Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008550

https://doi.org/10.1371/journal.pcbi.1008550

CTD: An information-theoretic algorithm to interpret sets of metabolomic and transcriptomic perturbations in the context of graphical models

Cited by: 9
Author(s): Lillian R Thistlethwaite, Varduhi Petrosyan, Xiqi Li, Marcus J. Miller, Sarah H. Elsea, Aleksandar Milosavljevic
Published: almost 4 years ago

Software Mentions 5

bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
cran: CTD
A Method for 'Connecting The Dots' in Weighted Graphs
Papers that mentioned: 44