosawa, Ruiko Tani, Chikako Yoneda, Satoshi Tanaka, Kunio Shiota
Software Mentions: 2
Published: almost 7 years ago

10.1038/s41598-018-23832-2

Nucleosomes of polyploid trophoblast giant cells mostly consist of histone variants and form a loose chromatin structure
Cited by: 10
Author(s): Koji Hayakawa, Kanae Terada, Tomohiro Takahashi, Hidehiro Oana, Masao Washizu, Satoshi Tanaka
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0056799

Tacrolimus Inhibits the Revascularization of Isolated Pancreatic Islets
Cited by: 33
Author(s): Ryuichi Nishimura, Sho Nishioka, Ikuma Fujisawa, Hitoshi Shiku, M. Shimada, Satoshi Sekiguchi, Keisei Fujimori, Akira Ushiyama, Tomokazu Matsue, Noriaki Ohuchi, Susumu Satoh, Masafumi Goto
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0095927

Coxsackievirus Cloverleaf RNA Containing a 5′ Triphosphate Triggers an Antiviral Response via RIG-I Activation
Cited by: 15
Author(s): Feng Qian, Martijn A. Langereis, David Olagnier, Cindy Chiang, Roel van de Winkel, Peter van Essen, Jan Zoll, John Hiscott, Frank J. M. van Kuppeveld
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0001662

High Throughput Gene Expression Measurement with Real Time PCR in a Microfluidic Dynamic Array
Cited by: 341
Author(s): Sandra L. Spurgeon, Robert C. Jones, Ramesh Ramakrishnan
Software Mentions: 1
Published: over 16 years ago

10.3389/fcimb.2014.00103

High-throughput screening of tick-borne pathogens in Europe
Cited by: 189
Author(s): Lorraine Michelet, Sabine Delannoy, Elodie Devillers, Gérald Umhang, Anna Aspán, Mikael Juremalm, Jan Chirico, F.J. van der Wal, Hein Sprong, Thomas Peter Boye Pihl, Kirstine Klitgaard, René Bødker, Patrick Fach, Sara Moutailler
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2021.645002

High Diversity, Prevalence, and Co-infection Rates of Tick-Borne Pathogens in Ticks and Wildlife Hosts in an Urban Area in Romania
Cited by: 16
Author(s): Silvia-Diana Borșan, Angela Monica Ionică, Clémence Galon, Andra Toma-Naic, Cosmin Peştean, Attila D. Sándor, Sara Moutailler, Andrei Daniel Mihalca
Software Mentions: 1
Published: over 3 years ago

10.3389/fneur.2021.692840

Electrophysiological Screening for Children With Suspected Auditory Processing Disorder: A Systematic Review
Cited by: 3
Author(s): Panting Liu, Huiqin Zhu, Mingxia Chen, Hong Qin, Xia Chi
Software Mentions: 1
Published: about 3 years ago

10.1534/g3.115.020222

Linkage Mapping Reveals Strong Chiasma Interference in Sockeye Salmon: Implications for Interpreting Genomic Data
Cited by: 20
Author(s): Morten T. Limborg, Ryan K. Waples, Fred W. Allendorf, James E. Seeb
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep14347

Dynamic expression of chromatin modifiers during developmental transitions in mouse preimplantation embryos
Cited by: 20
Author(s): Peter Nestorov, Hans-Rudolf Hotz, Zichuan Liu, Antoine H.F.M. Peters
Software Mentions: 1
Published: almost 9 years ago

10.7554/eLife.03609

Gamma delta T cells recognize haptens and mount a hapten-specific response
Cited by: 23
Author(s): Xun Zeng, Christina Meyer, Jun Huang, Evan W. Newell, Brian Kidd, Yu-Ling Wei, Yueh‐hsiu Chien
Software Mentions: 1
Published: almost 10 years ago

10.1186/s12885-017-3352-z

Fluorescent CXCR4 targeting peptide as alternative for antibody staining in Ewing sarcoma
Cited by: 5
Author(s): Laurens G.L. Sand, Tessa Buckle, Fijs W. B. van Leeuwen, Willem E. Corver, Alwine B. Kruisselbrink, Aart G. Jochemsen, Pancras C.W. Hogendoorn, Károly Szuhai
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms17030402

A Novel Pretreatment-Free Duplex Chamber Digital PCR Detection System for the Absolute Quantitation of GMO Samples
Cited by: 20
Author(s): Pengyu Zhu, Chenguang Wang, Kunlun Huang, Yunbo Luo, Wentao Xu
Software Mentions: 1
Published: over 8 years ago

10.1186/s12862-017-1109-6

Parental investment matters for maternal and offspring immune defense in the mouthbrooding cichlid Astatotilapia burtoni
Cited by: 7
Author(s): Isabel Keller, Walter Salzburger, Olivia Roth
Software Mentions: 1
Published: almost 7 years ago

10.1186/1471-2164-13-521

Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing
Cited by: 53
Author(s): Meredith V. Everett, Michael R. Miller, James E. Seeb
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-10-561

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays
Cited by: 137
Author(s): Jun Wang, Min Lin, Andrew Crenshaw, Amy Hutchinson, Belynda Hicks, Meredith Yeager, Sonja I. Berndt, Wen Yi Huang, Richard B. Hayes, Stephen J. Chanock, Robert C. Jones, Ramesh Ramakrishnan
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2164-15-379

Evaluation of high throughput gene expression platforms using a genomic biomarker signature for prediction of skin sensitization
Cited by: 21
Author(s): Andy Forreryd, Henrik Johansson, Ann-Sofie Albrekt, Malin Lindstedt
Software Mentions: 1
Published: over 10 years ago

10.1186/s13104-017-2461-8

Performance of variable selection methods using stability-based selection
Cited by: 5
Author(s): Danny Lu, Aalim M. Weljie, Alexander R. de Leon, Yarrow J. McConnell, Oliver F. Bathe, Karen Kopciuk
Software Mentions: 1
Published: over 7 years ago

10.1155/2017/7804763

Circulating MicroRNAs as Potential Biomarkers of Atrial Fibrillation
Cited by: 23
Author(s): Ananília Medeiros Gomes da Silva, Jéssica Nayara Góes de Araújo, Renata Caroline Costa de Freitas, Vivian Nogueira Silbiger
Software Mentions: 1
Published: over 7 years ago

10.1007/s00262-016-1862-1

Expression of CCL21 in Ewing sarcoma shows an inverse correlation with metastases and is a candidate target for immunotherapy
Cited by: 13
Author(s): Laurens G.L. Sand, Dagmar Berghuis, Károly Szuhai, Pancras C.W. Hogendoorn
Software Mentions: 1
Published: about 8 years ago

10.1186/s12934-020-01477-z

Anti-cancer and anti-inflammatory effects elicited by short chain fatty acids produced by Escherichia coli isolated from healthy human gut microbiota
Cited by: 65
Author(s): Atchareeya Nakkarach, Hooi Ling Foo, Adelene Ai‐Lian Song, Nur Elina Abdul Mutalib, Sunee Nitisinprasert, Ulaiwan Withayagiat
Software Mentions: 1
Published: over 3 years ago

10.1016/j.ymthe.2017.04.022

Activation of Nrf2 Signaling Augments Vesicular Stomatitis Virus Oncolysis via Autophagy-Driven Suppression of Antiviral Immunity
Cited by: 55
Author(s): David Olagnier, Rassin Lababidi, Samar Bel Hadj, Alexandre Sze, Yiliu Liu, Sharadha Dayalan Naidu, Matteo Ferrari, Yuan Jiang, Cindy Chiang, Vladimir Beljanski, Marie Goulet, Elena V. Knatko, Albena T. Dinkova‐Kostova, John Hiscott, Rongtuan Lin
Software Mentions: 1
Published: about 7 years ago

10.48101/ujms.v126.7603

The The relationship between NLRP3 rs10159239 and Vaspin rs2236242 gene variants and obstructive sleep apnea
Cited by: 5
Author(s): Buğra Kerget, Ferhan Kerget, Çiğdem Yüce Kahraman, Alperen Aksakal, Ömer Araz
Software Mentions: 1
Published: over 3 years ago

10.1186/s13567-017-0423-8

Cytokine response to the RSV antigen delivered by dendritic cell-directed vaccination in congenic chicken lines
Cited by: 8
Author(s): Jitka Mucksová, Jiřı́ Plachý, Ondřej Staněk, Jiřı́ Hejnar, Jiří Kalina, Barbora Benešová, Pavel Trefil
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0051153

Mutation Scanning Using MUT-MAP, a High-Throughput, Microfluidic Chip-Based, Multi-Analyte Panel
Cited by: 24
Author(s): Rajesh Patel, Alison Tsan, Rachel Tam, Rupal Desai, Nancy Schoenbrunner, Thomas W. Myers, Keith Bauer, E. J. Smith, Rajiv Raja
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0037833

Integrative Gene Regulatory Network Analysis Reveals Light-Induced Regional Gene Expression Phase Shift Programs in the Mouse Suprachiasmatic Nucleus
Cited by: 14
Author(s): Haisun Zhu, Rajanikanth Vadigepalli, Rachel Rafferty, Gregory E. Gonye, David R. Weaver, James S. Schwaber
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0028530

Human Embryonic Stem Cells Express Elevated Levels of Multiple Pro-Apoptotic BCL-2 Family Members
Cited by: 33
Author(s): David T. Madden, Diana Davila-Kruger, Simon Melov, Dale E. Bredesen
Software Mentions: 1
Published: almost 13 years ago

Projects: cran: BioMark

Papers Mentioning BioMark 41