Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: runjags

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/runjags

Interface Utilities, Model Templates, Parallel Computing Methods and Additional Distributions for MCMC Models in JAGS
31 versions
Latest release: 10 months ago
29 dependent packages
5,982 downloads last month

Papers Mentioning runjags 39

10.1371/journal.pone.0231744
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
Cited by: 11
Author(s): Dustin A. Wood, Jonathan P. Rose, Brian J. Halstead, Ricka E. Stoelting, Karen E. Swaim, Amy G. Vandergast
Software Mentions: 8
Published: about 4 years ago
10.1186/s12917-016-0723-7
Implementation of an extended ZINB model in the study of low levels of natural gastrointestinal nematode infections in adult sheep
Cited by: 7
Author(s): Marina Atlija, Joaquín M. Prada, Beatriz Gutiérrez-Gil, F.A. Rojo-Vázquez, M. J. Stear, J. J. Arranz, María Martínez‐Valladares
Software Mentions: 5
Published: almost 8 years ago
10.1002/ece3.7746
Black Scoter habitat use along the southeastern coast of the United States
Cited by: 0
Author(s): Hannah M. Plumpton, Emily Silverman, Beth E. Ross
Software Mentions: 5
Published: almost 3 years ago
10.1038/s41598-021-95960-1
Modelling menstrual cycle length in athletes using state-space models
Cited by: 9
Author(s): Thiago de Paula Oliveira, Georgie Bruinvels, Charles R. Pedlar, Brian Moore, John Newell
Software Mentions: 5
Published: almost 3 years ago
10.3389/fpsyg.2020.586246
Perceived Impact of Covid-19 Across Different Mental Disorders: A Study on Disorder-Specific Symptoms, Psychosocial Stress and Behavior
Cited by: 71
Author(s): Hannah L. Quittkat, Rainer Düsing, Friederike-Johanna Holtmann, Ulrike Buhlmann, Jennifer Svaldi, Silja Vocks
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.7372
Integrating high‐speed videos in capture‐mark‐recapture studies of insects
Cited by: 0
Author(s): Rassim Khelifa, Hayat Mahdjoub, Leithen K. M’Gonigle, Claire Kremen
Software Mentions: 4
Published: about 3 years ago
10.1186/s13620-021-00204-3
Identification of different attitudes towards paratuberculosis control using cluster analysis applied on data from an anonymous survey among German cattle farmers
Cited by: 2
Author(s): Veit Zoche-Golob, R. Pützschel, Esra Einax, Karsten Donat
Software Mentions: 4
Published: over 2 years ago
10.1371/journal.pntd.0008655
Practical and effective diagnosis of animal anthrax in endemic low-resource settings
Cited by: 14
Author(s): Olubunmi Rhoda Aminu, Tiziana Lembo, Ruth N. Zadoks, Roman Biek, Suzanna Lewis, Ireen Kiwelu, Blandina T Mmbaga, Deogratius Mshanga, Gabriel Shirima, Matt Denwood, Taya Forde
Software Mentions: 4
Published: over 3 years ago
10.1002/ece3.7627
Challenges and opportunities for comparative studies of survival rates: An example with male pinnipeds
Cited by: 1
Author(s): Jamie L. Brusa, Jay J. Rotella, Katharine M. Banner, Patrick R. Hutchins
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.4769
Divergent patterns of telomere shortening in tropical compared to temperate stonechats
Cited by: 8
Author(s): Beate A. Apfelbeck, Mark F. Haussmann, Winnie Boner, Heiner Flinks, Kate Griffiths, Juan Carlos Illera, Kim Geraldine Mortega, Zachary Sisson, Patrick Smiddy, Barbara Helm
Software Mentions: 3
Published: over 5 years ago
10.1186/s12862-017-0960-9
Baseline and stress-induced levels of corticosterone in male and female Afrotropical and European temperate stonechats during breeding
Cited by: 12
Author(s): Beate A. Apfelbeck, Barbara Helm, Juan Carlos Illera, Kim Geraldine Mortega, Patrick Smiddy, Neil P. Evans
Software Mentions: 3
Published: about 7 years ago
10.1371/journal.pone.0243423
Detection of fish movement patterns across management unit boundaries using age-structured Bayesian hierarchical models with tag-recovery data
Cited by: 1
Author(s): Rujia Bi, Can Zhou, Yan Jiao
Software Mentions: 3
Published: over 3 years ago
10.1093/aobpla/plx044
Effects of model-mimic frequency on insect visitation and plant reproduction in a self-mimicry pollination system
Cited by: 2
Author(s): Rubem Samuel de Ávila, Suiane Santos Oleques, Brisa Marciniak, José Ricardo Inácio Ribeiro
Software Mentions: 2
Published: over 6 years ago
10.12688/wellcomeopenres.15849.3
COVID-19 – exploring the implications of long-term condition type and extent of multimorbidity on years of life lost: a modelling study
Cited by: 36
Author(s): Peter Hanlon, Fergus Chadwick, Anoop Shah, Rachael Wood, Jon Minton, Gerry McCartney, Colin Fischbacher, Frances S Mair, Dirk Husmeier, Jason Matthiopoulos, David McAllister
Software Mentions: 2
Published: over 3 years ago
10.1186/s13071-017-2580-z
Understanding the relationship between egg- and antigen-based diagnostics of Schistosoma mansoni infection pre- and post-treatment in Uganda
Cited by: 27
Author(s): Joaquín M. Prada, Panayiota Touloupou, Moses Adriko, Edridah M. Tukahebwa, Poppy H. L. Lamberton, T. Déirdre Hollingsworth
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0071395
Patterns of Ecosystem Metabolism in the Tonle Sap Lake, Cambodia with Links to Capture Fisheries
Cited by: 47
Author(s): Gordon W. Holtgrieve, Mauricio E. Arias, Kim N. Irvine, Dirk Lamberts, Eric J. Ward, Matti Kummu, Jorma Koponen, Juha Sarkkula, Jeffrey E. Richey
Software Mentions: 2
Published: almost 11 years ago
10.1371/journal.pone.0237309
How sure are you? A web-based application to confront imperfect detection of respiratory pathogens in bighorn sheep
Cited by: 2
Author(s): J. Terrill Paterson, Carson J. Butler, Robert A. Garrott, Kelly M. Proffitt
Software Mentions: 2
Published: over 3 years ago
10.3389/fpsyt.2020.00615
Comparing Models of the Children’s Yale-Brown Obsessive-Compulsive Scale (CY-BOCS) in an Italian Clinical Sample
Cited by: 1
Author(s): Caterina Novara, Susanna Pardini, Francesco Cardona, Massimiliano Pastore
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.ppat.1005526
Identification of Low- and High-Impact Hemagglutinin Amino Acid Substitutions That Drive Antigenic Drift of Influenza A(H1N1) Viruses
Cited by: 54
Author(s): William T. Harvey, D.J. Benton, Victoria Gregory, James P. J. Hall, Rodney S. Daniels, Trevor Bedford, Daniel T. Haydon, Alan J. Hay, John W. McCauley, Richard Reeve
Software Mentions: 2
Published: about 8 years ago
10.1098/rsos.181113
Behavioural thermoregulation via microhabitat selection of winter sleeping areas in an endangered primate: implications for habitat conservation
Cited by: 8
Author(s): Liz A. D. Campbell, Patrick J. Tkaczynski, Mohamed Mouna, Abderrahim Derrou, Lahcen Oukannou, Bonaventura Majolo, Els van Lavieren
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-021-90495-x
Influence of intrinsic and extrinsic attributes on neonate survival in an invasive large mammal
Cited by: 8
Author(s): Sarah M. Chinn, John C. Kilgo, Mark Vukovich, James C. Beasley
Software Mentions: 2
Published: about 3 years ago
10.1002/jts.22614
Bayesian Time‐Series Models in Single Case Experimental Designs: A Tutorial for Trauma Researchers
Cited by: 6
Author(s): Prathiba Natesan, Ateka A. Contractor, Stephanie V. Caldas
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0173752
Toward a phenological mismatch in estuarine pelagic food web?
Cited by: 30
Author(s): Xavier Chevillot, Hilaire Drouineau, Patrick Lambert, Laure Carassou, Benoît Sautour, Jérémy Lobry
Software Mentions: 1
Published: about 7 years ago
10.1002/ece3.2573
Evaluating within‐population variability in behavior and demography for the adaptive potential of a dispersal‐limited species to climate change
Cited by: 27
Author(s): David Muñóz, Kyle Miller Hesed, Evan H. Campbell Grant, David A. W. Miller
Software Mentions: 1
Published: over 7 years ago
10.1002/ece3.1679
Estimating occupancy dynamics for large‐scale monitoring networks: amphibian breeding occupancy across protected areas in the northeast United States
Cited by: 25
Author(s): David A. W. Miller, Evan H. Campbell Grant
Software Mentions: 1
Published: over 8 years ago
10.1186/1756-3305-7-48
The effectiveness of faecal removal methods of pasture management to control the cyathostomin burden of donkeys
Cited by: 40
Author(s): Christopher Corbett, S. Love, Anna Jane Moore, Faith Burden, J. B. Matthews, Matthew Denwood
Software Mentions: 1
Published: over 10 years ago
10.1002/ece3.7034
A multispecies approach to manage effects of land cover and weather on upland game birds
Cited by: 4
Author(s): Alexander R. Schindler, David A. Haukos, Christian A. Hagen, Beth E. Ross
Software Mentions: 1
Published: over 3 years ago
10.1186/s12917-019-1818-8
Field validation of clinical and laboratory diagnosis of wildebeest associated malignant catarrhal fever in cattle
Cited by: 5
Author(s): Sheillah Ayiela Orono, George C. Gitao, Jean Pierre M. Mpatswenumugabo, Maureen Chepkwony, Christine Mutisya, Edward Okoth, Barend Mark de Clare Bronsvoort, George C. Russell, Vishvanath Nene, Elizabeth A. J. Cook
Software Mentions: 1
Published: over 5 years ago
10.1016/j.envint.2019.05.006
Regional inequalities in benzene exposures across the European petrochemical industry: A Bayesian multilevel modelling approach
Cited by: 32
Author(s): Calvin Jephcote, Alice Mah
Software Mentions: 1
Published: over 4 years ago
10.3389/fmicb.2017.01139
Quantification of Salmonella Survival and Infection in an In vitro Model of the Human Intestinal Tract as Proxy for Foodborne Pathogens
Cited by: 8
Author(s): Lucas M. Wijnands, Peter Teunis, A. F. A. Kuijpers, Ellen H. M. Delfgou-van Asch, Annemarie Pielaat
Software Mentions: 1
Published: almost 7 years ago
10.1038/s41598-018-25671-7
Online videos indicate human and dog behaviour preceding dog bites and the context in which bites occur
Cited by: 24
Author(s): Sara C. Owczarczak‐Garstecka, Francine Watkins, Rob Christley
Software Mentions: 1
Published: about 6 years ago
10.1186/s12874-019-0773-1
Comparison of a time-varying covariate model and a joint model of time-to-event outcomes in the presence of measurement error and interval censoring: application to kidney transplantation
Cited by: 7
Author(s): Kristen Campbell, Elizabeth Juarez‐Colunga, Gary K. Grunwald, James E. Cooper, Scott Davis, Jane Gralla
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0219244
Traditional trapping methods outperform eDNA sampling for introduced semi-aquatic snakes
Cited by: 24
Author(s): Jonathan P. Rose, Cara Wademan, Suzanne Weir, John S. Wood, Brian D. Todd
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0247785
A comparison of fragmenting lead-based and lead-free bullets for aerial shooting of wild pigs
Cited by: 13
Author(s): Jordan O. Hampton, Grant Eccles, Rob Hunt, Andrew J. Bengsen, Andrew L. Perry, Steve Parker, Corissa J. Miller, Steve K Joslyn, Sigbjørn Stokke, Jon M. Arnemo, Quentin Hart
Software Mentions: 1
Published: about 3 years ago
10.1186/s12862-017-0944-9
Testosterone, territorial response, and song in seasonally breeding tropical and temperate stonechats
Cited by: 11
Author(s): Beate A. Apfelbeck, Kim Geraldine Mortega, Heiner Flinks, Juan Carlos Illera, Barbara Helm
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0240989
A multi-species occupancy modeling approach to access the impacts of land use and land cover on terrestrial vertebrates in the Mumbai Metropolitan Region (MMR), Western Ghats, India
Cited by: 4
Author(s): Sameer B. Bajaru, Saunak Pal, Mrugank Prabhu, Peysh A Patel, Rahul Khot, Deepak Apte
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0181775
A dissociation between engagement and learning: Enthusiastic instructions fail to reliably improve performance on a memory task
Cited by: 9
Author(s): Benjamin Motz, Joshua de Leeuw, Paulo F. Carvalho, Kaley L Liang, Robert L. Goldstone
Software Mentions: 1
Published: almost 7 years ago
10.1186/s12874-021-01294-x
Dynamic prediction based on variability of a longitudinal biomarker
Cited by: 3
Author(s): Kristen Campbell, Rui Martins, Scott Davis, Elizabeth Juarez‐Colunga
Software Mentions: 1
Published: about 3 years ago
10.1371/journal.pone.0226492
An improved understanding of ungulate population dynamics using count data: Insights from western Montana
Cited by: 5
Author(s): J. Terrill Paterson, Kelly M. Proffitt, Jay J. Rotella, Robert A. Garrott
Software Mentions: 1
Published: over 4 years ago