cran: sm | Projects | Ecosyste.ms: Papers

10.1111/tran.12131

Regional surnames and genetic structure in Great Britain
Cited by: 14
Author(s): Jens Kandt, James Cheshire, Paul Longley
Software Mentions: 15
Published: over 8 years ago

10.1186/s12859-021-03970-7

stochprofML: stochastic profiling using maximum likelihood estimation in R
Cited by: 3
Author(s): Lisa Amrhein, Christiane Fuchs
Software Mentions: 14
Published: over 3 years ago

Overlooked habitat of a vulnerable gorgonian revealed in the Mediterranean and Eastern Atlantic by ecological niche modelling
Cited by: 28
Author(s): Joana Boavida, Jorge Assis, Inga Silva, Ester A. Serrão
Software Mentions: 13
Published: about 8 years ago

10.3389/fvets.2019.00406

An Epidemiological and Economic Simulation Model to Evaluate Strategies for the Control of Bovine Virus Diarrhea in Germany
Cited by: 17
Author(s): Jörn Gethmann, Carolina Probst, Jason Bassett, Pascal Blunk, Philipp Hövel, Franz Josef Conraths
Software Mentions: 13
Published: about 5 years ago

10.1186/s13071-018-3066-3

Modelling the spatial distribution of aquatic insects (Order Hemiptera) potentially involved in the transmission of Mycobacterium ulcerans in Africa
Cited by: 9
Author(s): Jorge Cano, Antonio Rodrı́guez Rodrı́guez, Hamish Simpson, Earnest Njih Tabah, José Luís Graña Gómez, Rachel L. Pullan
Software Mentions: 10
Published: about 6 years ago

10.3390/ijms22031190

Genome-Wide DNA Methylation Analysis of a Cohort of 41 Patients Affected by Oculo-Auriculo-Vertebral Spectrum (OAVS)
Cited by: 12
Author(s): Valentina Guida, Luciano Calzari, Maria Teresa Fadda, Francesca Piceci‐Sparascio, María Cristina Digilio, Laura Bernardini, Francesco Brancati, Teresa Mattina, Daniela Melis, Francesca Forzano, Silvana Briuglia, Tommaso Mazza, Sebastiano Bianca, Enza Maria Valente, Leila Bagherjad Salehi, Paolo Prontera, Mario Pagnoni, Romano Tenconi, Bruno Dallapiccola, Giorgio Iannetti, Luigi Corsaro, Alessandro De Luca, Davide Gentilini
Software Mentions: 10
Published: almost 4 years ago

10.1186/s13007-021-00795-6

Open source 3D phenotyping of chickpea plant architecture across plant development
Cited by: 6
Author(s): William T. Salter, Arjina Shrestha, Margaret M. Barbour
Software Mentions: 9
Published: about 3 years ago

10.7717/peerj.8807

Evaluation of δ15N analysis to trace the origin of Diaphorina citri (Hemiptera: Liviidae) to citrus orchard fertilization management
Cited by: 1
Author(s): Francesc Gómez-Marco, Andrew Yoshimoto, W. Evan Braswell, Richard Stouthamer
Software Mentions: 8
Published: over 4 years ago

10.1186/s12870-016-0754-z

Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0116508

Large Scale Aggregate Microarray Analysis Reveals Three Distinct Molecular Subclasses of Human Preeclampsia
Cited by: 90
Author(s): Katherine Leavey, Shannon Bainbridge, Brian Cox
Software Mentions: 7
Published: almost 10 years ago

10.1371/journal.pone.0080563

Cryptic Speciation Patterns in Iranian Rock Lizards Uncovered by Integrative Taxonomy
Cited by: 75
Author(s): Faraham Ahmadzadeh, Morris Flecks, Miguel Á. Carretero, Omid Mozaffari, Wolfgang Böhme, D. James Harris, Susana Freitas, Dennis Rödder
Software Mentions: 6
Published: almost 11 years ago

10.1002/ece3.3010

Global realized niche divergence in the African clawed frog <i>Xenopus laevis</i>
Cited by: 23
Author(s): Dennis Rödder, Flora Ihlow, Julien Courant, Jean Secondi, Anthony Herrel, Rui Rebelo, John Measey, Francesco Lillo, F. André de Villiers, Charlotte De Busschere, Thierry Backeljau
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.5129

Assessing population changes of historically overexploited black corals (Order: Antipatharia) in Cozumel, Mexico
Cited by: 10
Author(s): Erika Gress, Dominic A. Andradi‐Brown
Software Mentions: 5
Published: over 6 years ago

10.1093/molbev/msx270

Faster Evolving Primate Genes Are More Likely to Duplicate
Cited by: 35
Author(s): Áine O’Toole, Laurence D. Hurst, Aoife McLysaght
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0172583

Solving global shallow water equations on heterogeneous supercomputers
Cited by: 2
Author(s): Haohuan Fu, Lin Gan, Chao Yang, Wei Xue, Lanning Wang, Xinliang Wang, Xiaomeng Huang, Guangwen Yang
Software Mentions: 5
Published: over 7 years ago

10.18632/oncotarget.22750

Development of a predictive miRNA signature for breast cancer risk among high-risk women
Cited by: 28
Author(s): Nicholas H. Farina, Jon E. Ramsey, Melissa Cuke, Thomas P. Ahern, David J. Shirley, Janet L. Stein, Gary S. Stein, Jane B. Lian, Marie Wood
Software Mentions: 5
Published: almost 7 years ago

10.1186/s12983-017-0208-y

Evidence for a postreproductive phase in female false killer whales Pseudorca crassidens
Cited by: 22
Author(s): Theoni Photopoulou, Ines Maria Ferreira, Peter B. Best, Toshio Kasuya, Helene Marsh
Software Mentions: 4
Published: over 7 years ago

10.1186/gb-2014-15-1-r4

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein
Cited by: 93
Author(s): Li-Nan Chen, Jason G Dumelie, Xiao Li, Matthew Hong Kei Cheng, Zhiyong Yang, John Laver, Najeeb U. Siddiqui, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz, Craig Smibert
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0073567

A Generalized Model to Estimate the Statistical Power in Mitochondrial Disease Studies Involving 2×k Tables
Cited by: 13
Author(s): Jacobo Pardo‐Seco, Jorge Amigo, Wenceslao González‐Manteiga, Antonio Salas
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-021-85259-6

Detection of horizontal gene transfer in the genome of the choanoflagellate Salpingoeca rosetta
Cited by: 10
Author(s): Danielle M. Matriano, Rosanna A. Alegado, Cecilia Conaco
Software Mentions: 3
Published: over 3 years ago

10.3390/biomedicines8120606

Development of a Biomarker Panel to Distinguish Risk of Progressive Chronic Kidney Disease
Cited by: 8
Author(s): Evan P. Owens, Ken‐Soon Tan, Robert J. Ellis, S. Del Vecchio, Tyrone L.R. Humphries, Erica Lennan, David A. Vesey, Helen Healy, Wendy E. Hoy, Glenda C. Gobé
Software Mentions: 3
Published: almost 4 years ago

10.12669/pjms.35.6.618

Predictive value of C-Reactive Protein/Albumin ratio in patients with chronic complicated diabetes mellitus
Cited by: 8
Author(s): Muharrem Bayrak
Software Mentions: 3
Published: about 5 years ago

10.1002/ece3.7444

A method to evaluate body length of live aquatic vertebrates using digital images
Cited by: 0
Author(s): Iván Arisméndi, Gwen W. Bury, Lauren Zatkos, Jeff Snyder, David Lindley
Software Mentions: 3
Published: over 3 years ago

10.3389/fphys.2018.00401

Autonomic Differentiation Map: A Novel Statistical Tool for Interpretation of Heart Rate Variability
Cited by: 23
Author(s): Daniela Lucini, Nadia Solaro, Massimo Pagani
Software Mentions: 3
Published: over 6 years ago

10.1111/gcb.15116

Refuges and ecological traps: Extreme drought threatens persistence of an endangered fish in intermittent streams
Cited by: 40
Author(s): Ross Vander Vorste, Mariska Obedzinski, Sarah Nossaman Pierce, Stephanie M. Carlson, Theodore E. Grantham
Software Mentions: 3
Published: over 4 years ago

10.1038/s41396-019-0577-7

The effect of phage genetic diversity on bacterial resistance evolution
Cited by: 44
Author(s): Jenny M. Broniewski, Sean Meaden, Steve Paterson, Angus Buckling, Edze R. Westra
Software Mentions: 3
Published: almost 5 years ago

10.7554/eLife.15161

Different promoter affinities account for specificity in MYC-dependent gene regulation
Cited by: 118
Author(s): Francesca Lorenzin, Uwe Benary, Apoorva Baluapuri, Susanne Walz, Lisa Anna Jung, Björn von Eyß, Caroline Kisker, Jana Wolf, Martin Eilers, Elmar Wolf
Software Mentions: 3
Published: over 8 years ago

10.1186/s12870-019-2000-y

Single-plant GWAS coupled with bulk segregant analysis allows rapid identification and corroboration of plant-height candidate SNPs
Cited by: 18
Author(s): Abiskar Gyawali, Vivek Shrestha, Katherine E. Guill, Sherry Flint-García, Timothy Beissinger
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0072855

Evaluating the Significance of Paleophylogeographic Species Distribution Models in Reconstructing Quaternary Range-Shifts of Nearctic Chelonians
Cited by: 54
Author(s): Dennis Rödder, A. Michelle Lawing, Morris Flecks, Faraham Ahmadzadeh, Johannes Dambach, Jan O. Engler, Jan Christian Habel, Timo Hartmann, David Hörnes, Flora Ihlow, Kathrin Schidelko, Darius Stiels, P. David Polly
Software Mentions: 2
Published: about 11 years ago

10.1371/journal.pone.0046283

Effects of Late-Cenozoic Glaciation on Habitat Availability in Antarctic Benthic Shrimps (Crustacea: Decapoda: Caridea)
Cited by: 20
Author(s): Johannes Dambach, Sven Thatje, Dennis Rödder, Zeenatul Basher, Michael J. Raupach
Software Mentions: 2
Published: about 12 years ago

10.7717/peerj.4789

Variations in early life history traits of Japanese anchovy <i>Engraulis japonicus</i> in the Yangtze River Estuary
Cited by: 4
Author(s): Chunlong Liu, Weiwei Xian, Shude Liu, Yifeng Chen
Software Mentions: 2
Published: over 6 years ago

10.1186/1471-2164-15-16

Generation of SNP datasets for orangutan population genomics using improved reduced-representation sequencing and direct comparisons of SNP calling algorithms
Cited by: 79
Author(s): Maja P. Greminger, Kai N. Stölting, Alexander Nater, Benoît Goossens, Natasha Arora, Rémy Bruggmann, Andrea Patrignani, Beatrice Nussberger, Reeta Sharma, Robert H. S. Kraus, Laurentius Ambu, Ian Singleton, Lounès Chikhi, Carel P. van Schaik, Michael Krützen
Software Mentions: 2
Published: almost 11 years ago

10.3390/insects6040792

Diffusion Rates and Dispersal Patterns of Unfed versus Recently Fed Bed Bugs (Cimex lectularius L.)
Cited by: 2
Author(s): Jerome Goddard, Michael A. Caprio
Software Mentions: 2
Published: about 9 years ago

10.1038/srep19409

Bacterial flagellar motility on hydrated rough surfaces controlled by aqueous film thickness and connectedness
Cited by: 44
Author(s): Robin Tecon, Dani Or
Software Mentions: 2
Published: almost 9 years ago

10.1186/2040-2392-5-31

Rare deleterious mutations of the gene EFR3A in autism spectrum disorders
Cited by: 25
Author(s): Abha R. Gupta, Michelle Pirruccello, Feng Cheng, Hyo Jung Kang, Thomas V. Fernandez, Jeremy M. Baskin, Murim Choi, Li Liu, A. Gülhan Ercan-Şençiçek, John D. Murdoch, Lambertus Klei, Benjamin M. Neale, Daniel Franjic, Mark J. Daly, Richard P. Lifton, Pietro De Camilli, Hongyu Zhao, Nenad Šestan, Matthew W. State
Software Mentions: 2
Published: almost 11 years ago

10.1038/s41598-017-16754-y

Immune and Imaging Correlates of Mild Cognitive Impairment Conversion to Alzheimer’s Disease
Cited by: 23
Author(s): Francesca La Rosa, Marina Saresella, Francesca Baglio, Federica Piancone, Ivana Marventano, Emma Calabrese, Raffaello Nemni, Enrico Ripamonti, Monia Cabinio, Mario Clerici
Software Mentions: 2
Published: almost 7 years ago

10.1098/rsbl.2013.0856

Relationship between evenness and body size in species rich assemblages
Cited by: 3
Author(s): Anne E. Magurran, Helder Lima de Queiroz, Alexandre Pucci Hercos
Software Mentions: 2
Published: almost 11 years ago

10.1128/CVI.00564-15

Lymphocyte Perturbations in Malawian Children with Severe and Uncomplicated Malaria
Cited by: 19
Author(s): Wilson L. Mandala, Chisomo Msefula, Esther N. Gondwe, James J. Gilchrist, Stephen M. Graham, Paul Pensulo, Grace Mwimaniwa, Meraby Banda, Terrie E. Taylor, Elizabeth Molyneux, Mark T. Drayson, Stephen A. Ward, Malcolm E. Molyneux, Calman A. MacLennan
Software Mentions: 2
Published: almost 9 years ago

10.17179/excli2019-1876

The effects of synbiotic supplementation on serum inflammatory markers and edema volume in breast cancer survivors with lymphedema.
Cited by: 7
Author(s): Saeideh Vafa, Setareh Haghighat, Leila Janani, Ali Saneei Totmaj, Mehraban Navaei, Ali Amirinejad, Hadi Emamat, Zahra Salehi, Mitra Zarrati
Software Mentions: 2
Published: almost 5 years ago

10.1007/s00392-020-01704-y

Effects of surgical and FFP2/N95 face masks on cardiopulmonary exercise capacity
Cited by: 225
Author(s): Sven Fikenzer, Tobias Uhe, Daniel Lavall, U. Rudolph, Roberto Falz, Martin Busse, Pierre Hepp, Ulrich Laufs
Software Mentions: 2
Published: over 4 years ago

10.1186/s12917-015-0617-0

Spatial analysis and temporal trends of porcine reproductive and respiratory syndrome in Denmark from 2007 to 2010 based on laboratory submission data
Cited by: 9
Author(s): Ana Carolina Lopes Antunes, Tariq Hisham Beshara Halasa, Klara Tølbøl Lauritsen, Charlotte Sonne Kristensen, Lars Erik Larsen, Nils Toft
Software Mentions: 2
Published: almost 9 years ago

10.3389/fendo.2017.00289

Monitoring of Dual CRISPR/Cas9-Mediated Steroidogenic Acute Regulatory Protein Gene Deletion and Cholesterol Accumulation Using High-Resolution Fluorescence In Situ Hybridization in a Single Cell
Cited by: 5
Author(s): Jun Young Lee, Colin R. Jefcoate
Software Mentions: 2
Published: about 7 years ago

Projects: cran: sm

Papers Mentioning sm 42