Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.48994

https://doi.org/10.7554/eLife.48994

Cited by: 48
Author(s): Alexander J. Tarashansky, Yuan Xue, Pengyang Li, Stephen R. Quake, Bo Wang
Published: over 4 years ago

Software Mentions 12

bioconductor: graph

graph: A package to handle graph data structures
Papers that mentioned: 45

bioconductor: SC3

Single-Cell Consensus Clustering
Papers that mentioned: 71

bioconductor: SIMLR

Single-cell Interpretation via Multi-kernel LeaRning (SIMLR)
Papers that mentioned: 40

cran: ccRemover

Removes the Cell-Cycle Effect from Single-Cell RNA-Sequencing Data
Papers that mentioned: 5

cran: RCA

Relational Class Analysis
Papers that mentioned: 39

cran: SAM

Sparse Additive Modelling
Papers that mentioned: 4,566

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: STAR

Spike Train Analysis with R
Papers that mentioned: 5,759

pypi: graph

Directed and undirected graph data structures and algorithms.
Papers that mentioned: 45

pypi: Manifold

An SMF service manifest creation tool.
Papers that mentioned: 20

pypi: SIMLR

Visualization and analysis of single-cell RNA-seq data by kernel-based similarity learning
Papers that mentioned: 40

pypi: tslearn

A machine learning toolkit dedicated to time-series data
Papers that mentioned: 5