Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PresenceAbsence

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PresenceAbsence

Presence-Absence Model Evaluation
10 versions
Latest release: almost 2 years ago
7 dependent packages
3,064 downloads last month

Papers Mentioning PresenceAbsence 41

10.1002/ece3.7294
Determinants of habitat suitability models transferability across geographically disjunct populations: Insights from <i>Vipera ursinii urs</i> <i>inii</i>
Cited by: 8
Author(s): Francesco Cerasoli, Aurélien Besnard, Marc-Antoine Marchand, Paola D’Alessandro, Mattia Iannella, Maurizio Biondi
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0207126
Prognostic function to estimate the probability of meaningful clinical improvement after surgery - Results of a prospective multicenter observational cohort study on patients with lumbar spinal stenosis
Cited by: 20
Author(s): Ulrike Held, Jakob M Burgstaller, Maria M. Wertli, Giuseppe Pichierri, Sebastian Winklhofer, Florian Brunner, François Porchet, Mazda Farshad, Johann Steurer
Software Mentions: 11
Published: about 6 years ago
10.1186/s13071-019-3812-1
Modelling temporal dynamics of Culicoides Latreille (Diptera: Ceratopogonidae) populations on Reunion Island (Indian Ocean), vectors of viruses of veterinary importance
Cited by: 8
Author(s): Yannick Grimaud, Hélène Guis, Frédéric Chiroleu, Floriane Boucher, Annelise Tran, Ignace Rakotoarivony, Maxime Duhayon, Catherine Cêtre-Sossah, Olivier Esnault, Éric Cardinale, Claire Garros
Software Mentions: 9
Published: almost 5 years ago
10.1371/journal.pone.0257005
Comparison of machine learning methods for estimating case fatality ratios: An Ebola outbreak simulation study
Cited by: 1
Author(s): Alpha Forna, Ilaria Dorigatti, Pierre Nouvellet, Christl A. Donnelly
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pntd.0005722
Intrinsic and extrinsic factors related to pathogen infection in wild small mammals in intensive milk cattle and swine production systems
Cited by: 23
Author(s): Rosario Lovera, María Soledad Fernández, Jens Jacob, Nidia E. Lucero, Gabriel Morici, Bibiana Brihuega, María Isabel Farace, Jorge Caracostantogolo, Regino Cavia
Software Mentions: 4
Published: over 7 years ago
10.1186/1476-072X-11-39
Modelling zoonotic diseases in humans: comparison of methods for hantavirus in Sweden
Cited by: 30
Author(s): Caroline Zeimes, Gert E. Olsson, Clas Ahlm, Sophie Vanwambeke
Software Mentions: 4
Published: almost 13 years ago
10.1371/journal.pone.0072420
Are Regional Habitat Models Useful at a Local-Scale? A Case Study of Threatened and Common Insectivorous Bats in South-Eastern Australia
Cited by: 5
Author(s): Anna McConville, Bradley Law, Michael Mahony
Software Mentions: 4
Published: over 11 years ago
10.1371/journal.pone.0117917
Spatial Niche Partitioning in Sub-Tropical Solitary Ungulates: Four-Horned Antelope and Barking Deer in Nepal
Cited by: 20
Author(s): Krishna Prasad Pokharel, Tobias Ludwig, Ilse Storch
Software Mentions: 4
Published: over 9 years ago
10.1098/rspb.2016.2533
Drivers and predictions of coral reef carbonate budget trajectories
Cited by: 39
Author(s): Fraser A. Januchowski–Hartley, Nicholas A. J. Graham, Shaun K. Wilson, Simon Jennings, Chris T. Perry
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pone.0120014
Poor Transferability of Species Distribution Models for a Pelagic Predator, the Grey Petrel, Indicates Contrasting Habitat Preferences across Ocean Basins
Cited by: 80
Author(s): Leigh G. Torres, Philip Sutton, David R. Thompson, Karine Delord, Henri Weimerskirch, Paul M. Sagar, Erica Sommer, Ben J. Dilley, Peter G. Ryan, Richard A. Phillips
Software Mentions: 4
Published: over 9 years ago
10.1002/ece3.4005
Areas of high conservation value at risk by plant invaders in Georgia under climate change
Cited by: 12
Author(s): Daniel Slodowicz, Patrice Descombes, David Kikodze, Olivier Broennimann, Heinz Müller‐Schärer
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pone.0204569
Managers, modelers, and measuring the impact of species distribution model uncertainty on marine zoning decisions
Cited by: 3
Author(s): Bryan Costa, Matthew S. Kendall, Steven C. McKagan
Software Mentions: 3
Published: about 6 years ago
10.1371/journal.pone.0139390
The Foraging Ecology of the Endangered Cape Verde Shearwater, a Sentinel Species for Marine Conservation off West Africa
Cited by: 22
Author(s): Vítor H. Paiva, Pedro Geraldes, Isabel Rodrigues, Tommy Melo, José Wagner da Silva Melo, Jaime A. Ramos
Software Mentions: 3
Published: about 9 years ago
10.1371/journal.pone.0033246
Effects of Frugivore Preferences and Habitat Heterogeneity on Seed Rain: A Multi-Scale Analysis
Cited by: 24
Author(s): Javier Rodríguez‐Pérez, Asier R. Larrinaga, Luis Santamarı́a
Software Mentions: 3
Published: over 12 years ago
10.1371/journal.pone.0220854
Environmental characteristics associated with the presence of the Spinetail devil ray (Mobula mobular) in the eastern tropical Pacific
Cited by: 20
Author(s): Nerea Lezama-Ochoa, Martín Hall, María Grazia Pennino, Joshua Stewart, Jon López, Hilário Murua
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0179686
A spatially explicit risk assessment approach: Cetaceans and marine traffic in the Pelagos Sanctuary (Mediterranean Sea)
Cited by: 35
Author(s): María Grazia Pennino, Antonella Arcangeli, Vinícius Prado Fonseca, Ilaria Campana, Graham J. Pierce, Alexandre T. Rotta, José María Bellido
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0054179
Assessing Community-Level and Single-Species Models Predictions of Species Distributions and Assemblage Composition after 25 Years of Land Cover Change
Cited by: 14
Author(s): Sébastien Bonthoux, Andrés Baselga, Gérard Balent
Software Mentions: 3
Published: almost 12 years ago
10.1186/1756-3305-7-370
Shaping zoonosis risk: landscape ecology vs. landscape attractiveness for people, the case of tick-borne encephalitis in Sweden
Cited by: 36
Author(s): Caroline Zeimes, Gert E. Olsson, Marika Hjertqvist, Sophie Vanwambeke
Software Mentions: 3
Published: almost 11 years ago
10.1038/s41598-018-35920-4
Cytokine Thresholds in Gingival Crevicular Fluid with Potential Diagnosis of Chronic Periodontitis Differentiating by Smoking Status
Cited by: 16
Author(s): Nora Arias-Bujanda, Alba Regueira-Iglesias, Manuela Alonso-Sampedro, Maria Mercedes González-Peteiro, Álex Mira, Carlos Balsa-Castro, Inmaculada Tomás
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-020-74682-w
Applying species distribution models in public health research by predicting snakebite risk using venomous snakes’ habitat suitability as an indicating factor
Cited by: 15
Author(s): Masoud Yousefi, Anooshe Kafash, Ali Khani, Nima Nabati
Software Mentions: 3
Published: about 4 years ago
10.1038/s41598-020-73879-3
Using a Bayesian modelling approach (INLA-SPDE) to predict the occurrence of the Spinetail Devil Ray (Mobular mobular)
Cited by: 17
Author(s): Nerea Lezama-Ochoa, María Grazia Pennino, Martín Hall, Jon López, Hilário Murua
Software Mentions: 3
Published: about 4 years ago
10.1186/1476-072X-13-26
Environmental predictors of West Nile fever risk in Europe
Cited by: 72
Author(s): Annelise Tran, Bertrand Súdre, Shlomit Paz, Massimiliano Rossi, Annie Desbrosse, Véronique Chevalier, Jan C. Semenza
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0229600
Differential effects of habitat loss on occupancy patterns of the eastern green lizard Lacerta viridis at the core and periphery of its distribution range
Cited by: 4
Author(s): Ana María Prieto-Ramirez, Leonie Röhler, Anna F. Cord, Guy Pe’er, Dennis Rödder, Klaus Henle
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0134043
Potential Effects of Climate Change on the Distribution of Cold-Tolerant Evergreen Broadleaved Woody Plants in the Korean Peninsula
Cited by: 32
Author(s): Kyung Ah Koo, Woo-Seok Kong, Nathan P. Nibbelink, Charles S. Hopkinson, Woo Jung Lee
Software Mentions: 2
Published: over 9 years ago
10.1002/ece3.2138
Microhabitat selection in the common lizard: implications of biotic interactions, age, sex, local processes, and model transferability among populations
Cited by: 15
Author(s): Miguel Peñalver‐Alcázar, Pedro Aragón, Merel C. Breedveld, Patrick S. Fitze
Software Mentions: 2
Published: over 8 years ago
10.1002/ece3.4274
Past distribution of epiphyllous liverworts in China: The usability of historical data
Cited by: 8
Author(s): Yanbin Jiang, Tiejun Wang, Yupeng Wu, Ronggui Hu, Ke Huang, Xingling Shao
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0151340
Population-Scale Foraging Segregation in an Apex Predator of the North Atlantic
Cited by: 9
Author(s): Vítor H. Paiva, Ana Isabel Fagundes, Vera Romão, Cátia Gouveia, Jaime A. Ramos
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0129833
A Multi-Scale Approach to Investigating the Red-Crowned Crane–Habitat Relationship in the Yellow River Delta Nature Reserve, China: Implications for Conservation
Cited by: 16
Author(s): Mingchang Cao, Haigen Xu, Zhifang Le, Zhu MingChang, Yun Cao
Software Mentions: 2
Published: over 9 years ago
10.1002/ece3.7210
How citizen science could improve species distribution models and their independent assessment
Cited by: 20
Author(s): Florence Matutini, Jacques Baudry, Guillaume Pain, Sineau Morgane, Joséphine Pithon
Software Mentions: 2
Published: over 3 years ago
10.7717/peerj.3477
Predicting suitable habitat of the Chinese monal (<i>Lophophorus lhuysii</i>) using ecological niche modeling in the Qionglai Mountains, China
Cited by: 20
Author(s): Bin Wang, Yu Xu, Jianghong Ran
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0106638
A Multi-Scale Distribution Model for Non-Equilibrium Populations Suggests Resource Limitation in an Endangered Rodent
Cited by: 11
Author(s): William T. Bean, Robert Stafford, H. Scott Butterfield, Justin S. Brashares
Software Mentions: 2
Published: about 10 years ago
10.1371/journal.pone.0094268
Predicting Non Return to Work after Orthopaedic Trauma: The Wallis Occupational Rehabilitation RisK (WORRK) Model
Cited by: 21
Author(s): François Lüthi, Olivier Dériaz, Philippe Vuistiner, Cyrille Burrus, Roger Hilfiker
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0122721
Predicting Plant Diversity Patterns in Madagascar: Understanding the Effects of Climate and Land Cover Change in a Biodiversity Hotspot
Cited by: 34
Author(s): Kerry A. Brown, Katherine E. Parks, Colin A. Bethell, Steig E. Johnson, Mark Mulligan
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0126424
Detecting Fragmentation Extinction Thresholds for Forest Understory Plant Species in Peninsular Spain
Cited by: 9
Author(s): Marta Pacheco Rueda, Juan Carlos Moreno Sáiz, Ignacio Morales‐Castilla, Fábio Suzart de Albuquerque, Mila Ferrero, Miguel Á. Rodrı́guez
Software Mentions: 1
Published: over 9 years ago
10.1007/s10926-016-9688-4
A Return-to-Work Prognostic Model for Orthopaedic Trauma Patients (WORRK) Updated for Use at 3, 12 and 24 Months
Cited by: 8
Author(s): Chantal Plomb-Holmes, François Lüthi, Philippe Vuistiner, Bertrand Léger, Roger Hilfiker
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0187284
Increased sediment loads cause non-linear decreases in seagrass suitable habitat extent
Cited by: 24
Author(s): Megan I. Saunders, Scott Atkinson, Carissa J. Klein, Tony Weber, Hugh P. Possingham
Software Mentions: 1
Published: about 7 years ago
10.7717/peerj.7771
Assessing the effect of fish size on species distribution model performance in southern Chilean rivers
Cited by: 4
Author(s): Daniel Zamorano, Fabio A. Labra, Marcelo Villarroel, Shaw Nozaki Lacy, Luca Mao, Marcelo A. Olivares, Matías Peredo-Parada
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0025628
Comparative Phylogeography of a Coevolved Community: Concerted Population Expansions in Joshua Trees and Four Yucca Moths
Cited by: 65
Author(s): Christopher Irwin Smith, Shantel Tank, William Godsoe, Jim Levenick, Eva K. Strand, Todd C. Esque, Olle Pellmyr
Software Mentions: 1
Published: about 13 years ago
10.1038/srep29932
Proximate drivers of spatial segregation in non-breeding albatrosses
Cited by: 44
Author(s): Thomas A. Clay, Andrea Manica, Peter G. Ryan, Janet R. D. Silk, John P. Croxall, Louise Ireland, Richard A. Phillips
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0183143
Pet snakes illegally marketed in Brazil: Climatic viability and establishment risk
Cited by: 5
Author(s): Érica L. Fonseca, Mirco Solé, Dennis Rödder, Paulo de Marco Júnior
Software Mentions: 1
Published: over 7 years ago
10.1038/s41598-017-17946-2
Comparing two remote video survey methods for spatial predictions of the distribution and environmental niche suitability of demersal fishes
Cited by: 9
Author(s): Ronen Galaiduk, Ben Radford, Shaun K. Wilson, Euan S. Harvey
Software Mentions: 1
Published: almost 7 years ago