Ecosyste.ms: Papers

10.1186/s13073-021-00902-1

Integrative statistical analyses of multiple liquid biopsy analytes in metastatic breast cancer
Cited by: 16
Author(s): Corinna Keup, Vinay Suryaprakash, Siegfried Hauch, Markus Storbeck, Peter F. Hahn, Markus Sprenger-Haussels, Hans‐Christian Kolberg, Mitra Tewes, Oliver Hoffmann, Rainer Kimmig, Sabine Kasimir‐Bauer
Software Mentions: 9
Published: over 3 years ago

10.3389/fonc.2019.01310

Development and Validation of an IDH1-Associated Immune Prognostic Signature for Diffuse Lower-Grade Glioma
Cited by: 31
Author(s): Xiaoyun Deng, Dongdong Lin, Bo Chen, Xiaojia Zhang, Xingxing Xu, Zhisheng Yang, Xuchao Shen, Liang Yang, Xiaoyong Lu, Song Huang, Bo Yin, Nu Zhang, Jian Lin
Software Mentions: 8
Published: almost 5 years ago

10.3389/fpls.2020.00820

Biological Nitrification Inhibition (BNI): Phenotyping of a Core Germplasm Collection of the Tropical Forage Grass Megathyrsus maximus Under Greenhouse Conditions
Cited by: 28
Author(s): Daniel Villegas, Ashly Arévalo, Jonathan Nùñez, Johanna Mazabel, G. V. Subbarao, Idupulapati M. Rao, Jose J De Vega, Jacobo Arango
Software Mentions: 8
Published: over 4 years ago

10.3389/fimmu.2021.694680

Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients
Cited by: 5
Author(s): Teresa Domaszewska, Joanna Żyła, Raik Otto, Stefan H. E. Kaufmann, January Weiner
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2017.00413

Identification of Circular RNAs in Kiwifruit and Their Species-Specific Response to Bacterial Canker Pathogen Invasion
Cited by: 54
Author(s): Zupeng Wang, Yifei Liu, Dawei Li, Li Li, Qiong Zhang, Shuaibin Wang, Hongwen Huang
Software Mentions: 7
Published: over 7 years ago

10.1016/j.celrep.2019.12.019

Neuroinflammation-Associated Aspecific Manipulation of Mouse Predator Fear by Toxoplasma gondii
Cited by: 81
Author(s): Madlaina Boillat, Pierre‐Mehdi Hammoudi, Sunil Kumar Dogga, Stéphane Pagès, Maged Goubran, Iván Rodríguez, Dominique Soldati‐Favre
Software Mentions: 6
Published: almost 5 years ago

10.1002/cam4.4115

Development and validation of a <i>PBRM1</i>‐associated immune prognostic model for clear cell renal cell carcinoma
Cited by: 5
Author(s): Jiayi Chen, Chunlin Yao, Nan Qiao, Yangyang Ge, Jianhua Li, Yun Lin, Shanglong Yao
Software Mentions: 6
Published: about 3 years ago

10.3390/ijerph16040524

Age-Related Differences in miRNA Expression in Mexican-American Newborns and Children
Cited by: 6
Author(s): Karen Huen, Daneida Lizárraga, Katherine Kogut, Brenda Eskenazi, Nina Holland
Software Mentions: 5
Published: over 5 years ago

10.1016/j.jcmgh.2021.06.004

Impaired Luminal Control of Intestinal Macrophage Maturation in Patients With Ulcerative Colitis During Remission
Cited by: 7
Author(s): Lujain Maasfeh, Anetta Härtlová, Stefan Isaksson, Johanna Sundin, Georgios Mavroudis, Otto Savolainen, Hans Strid, Lena Öhman, Maria K. Magnusson
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2018.01282

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities
Cited by: 37
Author(s): Brandon Kieft, Li Zhou, Samuel Bryson, Byron C. Crump, Robert L. Hettich, Chongle Pan, Xavier Mayali, Robert F. Mueller
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.02077

Revisiting the Taxonomy of the Genus Arcobacter: Getting Order From the Chaos
Cited by: 237
Author(s): Alba Pérez-Cataluña, Nuria Salas-Massó, Ana L. Diéguez, Sabela Balboa, Alberto Lema, Jesús L. Romalde, María José Figueras
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.736423

Comprehensive Analysis of Splicing Factor and Alternative Splicing Event to Construct Subtype-Specific Prognosis-Predicting Models for Breast Cancer
Cited by: 4
Author(s): He Zhang, Baoai Han, Xingxing Han, Yuying Zhu, Hui Liu, Zhiyong Wang, Yanfen Cui, Ran Tian, Zicong Gao, Ruinan Tian, Sixin Ren, Xiaoyan Zuo, Jianfei Tian, Fei Zhang, Ruifang Niu
Software Mentions: 4
Published: about 3 years ago

10.3390/ijms19041111

Transcriptome Profile in Unilateral Adrenalectomy-Induced Compensatory Adrenal Growth in the Rat
Cited by: 11
Author(s): Karol Jopek, Marianna Tyczewska, Piotr Celichowski, Ludwik K. Malendowicz, Marcin Ruciński
Software Mentions: 4
Published: over 6 years ago

10.1002/1878-0261.12438

Molecular evidence of field cancerization initiated by diabetes in colon cancer patients
Cited by: 10
Author(s): Laura del Puerto‐Nevado, Pablo Mínguez, Marta Cortón, Sonia Solanes-Casado, I. Prieto, Sebastián Mas, Ana B. Sanz, Paula Gónzález-Alonso, Cristina Villaverde, Sergio Portal‐Núñez, Óscar Aguilera, Carmen Gómez-Guerrero, Pedro Esbrit, Fernando Vivanco, Nieves González, Carmen Ayuso, Alberto Ortíz, Federico Rojo, Jesús Egido, Gloria Alvarez-Llamas, Jesús Garcı́a-Foncillas
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-020-02744-2

Application of genome-wide insertion/deletion markers on genetic structure analysis and identity signature of Malus accessions
Cited by: 6
Author(s): Xuan Wang, Fei Shen, Yuan Gao, Kun Wang, Ruiting Chen, Jun Luo, Lili Yang, Xi Zhang, Changwei Qiu, Wei Li, Ting Wu, Xuefeng Xu, Yi Wang, Cong Peng, Zhenhai Han, Xinzhong Zhang
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0240948

Predictions from algorithmic modeling result in better decisions than from data modeling for soybean iron deficiency chlorosis
Cited by: 2
Author(s): Zhanyou Xu, Andreomar Kurek, Steven B. Cannon, William D. Beavis
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13061421

Efficacy of Targeted Radionuclide Therapy Using [131I]ICF01012 in 3D Pigmented BRAF- and NRAS-Mutant Melanoma Models and In Vivo NRAS-Mutant Melanoma
Cited by: 5
Author(s): Hussein Akil, Mercédès Quintana, J. Raymond, Tommy Billoux, Valentin Benboubker, Sophie Besse, Philippe Auzeloux, Véronique Delmas, Valérie Petit, Lionel Larue, M. D’Incan, Françoise Degoul, Jacques Rouanet
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers12020381

NASA GeneLab Platform Utilized for Biological Response to Space Radiation in Animal Models
Cited by: 16
Author(s): J. Tyson McDonald, R. Stainforth, Jack Miller, Thomas J. Cahill, Willian A. da Silveira, Komal S. Rathi, Gary Hardiman, Deanne Taylor, Sylvain V. Costes, Vinita Chauhan, Robert Meller, Afshin Beheshti
Software Mentions: 4
Published: over 4 years ago

10.1038/s42003-021-02189-9

Claudin-2 promotes colorectal cancer liver metastasis and is a biomarker of the replacement type growth pattern
Cited by: 24
Author(s): Sébastien Tabariès, Matthew G. Annis, Anthoula Lazaris, Stephanie Petrillo, Jennifer Huxham, A. Achour, Vincent Palmieri, Jaclyn M. Chabot, Radia Marie Johnson, Steven Van Laere, Cornelis Verhoef, Yasmina Hachem, Sara Yumeen, Nicholas Meti, Atilla Ömeroğlu, Gulbeyaz Altinel, Zu‐Hua Gao, Alan Yu, Dirk J. Grünhagen, Peter B. Vermeulen, Peter Metrakos, Peter M. Siegel
Software Mentions: 4
Published: over 3 years ago

10.3389/fpls.2020.620832

Microcutting Redox Profile and Anatomy in Eucalyptus spp. With Distinct Adventitious Rooting Competence
Cited by: 9
Author(s): Johnatan Vilasboa, Cibele Tesser da Costa, Leonardo Girardi Ransan, Jorge Ernesto de Araújo Mariath, Arthur Germano Fett-Neto
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.ppat.1008010

The Klebsiella pneumoniae citrate synthase gene, gltA, influences site specific fitness during infection
Cited by: 25
Author(s): Jay Vornhagen, Yuang Sun, Paul A. Breen, Valerie Forsyth, Lili Zhao, Harry L. T. Mobley, Michael A. Bachman
Software Mentions: 3
Published: about 5 years ago

10.1186/s12893-021-01298-w

Identification of potential hub genes associated with skin wound healing based on time course bioinformatic analyses
Cited by: 2
Author(s): Hongtu Zhu, Meng Fan, Gao Wei
Software Mentions: 3
Published: over 3 years ago

10.3897/zookeys.560.6264

Taxonomic revision of the tarantula genus Aphonopelma Pocock, 1901 (Araneae, Mygalomorphae, Theraphosidae) within the United States
Cited by: 53
Author(s): Chris A. Hamilton, Brent E. Hendrixson, Jason E. Bond
Software Mentions: 3
Published: almost 9 years ago

10.1534/g3.119.400758

Prevalence and Implications of Contamination in Public Genomic Resources: A Case Study of 43 Reference Arthropod Assemblies
Cited by: 20
Author(s): Clémentine François, Faustine Durand, Emeric Figuet, Nicolas Galtier
Software Mentions: 3
Published: almost 5 years ago

10.1186/s12876-020-01281-4

Fecal microbiota composition is linked to the postoperative disease course in patients with Crohn’s disease
Cited by: 11
Author(s): Anna Strömbeck, Anders Lasson, Hans Strid, Johanna Sundin, Per-Ove Stotzer, Magnus Simrén, Maria K. Magnusson, Lena Öhman
Software Mentions: 3
Published: over 4 years ago

10.1038/s41598-018-26766-x

Are Systemic Manifestations Ascribable to COPD in Smokers? A Structural Equation Modeling Approach
Cited by: 4
Author(s): Laurent Boyer, Sylvie Bastuji‐Garin, C. Chouaïd, B. Housset, Philippe Le Corvoisier, Geneviève Dérumeaux, Jorge Boczkowski, Bernard Maître, Serge Adnot, Étienne Audureau
Software Mentions: 3
Published: over 6 years ago

10.1038/s41598-019-38877-0

Integrative analysis of postharvest chilling injury in cherry tomato fruit reveals contrapuntal spatio-temporal responses to ripening and cold stress
Cited by: 33
Author(s): Karin Albornoz, Marita Cantwell, Lu Zhang, Diane M. Beckles
Software Mentions: 3
Published: over 5 years ago

10.3390/ijms21031159

Surgical Wound Fluids from Patients with Breast Cancer Reveal Similarities in the Biological Response Induced by Intraoperative Radiation Therapy and the Radiation-Induced Bystander Effect—Transcriptomic Approach
Cited by: 10
Author(s): Katarzyna Kulcenty, Igor Piotrowski, Marcin Ruciński, Joanna Wróblewska, Karol Jopek, Dawid Murawa, Wiktoria Maria Suchorska
Software Mentions: 3
Published: over 4 years ago

10.1038/s41419-020-02984-y

CPEB3-mediated MTDH mRNA translational suppression restrains hepatocellular carcinoma progression
Cited by: 21
Author(s): He Zhang, Chendan Zou, Zini Qiu, Erhu Fang, Qiang Li, Miao Chen, Dayong Wang, Qinrui Tan, Wanli Yin, Cedric Matunda, Hefei Wang, Yongjian Zhang, Cheng Zhan, Chuxuan Wang, Yue Wu, Xiuchen Xuan, Yayan Wang, Chaoxia Zou, Guixiang Lv, Xu Gao
Software Mentions: 2
Published: about 4 years ago

10.1097/MD.0000000000026219

Construction of autophagy prognostic signature and analysis of prospective molecular mechanisms in skin cutaneous melanoma patients
Cited by: 3
Author(s): Shijie Liao, Jun He, Chong Liu, Zide Zhang, Hongyu Liao, Zuo-Wei Liao, Chaojie Yu, Jian Guan, Hao Yuan Mo, Zhenchao Yuan, Tuo Liang, Zhaojun Lu, Guoyong Xu, Zequn Wang, Jiarui Chen, Jie Jiang, Xinli Zhan
Software Mentions: 2
Published: over 3 years ago

10.1038/s41598-021-87973-7

Fecal microbiota dynamics during disease activity and remission in newly diagnosed and established ulcerative colitis
Cited by: 6
Author(s): Lena Öhman, Anders Lasson, Anna Strömbeck, Stefan Isaksson, Marcus Hesselmar, Magnus Simrén, Hans Strid, Maria K. Magnusson
Software Mentions: 2
Published: over 3 years ago

10.1111/eva.12913

Springtail phylogeography highlights biosecurity risks of repeated invasions and intraregional transfers among remote islands
Cited by: 15
Author(s): Helena P. Baird, Katherine L. Moon, Charlene Janion‐Scheepers, Steven L. Chown
Software Mentions: 2
Published: over 4 years ago

10.1128/mBio.01977-16

Bacteria Getting into Shape: Genetic Determinants of <i>E. coli</i> Morphology
Cited by: 24
Author(s): Shawn French, Jean-Philippe Côté, Jonathan Stokes, Ray Truant, Eric D. Brown
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-65055-4

Cancer genomics predicts disease relapse and therapeutic response to neoadjuvant chemotherapy of hormone sensitive breast cancers
Cited by: 4
Author(s): Jianguang Zhu, Levan Muskhelishvili, Weida Tong, Jürgen Borlak, Minjun Chen
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.4139

Genetic structure in Red Junglefowl ( Gallus gallus ) populations: Strong spatial patterns in the wild ancestors of domestic chickens in a core distribution range
Cited by: 3
Author(s): Hoa Nguyen-Phuc, Mark E. Berres
Software Mentions: 1
Published: over 6 years ago

10.1038/s41598-021-96356-x

Authenticity control of pine sylvestris essential oil by chiral gas chromatographic analysis of α-pinene
Cited by: 9
Author(s): Martina Allenspach, Claudia Valder, Daniela Flamm, Christian Steuer
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2019.00909

Proteomic and Metabolomic Profiling of Deinococcus radiodurans Recovering After Exposure to Simulated Low Earth Orbit Vacuum Conditions
Cited by: 22
Author(s): Emanuel Ott, Yuko Kawaguchi, Natalie Özgen, Akihiko Yamagishi, Elke Rabbow, Petra Rettberg, Wolfram Weckwerth, Tetyana Milojevic
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0163662

The CARD9 Polymorphisms rs4077515, rs10870077 and rs10781499 Are Uncoupled from Susceptibility to and Severity of Pulmonary Tuberculosis
Cited by: 8
Author(s): Ioana Streaţă, January Weiner, Marco Iannaconne, Gayle McEwen, Marius Sorin Ciontea, Marian Olaru, Rosanna Capparelli, Mihai Ioana, Stefan H. E. Kaufmann, Anca Dorhoi
Software Mentions: 1
Published: about 8 years ago

10.1155/2017/5149362

Temporal Changes in Gene Expression Profile during Mature Adipocyte Dedifferentiation
Cited by: 9
Author(s): Johanne Côté, Frédéric Guénard, Julie Lessard, Marc Lapointe, Simon Biron, Marie‐Claude Vohl, André Tchernof
Software Mentions: 1
Published: almost 8 years ago

10.3390/molecules25132973

Verification of Chromatographic Profile of Primary Essential Oil of Pinus sylvestris L. Combined with Chemometric Analysis
Cited by: 13
Author(s): Martina Allenspach, Claudia Valder, Daniela Flamm, Francesca Grisoni, Christian Steuer
Software Mentions: 1
Published: over 4 years ago

10.3390/cells8040353

Folding Status Is Determinant over Traffic-Competence in Defining CFTR Interactors in the Endoplasmic Reticulum
Cited by: 21
Author(s): João Dourado Santos, Sara Canato, Ana Sofía Carvalho, Hugo M. Botelho, Kerman Aloria, Margarida D. Amaral, Rune Matthiesen, André O. Falcão, Carlos M. Farinha
Software Mentions: 1
Published: over 5 years ago