cran: CTD | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2018.01100

nifPred: Proteome-Wide Identification and Categorization of Nitrogen-Fixation Proteins of Diaztrophs Based on Composition-Transition-Distribution Features Using Support Vector Machine
Cited by: 10
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, Jyotilipsa Mohanty, Shachi Gahoi, P. Supriya, Monendra Grover, Atmakuri Ramakrishna Rao
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pcbi.1008550

CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models
Cited by: 9
Author(s): Lillian R Thistlethwaite, Varduhi Petrosyan, Xiqi Li, Marcus J. Miller, Sarah H. Elsea, Aleksandar Milosavljevic
Software Mentions: 5
Published: almost 4 years ago

10.1186/1755-8794-6-2

Next-generation text-mining mediated generation of chemical response-specific gene sets for interpretation of gene expression data
Cited by: 13
Author(s): Kristina Hettne, André Boorsma, Dorien A.M. van Dartel, Jelle J. Goeman, Esther de Jong, Aldert H. Piersma, Rob Stierum, Jos Kleinjans, Jan A. Kors
Software Mentions: 5
Published: almost 12 years ago

10.1038/s41389-020-00245-3

Histoepigenetic analysis of the mesothelin network within pancreatic ductal adenocarcinoma cells reveals regulation of retinoic acid receptor gamma and AKT by mesothelin
Cited by: 6
Author(s): Eugene Lurie, Dongliang Liu, Emily L. LaPlante, Lillian R Thistlethwaite, Qizhi Yao, Aleksandar Milosavljevic
Software Mentions: 4
Published: over 4 years ago

10.3390/s21061945

A Straightforward and Efficient Instance-Aware Curved Text Detector
Cited by: 2
Author(s): Fan Zhao, Sidi Shao, Lin Zhang, Zhiquan Wen
Software Mentions: 4
Published: over 3 years ago

10.3390/genes10090672

PredLnc-GFStack: A Global Sequence Feature Based on a Stacked Ensemble Learning Method for Predicting lncRNAs from Transcripts
Cited by: 20
Author(s): Shuai Liu, Xiaohan Zhao, Guangyan Zhang, Weiyang Li, Feng Liu, Shichao Liu, Wen Zhang
Software Mentions: 4
Published: about 5 years ago

10.3389/fphar.2019.00445

The NCATS BioPlanet – An Integrated Platform for Exploring the Universe of Cellular Signaling Pathways for Toxicology, Systems Biology, and Chemical Genomics
Cited by: 151
Author(s): Ruili Huang, Ivan Grishagin, Yuhong Wang, Tongan Zhao, Jon Greene, John C. Obenauer, Deborah K. Ngan, Ðắc-Trung Nguyễn, Rajarshi Guha, Ajit Jadhav, Noel Southall, Anton Simeonov, Christopher P. Austin
Software Mentions: 3
Published: over 5 years ago

10.1155/2020/1817094

Identification of Crucial lncRNAs, miRNAs, mRNAs, and Potential Therapeutic Compounds for Polycystic Ovary Syndrome by Bioinformatics Analysis
Cited by: 9
Author(s): Zhi Zeng, Xiao Lin, Tingting Xia, Wenxiu Liu, Xingui Tian, Manchao Li
Software Mentions: 3
Published: about 4 years ago

10.1186/1752-0509-8-34

Network and matrix analysis of the respiratory disease interactome
Cited by: 3
Author(s): Benjamin J. Garcia, Gargi Datta, Gregory P. Cosgrove, Michael Strong
Software Mentions: 3
Published: over 10 years ago

10.3390/microorganisms9030657

Bacterial Dimethylsulfoniopropionate Biosynthesis in the East China Sea
Cited by: 9
Author(s): Ji Liu, Yunhui Zhang, Jingli Liu, Haohui Zhong, Beth T. Williams, Yanfen Zheng, Andrew R. J. Curson, Chuang Sun, Hao Sun, Delei Song, Brett Wagner Mackenzie, Ana Bermejo Martínez, Jonathan D. Todd, Xiaohua Zhang
Software Mentions: 3
Published: over 3 years ago

10.1038/celldisc.2016.51

Structural mechanism for the arginine sensing and regulation of CASTOR1 in the mTORC1 signaling pathway
Cited by: 33
Author(s): Zhongchao Gai, Qian Wang, Can Yang, Lei Wang, Wei Deng, Geng Wu
Software Mentions: 3
Published: almost 8 years ago

10.3389/fphar.2019.00839

Global Text Mining and Development of Pharmacogenomic Knowledge Resource for Precision Medicine
Cited by: 8
Author(s): Debleena Guin, Jyoti Rani, Priyanka Singh, Sandeep Grover, Shivangi Bora, Puneet Talwar, Karthikeyan Muthusamy, Kapaettu Satyamoorthy, C Adithan, Srinivasan Ramachandran, Luciano Saso, Yasha Hasija, Ritushree Kukreti
Software Mentions: 2
Published: about 5 years ago

10.1289/EHP174

Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database
Cited by: 37
Author(s): Cynthia Grondin, Allan Peter Davis, Thomas C. Wiegers, Benjamin L. King, Jolene Wiegers, David M. Reif, Jane A. Hoppin, Carolyn J. Mattingly
Software Mentions: 2
Published: about 8 years ago

10.1186/s12864-016-3263-4

Predicting disease-related genes using integrated biomedical networks
Cited by: 45
Author(s): Jiajie Peng, Kun Bai, Xuequn Shang, Guohua Wang, Hansheng Xue, Shuilin Jin, Cheng Liang, Yadong Wang, Jin Chen
Software Mentions: 2
Published: almost 8 years ago

10.1093/database/baw062

ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings
Cited by: 6
Author(s): Dennis Pelletier, Thomas C. Wiegers, Ahmed Enayetallah, Christopher E. Kibbey, Mark Gosink, Petra Koza-Taylor, Carolyn J. Mattingly, Michael Lawton
Software Mentions: 2
Published: almost 9 years ago

10.1371/journal.pone.0198030

Data-driven analysis of biomedical literature suggests broad-spectrum benefits of culinary herbs and spices
Cited by: 23
Author(s): N K Rakhi, Rudraksh Tuwani, Jaya Mukherjee, Ganesh Bagler
Software Mentions: 2
Published: over 6 years ago

10.1093/database/bau050

Web services-based text-mining demonstrates broad impacts for interoperability and process simplification
Cited by: 22
Author(s): Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Software Mentions: 2
Published: over 10 years ago

10.1186/1471-2105-10-326

Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD)
Cited by: 112
Author(s): Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly
Software Mentions: 2
Published: about 15 years ago

10.1155/2020/4062813

Study on Mechanism of Iridoid Glycosides Derivatives from Fructus Gardeniae in Jiangxi Province by Network Pharmacology
Cited by: 3
Author(s): Fangzhou Liu, Yuanbai Li, Meng Li, Jing Wang, Yiying Zhang, Yu Du, Yang Yang
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-018-2463-0

DLAD4U: deriving and prioritizing disease lists from PubMed literature
Cited by: 1
Author(s): Junhui Shen, Suhas Vasaikar, Fangfang Zhang
Software Mentions: 2
Published: almost 6 years ago

10.1186/1758-2946-3-24

Data governance in predictive toxicology: A review
Cited by: 37
Author(s): Xin Fu, Anna Wojak, Daniel Neagu, Mick Ridley, Kim Z. Travis
Software Mentions: 1
Published: over 13 years ago

10.3390/polym12071515

Non-Isothermal Crystallisation Kinetics of Polypropylene at High Cooling Rates and Comparison to the Continuous Two-Domain pvT Model
Cited by: 5
Author(s): Jonathan Alms, Christian Hopmann, Wang Jian, Tobias Hohlweck
Software Mentions: 1
Published: over 4 years ago

10.1186/s13643-020-01323-8

Integrated care pathways for Black persons with traumatic brain injury: a protocol for a critical transdisciplinary scoping review
Cited by: 4
Author(s): Samira Omar, LLana James, Angela Colantonio, Stephanie Nixon
Software Mentions: 1
Published: over 4 years ago

10.3390/ijerph14101158

Identification of Linkages between EDCs in Personal Care Products and Breast Cancer through Data Integration Combined with Gene Network Analysis
Cited by: 6
Author(s): Hye-ri Jeong, Jongwoon Kim, Young‐Jun Kim
Software Mentions: 1
Published: about 7 years ago

10.3390/cancers12092694

Applications of Genome-Wide Screening and Systems Biology Approaches in Drug Repositioning
Cited by: 13
Author(s): Elyas Mohammadi, Rui Benfeitas, Hasan Türkez, Jan Borén, Jens Nielsen, Mathias Uhlén, Adil Mardinoğlu
Software Mentions: 1
Published: about 4 years ago

10.1007/s00204-014-1387-3

Workshop report: Identifying opportunities for global integration of toxicogenomics databases, 26–27 June 2013, Research Triangle Park, NC, USA
Cited by: 11
Author(s): Diana M. Hendrickx, Rebecca Boyles, Jos Kleinjans, Allen Dearry
Software Mentions: 1
Published: about 10 years ago

10.1186/1755-8794-1-48

The Comparative Toxicogenomics Database facilitates identification and understanding of chemical-gene-disease associations: arsenic as a case study
Cited by: 62
Author(s): Allan Peter Davis, Cynthia G. Murphy, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
Software Mentions: 1
Published: about 16 years ago

10.1155/2018/6821601

Inhibitor of Differentiation-3 and Estrogenic Endocrine Disruptors: Implications for Susceptibility to Obesity and Metabolic Disorders
Cited by: 8
Author(s): Mayur Doke, Vincent Avecilla, Quentin Felty
Software Mentions: 1
Published: almost 7 years ago

10.1007/s10579-021-09554-4

Identifying communicative functions in discourse with content types
Cited by: 1
Author(s): Tommaso Caselli, Sprugnoli Rachele, Giovanni Moretti
Software Mentions: 1
Published: over 3 years ago

10.1186/1475-2875-12-451

Failure of malaria chemoprophylaxis with mefloquine in an oversize traveller to Mozambique
Cited by: 5
Author(s): Federico Gobbi, Andrea Rossanese, Dora Buonfrate, Andrea Angheben, Gianluigi Lunardi, Zeno Bisoffi
Software Mentions: 1
Published: almost 11 years ago

10.1186/s12969-017-0143-7

Proceedings of the 23rd Paediatric Rheumatology European Society Congress: part three
Cited by: 6
Author(s): Riccardo Papa, Alessandro Consolaro, Francesca Minoia, Roberta Caorsi, Gianmichele Magnano, Marco Gattorno, Angelo Ravelli, Paolo Picco, Roberto Pillon, Denise Pires Marafon, Lidia Meli, Claudia Bracaglia, Andrea Taddio, Fabrizio Benedetti, Enes Turan, Sara Şebnem Kılıç, Yasuhiko Itoh, Tomoko Shigemori, Shingo Yamanishi, Hidehiko Nagasaki, Ela Tarakçı, Nilay Arman, Devrim Tarakçı, Yusuf Sinan Akgül, Özgür Kasapçopur, Emily Wilson, Hanna Lythgoe, Eve M D Smith, Jenny Preston, Michael W. Beresford, Lynn Spiegel, Jennifer Stinson, Mark Connelly, Adam M. Huber, Nadia Luca, Argerie Tsimicalis, Stephanie Luca, Naweed Tajuddin, Roberta Berard, Julie Barsalou, Sarah Campillo, Brian M. Feldman, Shirley M. L. Tse, Paul Dancey, Ciarán M. Duffy, Nicole Johnson, Patrick J. McGrath, Natalie J. Shiff, Lori B. Tucker, Charles Victor, Lynn Spiegel, Chitra Lalloo, Lauren Harris, Joseph A. Cafazzo, Lori B. Tucker, Kristin Houghton, Brian M. Feldman, Nadia Luca, Ronald M. Laxer, Jennifer Stinson, Nilay Arman, Ela Tarakçı, Özgür Kasapçopur, Madeleine Rooney, Roisin Campbell, C. Wright, Wineke Armbrust, Otto Lelieveld, Jolanda Tuinstra, Nico Wulffraat, Joyce Bos, Jeanette Cappon, Marion van Rossum, Mariët Hagedoorn, Anna Vermé, Ylva Lampela, Ayse Huri Ozdogan, Serdal Uğurlu, Kenan Barut, A. Androvic, O. Kasapçopu, Emily Wilson, Jody Etheridge, Eve M D Smith, Katie Dobson, Sue Kemp, Michael W. Beresford, AnnaCarin Horne, Karin Palmblad, Malin Höglund, Natalia Stepanenko, С. О. Салугина, Evgeny Fedorov, Irina Nikishina, М. И. Каледа, Nilay Arman, Ela Tarakçı, Kenan Barut, Amra Adroviç, Sezgin Şahin, Özgür Kasapçopur, Nilay Arman, Ela Tarakçı, Özgür Kasapçopur, Laurence Toumoulin, Johnny Frossard, Stephanie Archimbaut, Anne Paitier, R. Guastalli, Séverine Guillaume Czitrom, Sirirat Charuvanij, Chollada Chaiyadech, Takako Miyamae, Hisashi Yamanaka, Cécile Picard, Guillaume Thouvenin, Caroline Kannengiesser, Jean‐Christophe Dubus, Nadia Jeremiah, Frédéric Rieux‐Laucat, Bruno Crestani, Véronique Secq, Christelle Ménard, Martine Reynaud‐Gaubert, F. Thivolet‐Béjui, Philippe Reix, Alexandre Belot, Ezgi Deniz Batu, Hafize Emine Sönmez, Abdülsamet Erden, Ekim Z. Taşkıran, Ömer Karadağ, Umut Kalyoncu, İbrahim Oncel, Berkan Kaplan, Zehra Serap Arıcı, Çağrı Mesut Temuçin, Haluk Topaloğlu, Yelda Bilginer, Mehmet Alikaşifoğlu, Seza Özen, Lien Van Eyck, Ellen De Langhe, Isabelle Jéru, Erika Van Nieuwenhove, Vasiliki Lagou, Paul J. Baker, Jocelyn Garcia-Perez, James Dooley, Lien De Somer, Raf Sciot, Pierre-Yves Jeandel, Julia Ruuth-Praz, Bruno Copin, Myrna Medley-Hashim, André Mégarbané, Sinisa Savic, An Goris, Serge Amselem, Adrian Liston, Seth L. Masters, Carine Wouters, Nobuhiko Okamoto, Yuko Sugita, Kousuke Shabana, Takuji Murata, Hiroshi Tamai, Juliana Ferenczová, Erika Banóova, Pavol Mrážik, Veronika Vargová, Dubravko Bajramović, Ksenija Štekić Novački, Kristina Potočki, Marijan Frković, Marija Jelušić, Irina Nikishina, О. М. Костарева, S. Arsenyeva, М. И. Каледа, A. Shapovalenko, Lennart Jans, Nele Herregods, J Jaremko, Rik Joos, Joke Dehoorne, Nele Herregods, Jacob L. Jaremko, Xenofon Baraliakos, Joke Dehoorne, Rik Joos, Lennart Jans, Josef S Smolen, Julio Casasola-Vargas, Désirée van der Heijde, Robert Landewé, Rubén Burgos‐Vargas, Rubén Burgos‐Vargas, Shirley M. L. Tse, Gerd Horneff, Kristina Unnebrink, J. Anderson, Ayşenur Paç Kısaarslan, Betül Sözeri, Zübeyde Gündüz, Gökmen Zararsız, Hakan Poyrazoǧlu, Ruhan Düşünsel, Kazutaka Ouchi, Shinji Akioka, Hiroshi Kubo, Norio Nakagawa, Hajime Hosoi, Lovro Lamot, Fran Borovečki, Sanja Kapitanović, Kristina Gotovac, Mandica Vidović, Mirta Lamot, Edi Paleka Bosak, Miroslav Harjaček, Ricardo Russo, María M. Katsicas, Rubén Burgos Vargas, Ana L. Ortiz-Peyegahud, Pingping Zhang, Y. Mou, Jun Qi, Yutong Jiang, Gu J, Mikhail M. Kostik, Shilova Ekaterina, Ilia S. Avrusin, Yuriy Korin, О. Л. Копчак, Е. А. Исупова, И. А. Чикова, Panova Tatyana, Margarita Dubko, Vera Masalova, Ludmila Snegireva, Tatyana Kornishina, Olga V. Kalashnikova, Vyacheslav Chasnyk, Mikhail M. Kostik, И. А. Чикова, Е. А. Исупова, Margarita Dubko, Vera Masalova, Ludmila Snegireva, Tatyana Kornishina, Tatyana Likhacheva, Olga V. Kalashnikova, Vyacheslav Chasnyk, Nicolino Ruperto, H. I. Brunner, Pierre Quartier, T. Constantin, Е.I. Alexeeva, R. Schneider, Isabelle Koné‐Paut, K. Schikler, K. Marzan, Nico Wulffraat, Shai Padeh, Vyacheslav Chasnyk, Carine Wouters, J. B. Kuemmerle‐Deschner, T. Kallinich, Bernard Lauwerys, E. Haddad, E. Nasonov, Maria Trachana, Olga Vougiouka, K. Leon, A. Speziale, K. Lheritier, Eleni Vritzali, Alberto Martini, D. Lovell, Nienke Ter Haar, Rianne C. Scholman, Wilco de Jager, Tamar Tak, Pieter H. C. Leliefeld, Bas Vastert, Sytze de Roock, Nienke Ter Haar, Rianne C. Scholman, Wilco de Jager, Ariane de Ganck, Nadia Ryter, Miha Lavrič, Dirk Foell, Sytze de Roock, Bas Vastert, Renee Modica, Kathleen G. Lomax, Pamela Batzel, Armelle Cassanas, Melissa E. Elder, Р. В. Денисова, Е.I. Alexeeva, С. И. Валиева, Т.М. Бзарова, K. Isayeva, Т. В. Слепцова, О. Л. Ломакина, Alexandra Chomahidze, М. А. Солошенко, M. Shingarova, Elena Kachshenko, Wilco de Jager, Sebastiaan J. Vastert, Gerdien Mijnheer, Berent J. Prakken, Nico Wulffraat, Hafize Emine Sönmez, Asuman Nur Karhan, Ezgi Deniz Batu, Yelda Bilginer, Zehra Serap Arıcı, Ersin Gümüş, Hülya Demır, Aysel Yüce, Seza Özen, Jasmina Ahluwalia, Bhavneet Bharti, Sweta Rajpal, Varun Uppal, Alaknanda Walia, Surjit S. Samlok, Narender Kumar, Clarissa C.M. Valões, B. Molinari, Ana C. Pitta, Natali W.S. Gormezano, Sylvia Costa Lima Farhat, Kátia Kozu, Adriana Maluf Elias Sallum, Simone Appenzeller, Ana Paula Sakamoto, Maria Teresa Terreri, Rosa M. Pereira, Cláudia Saad Magalhães, Cássia Maria Passarelli Lupoli Barbosa, Francisco Hugo Rodrigues Gomes, Eloísa Bonfá, Clóvis A. Silva, Kübra Öztürk, Zelal Ekinci, Maie Helal, Natalia Cabrera, Alexandre Belot, J.C. Lega, Jocelyne Drai, René Écochard, О. В. Шпитонкова, N.S. Podchernyaeva, Y. O. Kostina, Н. Г. Дашкова, Maria Osminina, Gözde Yücel, Sezgin Şahin, Amra Adroviç, Kenan Barut, Ela Tarakçı, Ahmet Arvas, Nandini Moorthy, Özgür Kasapçopur, Paraskevi Dimou, Angela Midgley, Matthew Peak, Simon C. Satchell, Rachael D. Wright, Michael W. Beresford, Rachel Corkhill, Eve M D Smith, Michael W. Beresford, Sagar Bhattad, Amit Rawat, Surjit Singh, Anju Gupta, Deepti Suri, Martin de Boer, Taco W. Kuijpers, Sagar Bhattad, Amit Rawat, Anju Gupta, Deepti Suri, Vignesh Pandiarajan, Surjit Singh, Sapna Sandal, Amit Rawat, Anju Gupta, Surjit Singh, Sebastián Giraldo, Roy Sanguino, Adriana S. Diaz, Selçuk Uzuner, Sezgin Şahin, Gizem Durcan, Amra Adroviç, Kenan Barut, Ali Güven Kılıçoğlu, Ayhan Bi̇lgi̇ç, Kayhan Bahalı, Özgür Kasapçopur, Sezgin Şahin, Amra Adroviç, Kenan Barut, Sinem Durmuş, Hafize Uzun, Özgür Kasapçopur, Sezgin Şahin, Amra Adroviç, Kenan Barut, Nur Canpolat, Salim Çalışkan, Lale Sever, Özgür Kasapçopur, Tomomi Satō, Fuminori Kimura, Wafaa Suwairi, Reem Abdwani, Abdulaziz Al Rowais, Jubran Al qanatish, Abdulrahman Al Asiri, Kübra Öztürk, Zelal Ekinci, E. Gaidar, Mikhail M. Kostik, Margarita Dubko, Vera Masalova, E.D. Serogodskaya, Ludmila Snegireva, Т Н Никитина, Vyacheslav Chasnyk, Olga V. Kalashnikova, Evgenia Isupova, Elham Sardar, Perrine Dusser, Antoine Rousseau, Marc Labétoulle, Emanuel Barreau, Bahram Bodaghi, Isabelle Koné‐Paut, Ivan Foeldvari, Jordi Antón, Rosa Bou, Sheila T. Angeles‐Han, Regitze Bangsgaard, Gabriele Brumm, Tamás Constantin, Clive Edelsten, Jens Klotsche, Kirsten Minden, Elisabetta Miserocchi, Susan T. Nielsen, Gabriele Simonini, Arnd Heiligenhaus, Ivan Foeldvari, Jordi Antón, Rosa Bou, Sheila T. Angeles‐Han, Regitze Bangsgaard, Gabriele Brumm, Tamás Constantin, Clive Edelsten, Jens Klotsche, Kirsten Minden, Elisabetta Miserocchi, Susan Nielsen, Gabriele Simonini, Arnd Heiligenhaus, Ivan Foeldvari, Jordi Antón, Rosa Bou, Sheila T. Angeles‐Han, Regitze Bangsgaard, Gabriele Brumm, Tamás Constantin, Clive Edelsten, Jens Klotsche, Kirsten Minden, Elisabetta Miserocchi, Susan Nielsen, Gabriele Simonini, Arnd Heiligenhaus, Ivan Foeldvari, Jordi Antón, Rosa Bou, Sheila T. Angeles‐Han, Regitze Bangsgaard, Gabriele Brumm, Tamás Constantin, Clive Edelsten, Jens Klotsche, Kirsten Minden, Elisabetta Miserocchi, Susan Nielsen, Gabriele Simonini, Arnd Heiligenhaus, Juan Manuel Mosquera Angarita, Rosa Bou, Carmen García de Vicuña, M.V. Hernández, Alfredo Adán, Víctor Llorens, Rosa Alcobendas, Susana Noval, Juan Carlos López Robledillo, Isabel Campi Valls, Mari Carmen Pinedo, Alejandro Fonollosa, Jaime de Inocencio, Pilar Herreros de Tejada, Beatriz Navarro Bravo, Manuel Torribio, María Jesús García de Yébenes, Jordi Antón, Lorenza Maria Argolini, Irene Pontikaki, María Orietta Borghi, Laura Cesana, Elisabetta Miserocchi, Barbara Castiglioni, M. Gattinara, Pier Luigi Meroni, Pierre Quartier, Véronique Despert, Sylvaine Poignant, Amandine Baptiste, Caroline Elie, Isabelle Koné‐Paut, Alexandre Belot, Laurent Kodjikian, Dominique Monnet, Michel Weber, Bahram Bodaghi, Laura Moal, Antoine Rousseau, Luu-Ly Pham, Emmanuel Barreau, Chérif Titah, P. Dureau, Marc Labétoulle, Bahram Bodaghi, Séverine Guillaume Czitrom, Vanessa Cecchin, Maria Elisabetta Zannin, Daniele Ferrari, Francesco Comacchio, Irene Pontikaki, Claudia Bracaglia, Rolando Cimaz, Fabio Falcini, Antonella Petaccia, Stefania Viola, Luciana Breda, Francesco La Torre, Fabio Vittadello, Giorgia Martini, Francesco Zulian, Caroline Galeotti, Guillaume Sarrabay, O. Fogel, Isabelle Touitou, Bahram Bodaghi, Corinne Miceli‐Richard, Isabelle Koné‐Paut, Hala Etayari, Hashad Soad, Ihab El Kadry, Habibullah Eatamadi, Kais AlAlgawi, Mustafa Al Maini, Khulood Khawaja, Sophie Van den Berghe, I. De Schryver, Ann Raes, Rik Joos, Joke Dehoorne, Lídia L. C. Teixeira, Ana Catarina Duarte, Sandra Sousa, Filipe Vinagre, Maria José Santos, N. Shevchenko, Л Ф Богмат, Marina V. Demyanenko, Navdha R. Ramchurn, Mark Friswell, Rebecca James, Lucy Wedderburn, Clive Edelsten, Reshma Pattani, Clarissa Pilkington, Sandrine Compeyrot-Lacassagne, Rebecca James, Sandrine Compeyrot-Lacassagne, Clive Edelsten, Reshma Pattani, Clarissa Pilkington, Lucy Wedderburn, Ana Victoria Villarreal, Nydia Acevedo, Enrique Faugier, Rocío Maldonado, Dilek Yılmaz, Hilal Bektaş Uysal, Evgeny Fedorov, С. О. Салугина, Elena Kamenets, Ekaterina Zaharova, С Г Раденска-Лоповок, João Nascimento, Helena Sofia, Carla Zilhão, Rui Almeida, Margarida Guedes, Kübra Öztürk, Murat Devecí, Zelal Ekinci, Svetlana Rodionovskaya, Vera Vinnikova, С. О. Салугина, Evgeny Fedorov, Irina Tsymbal, Edyta Olesińska, Jacek Postępski, Agnieszka Mroczkowska-Juchkiewicz, Agnieszka Pawłowska-Kamieniak, Beata Chrapko, Damjana Ključevšek, Nina Emeršič, Nataša Toplak, Tadej Avčin, Faina Rokhlina, Galina Glazyrina, Natalia Kolyadina, Kwang Nam Kim, Sinae Eom, Dae-Young Kim, Jungwoo Rhim, Francesca Ricci, Paola Montesano, Barbara Bonafini, Veronica Medeghini, Ilaria Parissenti, Antonella Meini, Marco Cattalini, Paolo Airò, N.O. Panko, Н. В. Шевченко, Iryna Lebec, Yevgeniya Zajceva, Sara Rostlund, Marie André, Takuma Hara, Takayuki Kishi, Yumi Tani, Aki Hanaya, Takako Miyamae, Satoru Nagata, Hisashi Yamanaka, Velma Selmanović, Aida Omerčahić-Dizdarević, Adisa Čengić, Almira Ćosićkić, Aida Dizdarević, Gemma Lepri, Paolo Picco, Clara Malattia, E Bellucci, Marco Matucci‐Cerinic, Fabio Falcini, Margarita Dubko, Anton Solovyev, Elena P. Fedotova, Rocío Maldonado, Enrique Faugier, Ana Victoria Villarreal, Nydia Acevedo, Talia Diaz, Yuridiana Ramirez, Teresa Giani, Achille Marino, Gabriele Simonini, Rolando Cimaz, Daniel Hunt, Muthana Al Obaidi, Veli Veli, Charalampia Papadopoulou, Jochen Kammermeier, Edyta Olesińska, Anna Poluha, Jacek Postępski, Gangadhara C. Bharmappanavara, Alison Kelly, Lindsay Shaw, Teresa Giani, Giovanna Ferrara, Michèle Luzzati, Achille Marino, Mattia Giovannini, Gabriele Simonini, Rolando Cimaz, Liliana Jurado, Sebastián Giraldo, Juliana Chamorro, Lorena Sarmiento, Adriana S. Diaz, Veronica Medeghini, Francesca Ricci, Paola Montesano, Barbara Bonafini, Ilaria Parissenti, Antonella Meini, Ester Conversano, Marco Cattalini, Maria Francesca Gicchino, Giulia Macchini, Carmela Granato, Assunta Tirelli, Alma Nunzia Olivieri, Marija Perica, Lana Tambić Bukovac, Л Ф Богмат, N. Shevchenko, Marina V. Demyanenko, Reza Sinaei, Vadood Javadi Parvaneh, Reza Shiari, Khosro Rahmani, Fatemeh Fereshteh Mehregan, Mehrnoush Hassas Yeganeh, Inmaculada Calvo Penadés, Berta López Montesinos, Ma Isabel González Fernández, Adriana Rodríguez Vidal, Anand Prahalad Rao, Ayesha Romana, Jyothi Raghuram, Ankur Kumar, Deepti Suri, Vishali Gupta, Amit Rawat, Surjit Singh, Elif Çomak, Gülşah Kaya Aksoy, Aygen Yılmaz, Atike Atalay, Mustafa Koyun, Reha Artan, Sema Akman, Maria Francesca Gicchino, Giulia Macchini, Carmela Granato, Alma Nunzia Olivieri, М. И. Каледа, Irina Nikishina, Sergei K. Soloviev, Victor A. Malievsky, Е. В. Николаева, Teresa Giani, Achille Marino, Gabriele Simonini, Rolando Cimaz, Agnieszka Gazda, Beata Kołodziejczyk, Lidia Rutkowska-Sak, Angela Mauro, Teresa Giani, Gabriele Simonini, Rolando Cimaz, Maria Francesca Gicchino, Pierluigi Marzuillo, Stefano Guarino, Alma Nunzia Olivieri, Angela La Manna
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pcbi.1007022

DigChem: Identification of disease-gene-chemical relationships from Medline abstracts
Cited by: 10
Author(s): Jeong-Kyun Kim, Jung‐Jae Kim, Hyunju Lee
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0155530

Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database
Cited by: 23
Author(s): Allan Peter Davis, Thomas C. Wiegers, Benjamin L. King, Jolene Wiegers, Cynthia Grondin, Daniela Sciaky, Robin J. Johnson, Carolyn J. Mattingly
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0058201

Text Mining Effectively Scores and Ranks the Literature for Improving Chemical-Gene-Disease Curation at the Comparative Toxicogenomics Database
Cited by: 60
Author(s): Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson, Jean M. Lay, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Cynthia G. Murphy, Carolyn J. Mattingly
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0189720

Internal wave turbulence at a biologically rich Mid-Atlantic seamount
Cited by: 21
Author(s): Hans van Haren, Ulrike Hanz, Henko de Stigter, Furu Mienis, G.C.A. Duineveld
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0046524

Ranking Transitive Chemical-Disease Inferences Using Local Network Topology in the Comparative Toxicogenomics Database
Cited by: 43
Author(s): Benjamin L. King, Allan Peter Davis, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0200579

CTD: Fast, accurate, and interpretable method for static and dynamic tensor decompositions
Cited by: 8
Author(s): Jungwoo Lee, Dong-Jin Choi, Lee Sael
Software Mentions: 1
Published: over 6 years ago

10.1080/21623945.2021.1933297

Identification of core gene in obese type 2 diabetes patients using bioinformatics analysis
Cited by: 6
Author(s): Zhiyong Dong, Xinyi Lei, Stacy Kujawa, NaciEmre Bolu, Hong Zhao, Cunchuan Wang
Software Mentions: 1
Published: almost 4 years ago

10.1155/2021/8798003

Medical Image Fusion Based on Low-Level Features
Cited by: 4
Author(s): Yongxin Zhang, Chenrui Guo, Peng Zhao
Software Mentions: 1
Published: over 3 years ago

10.1016/j.crtox.2021.03.001

CTD anatomy: Analyzing chemical-induced phenotypes and exposures from an anatomical perspective, with implications for environmental health studies
Cited by: 26
Author(s): Allan Peter Davis, Thomas C. Wiegers, Jolene Wiegers, Cynthia Grondin, Robin J. Johnson, Daniela Sciaky, Carolyn J. Mattingly
Software Mentions: 1
Published: almost 4 years ago

10.1093/database/bat080

A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions
Cited by: 84
Author(s): Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin J. Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed Enayetallah, Carolyn J. Mattingly
Software Mentions: 1
Published: almost 11 years ago

10.1155/2020/6473745

Exploring Molecular Mechanism of Huangqi in Treating Heart Failure Using Network Pharmacology
Cited by: 20
Author(s): Yangu Tao, Xiufang Huang, Junyan Wang, Mengru Kang, Lingjun Wang, Shaoxiang Xian
Software Mentions: 1
Published: over 4 years ago

10.3389/fimmu.2021.707287

Identification of COVID-19 and Dengue Host Factor Interaction Networks Based on Integrative Bioinformatics Analyses
Cited by: 11
Author(s): Wenjiang Zheng, Hui Wu, Chengxin Liu, Qian Yan, Ting Wang, Peng Wu, Xiaohong Liu, Yong Jiang, Shaofeng Zhan
Software Mentions: 1
Published: over 3 years ago

10.1186/gb-2012-13-7-r62

CIDeR: multifactorial interaction networks in human diseases
Cited by: 29
Author(s): Martin Lechner, Veit Höhn, Barbara Brauner, Irmtraud Dunger, Gisela Fobo, Goar Frishman, Corinna Montrone, Gabi Kastenmüller, Brigitte Waegele, Andreas Ruepp
Software Mentions: 1
Published: almost 13 years ago

Projects: cran: CTD

Papers Mentioning CTD 44