cran: sommer | Projects | Ecosyste.ms: Papers

10.1007/s00122-020-03716-8

Linear models for diallel crosses: a review with R functions
Cited by: 11
Author(s): Andrea Onofri, Niccolò Terzaroli, Luigi Russi
Software Mentions: 19
Published: almost 4 years ago

10.1371/journal.pone.0156744

Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer
Cited by: 408
Author(s): Giovanny Covarrubias‐Pazaran
Software Mentions: 9
Published: over 8 years ago

10.1534/g3.120.401193

MoBPS - Modular Breeding Program Simulator
Cited by: 33
Author(s): Torsten Pook, Martin Schlather, Henner Simianer
Software Mentions: 9
Published: over 4 years ago

lme4GS: An R-Package for Genomic Selection
Cited by: 8
Author(s): Diana Caamal-Pat, Paulino Pérez‐Rodríguez, José Crossa, Ciro Velasco‐Cruz, Sergio Pérez-Elizalde, Mario Alberto Vázquez-Peña
Software Mentions: 8
Published: over 3 years ago

10.1534/g3.119.400126

An R Package for Bayesian Analysis of Multi-environment and Multi-trait Multi-environment Data for Genome-Based Prediction
Cited by: 38
Author(s): Osval A. Montesinos-L֯ópez, Abelardo Montesinos‐López, Francisco Javier Luna-Vázquez, Fernando H. Toledo, Paulino Pérez‐Rodríguez, Morten Lillemo, J. Crossa
Software Mentions: 8
Published: over 5 years ago

10.1007/s00122-021-03882-3

Genomic signatures of selection for resistance to stripe rust in Austrian winter wheat
Cited by: 2
Author(s): Laura Morales, Sebastian Michel, Christian Ametz, Hermann Gregor Dallinger, Franziska Löschenberger, Anton Neumayer, Simone Zimmerl, Hermann Buerstmayr
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0224920

Cassava yield traits predicted by genomic selection methods
Cited by: 31
Author(s): Luciano Rogério Braatz de Andrade, Massáine Bandeira e Sousa, E. J. de Oliveira, Marcos Deon Vilela de Resende, Camila Ferreira Azevedo
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pgen.1008984

Natural variation in a glucuronosyltransferase modulates propionate sensitivity in a C. elegans propionic acidemia model
Cited by: 16
Author(s): Huimin Na, Stefan Zdraljevic, Robyn E. Tanny, Albertha J.M. Walhout, Erik C. Andersen
Software Mentions: 7
Published: about 4 years ago

10.3389/fgene.2021.667358

Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes
Cited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: over 3 years ago

10.1007/s00122-020-03759-x

Multi-omics-based prediction of hybrid performance in canola
Cited by: 19
Author(s): Dominic Knoch, Christian R. Werner, Rhonda C. Meyer, David Riewe, Amine Abbadi, Sophie Lücke, Rod J. Snowdon, Thomas Altmann
Software Mentions: 5
Published: over 3 years ago

10.3390/genes11121512

You Had Me at “MAGIC”!: Four Barley MAGIC Populations Reveal Novel Resistance QTL for Powdery Mildew
Cited by: 13
Author(s): Fluturë Novakazi, Lene Krusell, J. Jensen, Jihad Orabi, A. Jahoor, Tommy Bengtsson
Software Mentions: 5
Published: almost 4 years ago

10.1534/g3.119.400968

Multi-trait Genomic Prediction Model Increased the Predictive Ability for Agronomic and Malting Quality Traits in Barley (<i>Hordeum vulgare</i> L.)
Cited by: 54
Author(s): Madhav Bhatta, Lucı́a Gutiérrez, Lorena Cammarota, Fernanda Cardozo, Silvia Germán, Blanca Gómez-Guerrero, María Fernanda Pardo, Valeria Lanaro, Mercedes Sayas, Ariel J. Castro
Software Mentions: 5
Published: over 4 years ago

10.1038/s42003-021-01840-9

Overcoming barriers to the registration of new plant varieties under the DUS system
Cited by: 9
Author(s): Chin Jian Yang, Joanne Russell, Luke Ramsay, William Thomas, W. Powell, Ian Mackay
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2019.01570

Genetic Correlation, Genome-Wide Association and Genomic Prediction of Portable NIRS Predicted Carotenoids in Cassava Roots
Cited by: 18
Author(s): Ugochukwu N. Ikeogu, Deniz Akdemir, Wolfe, Uche Godfrey Okeke, Chinedozi Amaefula, Jean‐Luc Jannink, Chiedozie Egesi
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pgen.1007978

Fast and flexible linear mixed models for genome-wide genetics
Cited by: 46
Author(s): Daniel E. Runcie, Lorin Crawford
Software Mentions: 4
Published: over 5 years ago

10.3389/fpls.2021.658267

Optimizing Genomic-Enabled Prediction in Small-Scale Maize Hybrid Breeding Programs: A Roadmap Review
Cited by: 11
Author(s): Roberto Fritsche‐Neto, Giovanni Galli, Karina Lima Reis Borges, Germano Costa‐Neto, Filipe Couto Alves, Felipe Sabadin, Danilo Hottis Lyra, Pedro Patric Pinho Morais, Luciano Rogério Braatz de Andrade, Ítalo Stefanine Correia Granato, José Crossa
Software Mentions: 4
Published: about 3 years ago

10.1534/genetics.120.303080

Multiple QTL Mapping in Autopolyploids: A Random-Effect Model Approach with Application in a Hexaploid Sweetpotato Full-Sib Population
Cited by: 35
Author(s): Guilherme da Silva Pereira, Dorcus C. Gemenet, Marcelo Mollinari, Bode A. Olukolu, Joshua C. Wood, Federico Díaz, Veronica Mosquera, Wolfgang J. Grüneberg, Awais Khan, C. Robin Buell, G. Craig Yencho, Zhao‐Bang Zeng
Software Mentions: 4
Published: about 4 years ago

10.1534/genetics.119.302757

Historical Introgressions from a Wild Relative of Modern Cassava Improved Important Traits and May Be Under Balancing Selection
Cited by: 26
Author(s): Marnin D. Wolfe, Guillaume Bauchet, A. M. C. Chan, Roberto Lozano, Punna Ramu, Chiedozie Egesi, Robert Kawuki, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.40260

Natural variation in C. elegans arsenic toxicity is explained by differences in branched chain amino acid metabolism
Cited by: 65
Author(s): Stefan Zdraljevic, Bennett W. Fox, Christine Strand, Oishika Panda, Francisco J. Tenjo, Shannon C. Brady, Timothy A. Crombie, John G. Doench, Frank C. Schroeder, Erik C. Andersen
Software Mentions: 3
Published: over 5 years ago

10.3389/fpls.2019.01195

Improving and Maintaining Winter Hardiness and Frost Tolerance in Bread Wheat by Genomic Selection
Cited by: 17
Author(s): Sebastian Michel, Franziska Löschenberger, Jakob Hellinger, Verena Strasser, Christian Ametz, Bernadette Pachler, Ellen Sparry, Hermann Buerstmayr
Software Mentions: 3
Published: almost 5 years ago

10.1038/s41598-020-77069-z

Genomic selection for heterobothriosis resistance concurrent with body size in the tiger pufferfish, Takifugu rubripes
Cited by: 10
Author(s): Zijie Lin, S. Hosoya, Mana Sato, Naoki Mizuno, Yuki Kobayashi, Takuya Itou, Kiyoshi Kikuchi
Software Mentions: 3
Published: almost 4 years ago

10.1007/s00122-017-2998-x

Improving the baking quality of bread wheat by genomic selection in early generations
Cited by: 58
Author(s): Sebastian Michel, Christian Kummer, Martin Gallee, Jakob Hellinger, Christian Ametz, Batuhan Akgöl, Doru Gabriel Epure, Franziska Löschenberger, Hermann Buerstmayr
Software Mentions: 3
Published: almost 7 years ago

10.1007/s00122-019-03386-1

Combining grain yield, protein content and protein quality by multi-trait genomic selection in bread wheat
Cited by: 28
Author(s): Sebastian Michel, Franziska Löschenberger, Christian Ametz, Bernadette Pachler, Ellen Sparry, Hermann Buerstmayr
Software Mentions: 3
Published: about 5 years ago

10.3390/genes12010114

Merging Genomics and Transcriptomics for Predicting Fusarium Head Blight Resistance in Wheat
Cited by: 7
Author(s): Sebastian Michel, Christian Wagner, Tetyana Nosenko, Barbara Steiner, Mina Samad-Zamini, Maria Buerstmayr, Klaus Mayer, Hermann Buerstmayr
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0201181

Impact of residual covariance structures on genomic prediction ability in multi-environment trials
Cited by: 8
Author(s): Boby Mathew, Jens Léon, Mikko J. Sillanpää
Software Mentions: 2
Published: about 6 years ago

10.3389/fgene.2021.643733

Improving Genomic Prediction for Seed Quality Traits in Oat (Avena sativa L.) Using Trait-Specific Relationship Matrices
Cited by: 12
Author(s): Malachy T. Campbell, Haixiao Hu, Trevor H. Yeats, Lauren J. Brzozowski, Melanie Caffe‐Treml, Lucı́a Gutiérrez, Kevin P. Smith, Mark E. Sorrells, Michael A. Gore, Jean Luc Jannink
Software Mentions: 2
Published: over 3 years ago

10.3390/plants9020275

Seed Weight as a Covariate in Association and Prediction Studies for Biomass Traits in Maize Seedlings
Cited by: 2
Author(s): Vlatko Galić, Maja Mazur, Andrija Brkić, Josip Brkić, Antun Jambrović, Zvonimir Zdunić, Domagoj Šimić
Software Mentions: 2
Published: over 4 years ago

10.3389/fpls.2020.607770

Genotyping-by-Sequencing Identifies Historical Breeding Stages of the Recently Domesticated American Cranberry
Cited by: 11
Author(s): Luis Díaz-Garcia, Giovanny Covarrubias‐Pazaran, Jennifer Johnson‐Cicalese, Nicholi Vorsa, Juan Zalapa
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpls.2018.00081

Genome-Wide Association Analyses Identify QTL Hotspots for Yield and Component Traits in Durum Wheat Grown under Yield Potential, Drought, and Heat Stress Environments
Cited by: 146
Author(s): Sivakumar Sukumaran, M.P. Reynolds, Carolina Sansaloni
Software Mentions: 2
Published: over 6 years ago

10.1007/s00122-019-03312-5

Simultaneous selection for grain yield and protein content in genomics-assisted wheat breeding
Cited by: 60
Author(s): Sebastian Michel, Franziska Löschenberger, Christian Ametz, Bernadette Pachler, Ellen Sparry, Hermann Buerstmayr
Software Mentions: 2
Published: over 5 years ago

10.1007/s00122-021-03779-1

Early prediction of biomass in hybrid rye based on hyperspectral data surpasses genomic predictability in less-related breeding material
Cited by: 14
Author(s): Rodrigo José Galán, Angela-Maria Bernal-Vasquez, Christian Jebsen, Hans‐Peter Piepho, Patrick Thorwarth, Philipp Steffan, Andrés Gordillo, Thomas Miedaner
Software Mentions: 1
Published: over 3 years ago

10.3389/fpls.2018.01310

Multivariate GBLUP Improves Accuracy of Genomic Selection for Yield and Fruit Weight in Biparental Populations of Vaccinium macrocarpon Ait
Cited by: 35
Author(s): Giovanny Covarrubias‐Pazaran, Brandon Schlautman, Luis Diaz‐Garcia, Edward Grygleski, James J. Polashock, Jennifer Johnson‐Cicalese, Nicholi Vorsa, Massimo Iorizzo, Juan Zalapa
Software Mentions: 1
Published: about 6 years ago

10.1534/g3.120.401601

Genomic Studies Reveal Substantial Dominant Effects and Improved Genomic Predictions in an Open-Pollinated Breeding Population of <i>Eucalyptus pellita</i>
Cited by: 17
Author(s): Saravanan Thavamanikumar, R. J. Arnold, Jinhua Luo, Bala R. Thumma
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2021.692870

Genomic Prediction of Yield Traits in Single-Cross Hybrid Rice (Oryza sativa L.)
Cited by: 6
Author(s): Marlee R. Labroo, Jauhar Ali, Mohammad Aslam, Erik Jon De Asis, Madonna Angelita dela Paz, Ma. Anna Lynn Sevilla, Alexander E. Lipka, Anthony J. Studer, Jessica Rutkoski
Software Mentions: 1
Published: about 3 years ago

10.1186/s13059-021-02370-7

The genetic mechanism of heterosis utilization in maize improvement
Cited by: 60
Author(s): Yingjie Xiao, Shuqin Jiang, Qian Cheng, Xiaqing Wang, Jun Yan, Ruyang Zhang, Feng Qiao, Chuang Ma, Jingyun Luo, Wenqiang Li, Haijun Liu, Wenyu Yang, Wenhao Song, Yan Meng, Marilyn L. Warburton, Jiuran Zhao, Xiangfeng Wang, Jianbing Yan
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-020-76578-1

Shifts in the developmental rate of spadefoot toad larvae cause decreased complexity of post-metamorphic pigmentation patterns
Cited by: 0
Author(s): Lee Hyeun‐Ji, Miguel A. Rendón, H. Christoph Liedtke, Iván Gómez-Mestre
Software Mentions: 1
Published: almost 4 years ago

10.1007/s00122-021-03794-2

Genotyping crossing parents and family bulks can facilitate cost-efficient genomic prediction strategies in small-scale line breeding programs
Cited by: 1
Author(s): Sebastian Michel, Franziska Löschenberger, Christian Ametz, Hermann Buerstmayr
Software Mentions: 1
Published: over 3 years ago

10.1186/s12870-019-2180-5

Unraveling candidate genes underlying biomass digestibility in elephant grass (Cenchrus purpureus)
Cited by: 7
Author(s): João Romero do Amaral Santos de Carvalho Rocha, Tiago de Souza Marçal, Felipe Vicentino Salvador, Adriel Carlos da Silva, Pedro Crescêncio Souza Carneiro, Marcos Deon Vilela de Resende, Jailton da Costa Carneiro, Ana Luisa Sousa Azevedo, Jorge Fernando Pereira, Juarez Campolina Machado
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0220245

Genomic selection for productive traits in biparental cassava breeding populations
Cited by: 9
Author(s): Lívia Gomes Torres, Marcos Deon Vilela de Resende, Camila Ferreira Azevedo, Fabyano Fonseca e Silva, E. J. de Oliveira
Software Mentions: 1
Published: about 5 years ago

Projects: cran: sommer

Papers Mentioning sommer 39