Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: RCA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RCA
Relational Class Analysis
6 versions
Latest release: over 8 years ago
192 downloads last month
Papers Mentioning RCA 39
10.12688/f1000research.15809.2
Comparison of clustering tools in R for medium-sized 10x Genomics single-cell RNA-sequencing dataCited by: 90
Author(s): Saskia Freytag, Tian Li, Ingrid Lönnstedt, Milica Ng, Melanie Bahlo
Software Mentions: 12
Published: almost 6 years ago
10.1186/s12859-021-04028-4
scConsensus: combining supervised and unsupervised clustering for cell type identification in single-cell RNA sequencing dataCited by: 12
Author(s): Bobby Ranjan, Florian Schmidt, Wenjie Sun, Jinyu Park, Mohammad Amin Honardoost, Joanna H.J. Tan, Nirmala Arul Rayan, Shyam Prabhakar
Software Mentions: 12
Published: over 3 years ago
10.7554/eLife.48994
Self-assembling manifolds in single-cell RNA sequencing dataCited by: 48
Author(s): Alexander J. Tarashansky, Yuan Xue, Pengyang Li, Stephen R. Quake, Bo Wang
Software Mentions: 12
Published: about 5 years ago
10.1186/s13073-019-0657-3
A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseasesCited by: 67
Author(s): Danuta R. Gawel, Jordi Serra-Musach, Sandra Lilja, Jesper Aagesen, Àlex Arenas, B. Asking, Malin Bengnér, Janne Björkander, Sophie Biggs, Jan Ernerudh, Henrik Hjortswang, Jan‐Erik Karlsson, Mattias Köpsén, Eun Jung Lee, Antonio Lentini, Xinxiu Li, Mattias Magnusson, David Martínez-Enguita, Andreas Matussek, Colm E. Nestor, Samuel Schäfer, Oliver Seifert, Ceylan Sonmez, Henrik Stjernman, Andreas Tjärnberg, Simon Wu, Karin Åkesson, Alexander K Shalek, Margaretha Stenmarker, Huan Zhang, Mika Gustafsson, Mikael Benson
Software Mentions: 7
Published: over 5 years ago
10.1186/s13059-020-02147-4
CSS: cluster similarity spectrum integration of single-cell genomics dataCited by: 29
Author(s): Zhisong He, Agnieska Brazovskaja, Sebastian Ebert, J. Gray Camp, Barbara Treutlein
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pcbi.1007040
PanoView: An iterative clustering method for single-cell RNA sequencing dataCited by: 15
Author(s): Ming Hu, Dong Won Kim, Sheng Liu, Donald J. Zack, Seth Blackshaw, Jiang Qian
Software Mentions: 4
Published: about 5 years ago
10.1002/1878-0261.12680
Cell type‐specific transcriptomics of esophageal adenocarcinoma as a scalable alternative for single cell transcriptomicsCited by: 8
Author(s): Maxwell Kramer, Patrick Sven Plum, Oscar Velázquez Camacho, Kat Folz-Donahue, Martin Thelen, Isabel Garcia-Marquez, Christina B. Wölwer, Sören Büsker, Jana Wittig, Marek Franitza, Janine Altmüller, Heike Löser, Hans Schlößer, Reinhard Büttner, Wolfgang Schröder, Christiane Bruns, Hakan Alakus, Alexander Quaas, Seung‐Hun Chon, Axel M. Hillmer
Software Mentions: 3
Published: over 4 years ago
10.1186/s13059-021-02449-1
Oncogene Concatenated Enriched Amplicon Nanopore Sequencing for rapid, accurate, and affordable somatic mutation detectionCited by: 12
Author(s): Deepak Thirunavukarasu, Lauren Y. Cheng, Ping Song, Sherry X. Chen, Mitesh J. Borad, Lawrence N. Kwong, Phillip James, Daniel J. Turner, David Y. Zhang
Software Mentions: 3
Published: about 3 years ago
10.3390/mi11121034
ParRouting: An Efficient Area Partition-Based Congestion-Aware Routing Algorithm for NoCsCited by: 5
Author(s): Juan Fang, Di Zhang, Xiaqing Li
Software Mentions: 3
Published: almost 4 years ago
10.3390/s21020665
Multi-Zone Authentication and Privacy-Preserving Protocol (MAPP) Based on the Bilinear Pairing Cryptography for 5G-V2XCited by: 12
Author(s): Shimaa A. Abdel Hakeem, HyungWon Kim
Software Mentions: 3
Published: almost 4 years ago
10.7554/eLife.45261
Four erroneous beliefs thwarting more trustworthy researchCited by: 9
Author(s): Mark A Yarborough, Robert Nadon, David Karlin
Software Mentions: 2
Published: over 5 years ago
10.1007/s42113-020-00087-7
Perceptual Decision-Making in Children: Age-Related Differences and EEG CorrelatesCited by: 10
Author(s): Catherine Manning, Eric–Jan Wagenmakers, Anthony M. Norcia, Gaia Scerif, Udo Boehm
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj.4374
MIA-Clustering: a novel method for segmentation of paleontological materialCited by: 27
Author(s): Christopher J. Dunmore, Gert Wollny, Matthew M. Skinner
Software Mentions: 2
Published: over 6 years ago
10.3390/s18041271
dPCR: A Technology ReviewCited by: 347
Author(s): Phenix‐Lan Quan, Martin Sauzade, Eric Brouzés
Software Mentions: 2
Published: over 6 years ago
10.1186/s13068-017-1006-7
Correlation of structure, function and protein dynamics in GH7 cellobiohydrolases from Trichoderma atroviride, T. reesei and T. harzianumCited by: 23
Author(s): Anna S. Borisova, Elena V. Eneyskaya, Suvamay Jana, Silke Flindt Badino, Jeppe Kari, Antonella Amore, Magnus Karlsson, Henrik Hansson, Mats Sandgren, Michael E. Himmel, Peter Westh, Christina M. Payne, Anna A. Kulminskaya, Jerry Ståhlberg
Software Mentions: 2
Published: almost 7 years ago
10.1371/journal.pone.0143339
Cortical Components of Reaction-Time during Perceptual Decisions in HumansCited by: 32
Author(s): Jacek Dmochowski, Anthony M. Norcia
Software Mentions: 2
Published: almost 9 years ago
10.1038/srep37477
Repressor logic modules assembled by rolling circle amplification platform to construct a set of logic gatesCited by: 7
Author(s): Wei Hua, Bo Hu, Suming Tang, Guojie Zhao, Yifu Guan
Software Mentions: 1
Published: about 8 years ago
10.1038/s41598-017-14603-6
On Economic Complexity and the Fitness of NationsCited by: 42
Author(s): Greg Morrison, Sergey V. Buldyrev, Michele Imbruno, Omar Alonso Doria Arrieta, Armando Rungi, Massimo Riccaboni, Fabio Pammolli
Software Mentions: 1
Published: about 7 years ago
10.1038/s41598-021-83287-w
MTBP phosphorylation controls DNA replication origin firingCited by: 11
Author(s): Pedro Ferreira, Verena Höfer, Nora Kronshage, Anika Marko, Karl-Uwe Reusswig, Bilal Tetik, Christoph Dießel, Kerstin Köhler, Nikolai Tschernoster, Janine Altmüller, Nina Schulze, Boris Pfander, Dominik Boos
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-021-95627-x
Distinct neural sources underlying visual word form processing as revealed by steady state visual evoked potentials (SSVEP)Cited by: 3
Author(s): Fang Wang, Blair Kaneshiro, Chris Strauber, Lindsey Hasak, Quynh Trang H. Nguyen, Alexandra Yakovleva, Vladimir Y. Vildavski, Anthony M. Norcia, Bruce D. McCandliss
Software Mentions: 1
Published: about 3 years ago
10.3390/s19020297
Genetic Optimization of Energy- and Failure-Aware Continuous Production Scheduling in Pasta ManufacturingCited by: 8
Author(s): Shen Ke, Toon De Pessemier, Xu Gong, Luc Martens, Wout Joseph
Software Mentions: 1
Published: almost 6 years ago
10.3390/ijerph17093282
Root Cause Analysis to Identify Medication and Non-Medication Strategies to Prevent Infection-Related Hospitalizations from Australian Residential Aged Care ServicesCited by: 9
Author(s): Janet K. Sluggett, Samanta Lalic, Sarah Hosking, Brett Ritchie, Jennifer McLoughlin, Terry Shortt, Leonie Robson, Tina Cooper, Kelly A. Cairns, Jenni Ilomäki, Renuka Visvanathan, John Bell
Software Mentions: 1
Published: over 4 years ago
10.1155/2021/6678958
Overview of Artificial Intelligence Applications in Chinese Medicine TherapyCited by: 8
Author(s): Chuwen Feng, Shuoyan Zhou, Yuanyuan Qu, Qingyong Wang, Shaowen Bao, Li Yang, Tiansong Yang
Software Mentions: 1
Published: over 3 years ago
10.1186/1471-2105-8-284
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approachCited by: 35
Author(s): Carson M. Andorf, Drena Dobbs, Vasant Honavar
Software Mentions: 1
Published: over 17 years ago
10.1186/1471-2164-11-419
Causal reasoning identifies mechanisms of sensitivity for a novel AKT kinase inhibitor, GSK690693Cited by: 29
Author(s): Rakesh Kumar, Stephen J. Blakemore, Catherine Ellis, Emanuel F. Petricoin, Dexter Pratt, Michael Macoritto, Andrea Matthews, Joseph Loureiro, Keith O. Elliston
Software Mentions: 1
Published: over 14 years ago
10.1186/s12884-020-03394-w
Prenatal screening for trisomy 21: a comparative performance and cost analysis of different screening strategiesCited by: 13
Author(s): Tianhua Huang, Clare Gibbons, Shamim Rashid, Megan Priston, H. Melanie Bedford, Ellen Mak-Tam, Wendy S. Meschino
Software Mentions: 1
Published: almost 4 years ago
10.1186/1752-0509-6-134
Computational codon optimization of synthetic gene for protein expressionCited by: 71
Author(s): Bevan Kai-Sheng Chung, Dong-Yup Lee
Software Mentions: 1
Published: almost 13 years ago
10.3390/plants10050896
Prototyping a Knowledge-Based System to Identify Botanical Extracts for Plant Health in Sub-Saharan AfricaCited by: 5
Author(s): Pierre Silvie, Pierre Martin, Marianne Huchard, Priscilla Keip, Alain Gutierrez, Samira Sarter
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0052080
Non-Random mtDNA Segregation Patterns Indicate a Metastable Heteroplasmic Segregation Unit in m.3243A>G Cybrid CellsCited by: 22
Author(s): Anton K. Raap, Roshan S. Jahangir Tafrechi, Frans M. van de Rijke, Angela Pyle, Carolina Wählby, Károly Szuhai, R.B.G. Ravelli, I.F.M. de Coo, Harsha Rajasimha, Mats Nilsson, Patrick F. Chinnery, David C. Samuels, George M.C. Janssen
Software Mentions: 1
Published: almost 12 years ago
10.1371/journal.pone.0076177
scnRCA: A Novel Method to Detect Consistent Patterns of Translational Selection in Mutationally-Biased GenomesCited by: 13
Author(s): Patrick K. O’Neill, Mindy Or, Ivan Erill
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0247477
Mathematical modelling of post-filter ionized calcium during citrate anticoagulated continuous renal replacement therapyCited by: 2
Author(s): Innas Forsal, Anders Nilsson, Mikael Bodelsson, Anders Wieslander, Marcus Broman
Software Mentions: 1
Published: over 3 years ago
10.1016/j.dcn.2019.100670
Neural dynamics underlying coherent motion perception in children and adultsCited by: 9
Author(s): Catherine Manning, Blair Kaneshiro, Peter J. Kohler, Mihaela Duta, Gaia Scerif, Anthony M. Norcia
Software Mentions: 1
Published: over 5 years ago
10.3390/e20100803
The Middle-Income Trap and the Coping Strategies From Network-Based PerspectivesCited by: 3
Author(s): Mingyang Zhou, Wen-Man Xiong, Xiaoyu Li, Hao Liao
Software Mentions: 1
Published: about 6 years ago
10.7508/aojnmb.2013.01.002
History and Perspectives of AOFNMB.Cited by: 2
Author(s): Henry Hee-Seung Bom
Software Mentions: 1
Published: almost 12 years ago
10.3389/fmolb.2018.00088
The Inclusion of Water Molecules in Residue Interaction Networks Identifies Additional Central ResiduesCited by: 9
Author(s): Guillaume Brysbaert, Ralf Blossey, Marc F. Lensink
Software Mentions: 1
Published: about 6 years ago
10.3389/fpubh.2016.00251
Improving Fidelity of Translation of the Stepping On Falls Prevention Program through Root Cause AnalysisCited by: 13
Author(s): Jane Mahoney, Vicki L. Gobel, Terry Shea, Jodi Janczewski, Sandra Cech, Lindy Clemson
Software Mentions: 1
Published: about 8 years ago
10.1186/s12968-019-0523-x
Automated quality control in image segmentation: application to the UK Biobank cardiovascular magnetic resonance imaging studyCited by: 71
Author(s): R. H. Robinson, Vanya V. Valindria, Wenjia Bai, Ozan Oktay, Bernhard Kainz, Hideaki Suzuki, Mihir M. Sanghvi, Nay Aung, José Miguel Paiva, Filip Zemrak, Kenneth Fung, Elena Lukaschuk, Aaron M. Lee, Valentina Carapella, Young Jin Kim, Stefan K. Piechnik, Stefan Neubauer, Steffen E. Petersen, Chris Page, Paul M. Matthews, Daniel Rueckert, Ben Glocker
Software Mentions: 1
Published: over 5 years ago
10.3390/jcm9041206
Integrative Analysis and Machine Learning Based Characterization of Single Circulating Tumor CellsCited by: 29
Author(s): Arvind Iyer, Kavya Gupta, Shreya Sharma, Kishore Hari, Yi Fang Lee, Neevan Ramalingam, Yoon Sim Yap, Jay West, Ali Asgar S. Bhagat, Balaram Vishnu Subramani, Burhanuddin Sabuwala, Tuan Zea Tan, Jean Paul Thiery, Mohit Kumar Jolly, Naveen Ramalingam, Debarka Sengupta
Software Mentions: 1
Published: over 4 years ago