cran: FME | Projects | Ecosyste.ms: Papers

10.3389/fphys.2017.00917

Uncertainty Quantification Reveals the Importance of Data Variability and Experimental Design Considerations for in Silico Proarrhythmia Risk Assessment
Cited by: 66
Author(s): Kelly C. Chang, Sara Dutta, Gary R. Mirams, Kylie A. Beattie, Jiansong Sheng, Phu N. Tran, Min Wu, Wendy Wu, Thomas Colatsky, David G. Strauss, Zhihua Li
Software Mentions: 7
Published: almost 7 years ago

10.1016/j.tox.2017.03.012

The margin of internal exposure (MOIE) concept for dermal risk assessment based on oral toxicity data – A case study with caffeine
Cited by: 25
Author(s): Jos Bessems, Alicia Paini, M Gajewska, Andrew Worth
Software Mentions: 6
Published: almost 7 years ago

10.1111/tgis.12657

CityJSON in QGIS: Development of an open‐source plugin
Cited by: 13
Author(s): Stelios Vitalis, Ken Arroyo Ohori, J.E. Stoter
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pbio.3000562

Should a viral genome stay in the host cell or leave? A quantitative dynamics study of how hepatitis C virus deals with this dilemma
Cited by: 6
Author(s): Shoya Iwanami, Kosaku Kitagawa, Hirofumi Ohashi, Yasufumi Asai, Kaho Shionoya, Wakana Saso, Kazane Nishioka, Hisashi Inaba, Shinji Nakaoka, Takaji Wakita, Odo Diekmann, Shingo Iwami, Koichi Watashi
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-018-30244-9

On the use of functional responses to quantify emergent multiple predator effects
Cited by: 30
Author(s): Arnaud Sentis, David S. Boukal
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pcbi.1003646

Quantification of HTLV-1 Clonality and TCR Diversity
Cited by: 68
Author(s): Daniel J. Laydon, Anat Melamed, Aaron Sim, Nicolas Gillet, Kathleen Sim, Sam Darko, J. Simon Kroll, Daniel C. Douek, David A. Price, Charles R. M. Bangham, Becca Asquith
Software Mentions: 3
Published: about 10 years ago

10.1016/j.csbj.2018.10.013

Computational Modeling of Oxidative Stress in Fatty Livers Elucidates the Underlying Mechanism of the Increased Susceptibility to Ischemia/Reperfusion Injury
Cited by: 10
Author(s): Jana Schleicher, Uta Dahmen
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-020-69915-x

Ruminal volatile fatty acid absorption is affected by elevated ambient temperature
Cited by: 20
Author(s): A Bedford, Linda Beckett, Laura Harthan, Chong Wang, Ning Jiang, H. Schramm, Le Luo Guan, K.M. Daniels, M.D. Hanigan, Robin R. White
Software Mentions: 2
Published: about 4 years ago

10.1016/j.dib.2019.104616

Great Britain transport, housing, and employment access datasets for small-area urban area analytics
Cited by: 0
Author(s): Obinna C.D. Anejionu, Yeran Sun, Piyushimita Thakuriah, Andrew McHugh, Phillip E. Mason
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12302-018-0145-1

Comparison of software tools for kinetic evaluation of chemical degradation data
Cited by: 14
Author(s): Johannes Ranke, Janina Wöltjen, Stefan Meinecke
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pntd.0008736

A mathematical model for zoonotic transmission of malaria in the Atlantic Forest: Exploring the effects of variations in vector abundance and acrodendrophily
Cited by: 8
Author(s): Antônio Ralph Medeiros‐Sousa, Gabriel Zorello Laporta, Renato Mendes Coutinho, Luís Filipe Mucci, Mauro Toledo Marrelli
Software Mentions: 2
Published: over 3 years ago

10.3390/ijerph18010076

Targeting Malaria Hotspots to Reduce Transmission Incidence in Senegal
Cited by: 1
Author(s): Kankoé Sallah, Roch Giorgi, El Hadj Bâ, Martine Piarroux, Renaud Piarroux, Badara Cissé, Jean Gaudart
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pntd.0008789

How to choose the best control strategy? Mathematical models as a tool for pre-intervention evaluation on a macroparasitic disease
Cited by: 2
Author(s): Elisa Fesce, Claudia Romeo, Eleonora Chinchio, Nicola Ferrari
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0148389

Growth Type and Functional Trajectories: An Empirical Study of Urban Expansion in Nanjing, China
Cited by: 19
Author(s): Jianglong Chen, Jinlong Gao, Feng Yuan
Software Mentions: 2
Published: over 8 years ago

10.1186/2041-1480-5-20

My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models
Cited by: 12
Author(s): Olivier Palombi, Federico Ulliana, Valentin Favier, Jean-Claude Léon, Marie-Christine Rousset
Software Mentions: 2
Published: over 10 years ago

10.1371/journal.pone.0102367

Temperature and Photoperiod Interactions with Phosphorus-Limited Growth and Competition of Two Diatoms
Cited by: 16
Author(s): Tom Shatwell, Jan Köhler, Andreas Nicklisch
Software Mentions: 2
Published: about 10 years ago

10.1038/srep39494

A four-compartment PBPK heart model accounting for cardiac metabolism - model development and application
Cited by: 13
Author(s): Zofia Tylutki, Sebastian Polak
Software Mentions: 2
Published: over 7 years ago

10.1186/1471-2105-13-S14-S12

Modelling osteomyelitis
Cited by: 29
Author(s): Píetro Lió, Nicola Paoletti, Mohammad Ali Moni, Kathryn Atwell, Emanuela Merelli, Marco Viceconti
Software Mentions: 1
Published: about 12 years ago

10.3389/fmicb.2018.01663

Relevance of the Induced Stress Resistance When Identifying the Critical Microorganism for Microbial Risk Assessment
Cited by: 9
Author(s): Alberto Garre, José A. Egea, Asunción Iguaz, Alfredo Palop, Pablo Salvador Fernández Escámez
Software Mentions: 1
Published: about 6 years ago

10.1001/jamanetworkopen.2020.6785

Epidemiological Assessment of Imported Coronavirus Disease 2019 (COVID-19) Cases in the Most Affected City Outside of Hubei Province, Wenzhou, China
Cited by: 22
Author(s): Yi Han, Yi Liu, Liyuan Zhou, Enguo Chen, Pengyuan Liu, Xiaoqing Pan, Yan Lu
Software Mentions: 1
Published: over 4 years ago

10.1038/srep38749

Heterogeneous shedding of influenza by human subjects and its implications for epidemiology and control
Cited by: 16
Author(s): Laetitia Canini, Mark Woolhouse, Taronna R. Maines, Fabrice Carrat
Software Mentions: 1
Published: almost 8 years ago

10.1038/srep44765

Inferring biomarkers for Mycobacterium avium subsp. paratuberculosis infection and disease progression in cattle using experimental data
Cited by: 20
Author(s): Gesham Magombedze, Tinevimbo Shiri, Shigetoshi Eda, J. R. Stabel
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-017-03954-9

Number of infection events per cell during HIV-1 cell-free infection
Cited by: 11
Author(s): Yasutaka Ito, Azaria Remion, Alexandra Tauzin, Keisuke Ejima, Shinji Nakaoka, Yoh Iwasa, Shingo Iwami, Fabrizio Mammano
Software Mentions: 1
Published: about 7 years ago

10.3390/toxins12110698

Rapid Domoic Acid Depuration in the Scallop Argopecten purpuratus and Its Transfer from the Digestive Gland to Other Organs
Cited by: 11
Author(s): Gonzalo Álvarez, José Rengel, Michael Araya, Francisco Álvarez, Roberto Pino, Eduardo Uribe, Patricio A. Díaz, Araceli E. Rossignoli, Américo López-Rivera, Juan Blanco
Software Mentions: 1
Published: almost 4 years ago

10.1186/1476-072X-12-61

An objective index of walkability for research and planning in the Sydney Metropolitan Region of New South Wales, Australia: an ecological study
Cited by: 45
Author(s): Darren J Mayne, Geoffrey G. Morgan, Alan Willmore, Nick Rose, Bin Jalaludin, Hilary Bambrick, Adrian Bauman
Software Mentions: 1
Published: over 11 years ago

10.3390/ijerph8041206

Combining a Fuzzy Matter-Element Model with a Geographic Information System in Eco-Environmental Sensitivity and Distribution of Land Use Planning
Cited by: 18
Author(s): Jing Zhang, Ke Wang, Xinming Chen, Wei Zhu
Software Mentions: 1
Published: over 13 years ago

10.3389/fimmu.2017.00474

Physiologically Based Simulations of Deuterated Glucose for Quantifying Cell Turnover in Humans
Cited by: 11
Author(s): Julio Lahoz-Beneytez, Stephan Schaller, Derek C. Macallan, Thomas Eißing, Christoph Niederalt, Becca Asquith
Software Mentions: 1
Published: over 7 years ago

10.1186/s12876-021-01745-1

The emerging epidemic of inflammatory bowel disease in Asia and Iran by 2035: A modeling study
Cited by: 23
Author(s): Meysam Olfatifar, Mohammad Reza Zali, Mohamad Amin Pourhoseingholi, Hedieh Balaii, Shaghayegh Baradaran Ghavami, М. А. Іванчук, П. Р. Іванчук, Seyed Saeed Hashemi-Nazari, Shabnam Shahrokh, Siamak Sabour, Soheila Khodakarim, Hamid Asadzadeh Aghdaei, Pejman Rohani, Gholamhossein Mehralian
Software Mentions: 1
Published: over 3 years ago

10.1186/s12936-015-1048-x

Treatment-seeking rates in malaria endemic countries
Cited by: 53
Author(s): Katherine E. Battle, Donal Bisanzio, Harry S. Gibson, Samir Bhatt, Ewan Cameron, Daniel J. Weiss, Bonnie Mappin, Ursula Dalrymple, Rosalind E. Howes, Simon I. Hay, Peter W. Gething
Software Mentions: 1
Published: over 8 years ago

10.3390/microorganisms7110553

Computational Modelling of Metabolic Burden and Substrate Toxicity in Escherichia coli Carrying a Synthetic Metabolic Pathway
Cited by: 8
Author(s): Martin Demko, Lukáš Chrást, Pavel Dvořák, Jiřı́ Damborský, David Šafránek
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13071-018-3158-0

A trade-off between dry season survival longevity and wet season high net reproduction can explain the persistence of Anopheles mosquitoes
Cited by: 18
Author(s): Gesham Magombedze, Neil Ferguson, Azra C. Ghani
Software Mentions: 1
Published: almost 6 years ago

10.1186/s12989-018-0243-7

ISD3: a particokinetic model for predicting the combined effects of particle sedimentation, diffusion and dissolution on cellular dosimetry for in vitro systems
Cited by: 67
Author(s): Dennis Thomas, Jordan N. Smith, Brian D. Thrall, Donald R. Baer, Hadley Jolley, Prabhakaran Munusamy, Vamsi Kodali, Philip Demokritou, Julie Cohen, Justin G. Teeguarden
Software Mentions: 1
Published: over 6 years ago

10.3390/pharmaceutics11060278

Intracellular PD Modelling (PDi) for the Prediction of Clinical Activity of Increased Rifampicin Dosing
Cited by: 4
Author(s): Ghaith Aljayyoussi, Samantha Donnellan, Stephen A. Ward, Giancarlo A. Biagini
Software Mentions: 1
Published: over 5 years ago

10.1098/rstb.2014.0289

How is the effectiveness of immune surveillance impacted by the spatial distribution of spreading infections?
Cited by: 7
Author(s): Ulrich D. Kadolsky, Andrew J. Yates
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pbio.2005523

Human TSCM cell dynamics in vivo are compatible with long-lived immunological memory and stemness
Cited by: 40
Author(s): Pedro Costa del Amo, Julio Lahoz-Beneytez, Lies Boelen, Raya Ahmed, Kelly L. Miners, Yan Zhang, Lauréline Roger, Rhiannon E. Jones, Silvia A. Fuertes Marraco, Daniel E. Speiser, Duncan Martin Baird, David A. Price, Kristin Ladell, Derek C. Macallan, Becca Asquith
Software Mentions: 1
Published: about 6 years ago

10.1371/journal.pcbi.1003534

Rates of CTL Killing in Persistent Viral Infection In Vivo
Cited by: 33
Author(s): Marjet Elemans, Arnaud Florins, Luc Willems, Becca Asquith
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0146844

Can Immune Response Mechanisms Explain the Fecal Shedding Patterns of Cattle Infected with Mycobacterium avium Subspecies paratuberculosis?
Cited by: 17
Author(s): Gesham Magombedze, Shigetoshi Eda, Ad P. Koets
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0076636

Evalution of the “Iceberg Phenomenon” in Johne's Disease through Mathematical Modelling
Cited by: 27
Author(s): Gesham Magombedze, Calistus N. Ngonghala, Cristina Lanzas
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0183742

Predicting active-layer soil thickness using topographic variables at a small watershed scale
Cited by: 12
Author(s): Aidi Li, Xing Tan, Wei Wu, Hongbin Liu, Jiang Zhu
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pone.0141539

Predicting the Role of IL-10 in the Regulation of the Adaptive Immune Responses in Mycobacterium avium Subsp. paratuberculosis Infections Using Mathematical Models
Cited by: 18
Author(s): Gesham Magombedze, Shigetoshi Eda, J. R. Stabel
Software Mentions: 1
Published: almost 9 years ago

10.1016/j.celrep.2020.108501

CD57+ Memory T Cells Proliferate In Vivo
Cited by: 16
Author(s): Raya Ahmed, Kelly L. Miners, Julio Lahoz-Beneytez, Rhiannon E. Jones, Lauréline Roger, C. Baboonian, Yan Zhang, Edward Chung Yern Wang, Marc K. Hellerstein, Joseph M. McCune, Duncan Martin Baird, David A. Price, Derek C. Macallan, Becca Asquith, Kristin Ladell
Software Mentions: 1
Published: almost 4 years ago

10.1002/cpt.621

Predicting CD4 T-Cell Reconstitution Following Pediatric Hematopoietic Stem Cell Transplantation
Cited by: 16
Author(s): Rollo L. Hoare, Paul Veys, Nigel Klein, Robin E. Callard, Joseph F. Standing
Software Mentions: 1
Published: over 7 years ago

10.3389/fimmu.2017.00933

Dynamics of Recent Thymic Emigrants in Young Adult Mice
Cited by: 16
Author(s): Vera van Hoeven, Julia Drylewicz, Liset Westera, Ineke den Braber, Tendai Mugwagwa, Kiki Tesselaar, José A. M. Borghans, Rob J. de Boer
Software Mentions: 1
Published: about 7 years ago

Projects: cran: FME

Papers Mentioning FME 43