cran: glasso | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006369

SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks
Cited by: 35
Author(s): Rong Zhang, Zhao Ren, Wei Chen
Software Mentions: 10
Published: over 6 years ago

10.3389/fpsyg.2019.02174

Expanding the Map of Intrinsic and Extrinsic Aspirations Using Network Analysis and Multidimensional Scaling: Examining Four New Aspirations
Cited by: 24
Author(s): Frank Martela, Emma L. Bradshaw, Richard M. Ryan
Software Mentions: 9
Published: about 5 years ago

10.1371/journal.pcbi.1004765

A Multi-Method Approach for Proteomic Network Inference in 11 Human Cancers
Cited by: 29
Author(s): Yasin Şenbabaoğlu, S. Onur Sumer, Francisco Sánchez-Vega, Debra L. Bemis, Giovanni Ciriello, Nikolaus Schultz, Chris Sander
Software Mentions: 7
Published: almost 9 years ago

10.3389/fpsyg.2019.02783

The Network Structure of Adolescent Well-Being Traits: Results From a Large-Scale Chinese Sample
Cited by: 8
Author(s): Guang Zeng, Kaiping Peng, Hu Chuan-Peng
Software Mentions: 7
Published: about 5 years ago

10.1017/S2045796019000222

Item and domain network structures of the Resilience Scale for Adults in 675 university students
Cited by: 18
Author(s): Giovanni Briganti, Paul Linkowski
Software Mentions: 7
Published: over 5 years ago

10.3758/s13428-017-0862-1

Estimating psychological networks and their accuracy: A tutorial paper
Cited by: 1,743
Author(s): Sacha Epskamp, Denny Borsboom, Eiko I. Fried
Software Mentions: 7
Published: almost 8 years ago

10.1093/bib/bbw102

A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles
Cited by: 1
Author(s): Felicia Ng, David Ruau, Lorenz Wernisch, Berthold Göttgens
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0106524

Discovering Study-Specific Gene Regulatory Networks
Cited by: 8
Author(s): V. Dal Bò, Tanya Y. Curtis, Artem Lysenko, Mansoor Saqi, Stephen Swift, Allan Tucker
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0060536

Iterative Reconstruction of High-Dimensional Gaussian Graphical Models Based on a New Method to Estimate Partial Correlations under Constraints
Cited by: 0
Author(s): Vincent Guillemot, Andreas Bender, Anne‐Laure Boulesteix
Software Mentions: 5
Published: over 11 years ago

10.1038/srep22932

Integrated mRNA and miRNA expression profiling in blood reveals candidate biomarkers associated with endurance exercise in the horse
Cited by: 44
Author(s): Núria Mach, Sandra Plancade, Alicja Pacholewska, Jérôme Lecardonnel, Julie Rivière, Marco Moroldo, Anne Vaiman, Caroline Morgenthaler, Marine Beinat, Alizée Nevot, Céline Robert, Éric Barrey
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0105942

Inference of Gene Regulatory Networks Incorporating Multi-Source Biological Knowledge via a State Space Model with L1 Regularization
Cited by: 18
Author(s): Takanori Hasegawa, Rui Yamaguchi, Masao Nagasaki, Satoru Miyano, Seiya Imoto
Software Mentions: 4
Published: over 10 years ago

10.1002/mpr.1810

Exploring network structure and central items of the Narcissistic Personality Inventory
Cited by: 9
Author(s): Giovanni Briganti, Paul Linkowski
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-016-1136-0

Consistency of biological networks inferred from microarray and sequencing data
Cited by: 4
Author(s): Veronica Vinciotti, Ernst Wit, Ritsert C. Jansen, Eco J. C. de Geus, Brenda W. J. H. Penninx, Dorret I. Boomsma, Peter A C ‘t Hoen
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0251272

Survival prediction based on the gene expression associated with cancer morphology and microenvironment in primary central nervous system lymphoma
Cited by: 4
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Junya Fukai, Yasuo Iwadate, Koji Kajiwara, Hiroaki Hondoh
Software Mentions: 4
Published: over 3 years ago

10.3389/fneur.2020.00175

Architecture of Physical, Cognitive, and Emotional Symptoms at Preseason Baseline in Adolescent Student Athletes With a History of Mental Health Problems
Cited by: 10
Author(s): Grant L. Iverson, Payton J. Jones, Justin E Karr, Bruce Maxwell, Ross Zafonte, Paul D. Berkner, Richard J. McNally
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-016-1309-x

On the inconsistency of ℓ 1-penalised sparse precision matrix estimation
Cited by: 7
Author(s): Otte Heinävaara, Janne Leppä-aho, Jukka Corander, Antti Honkela
Software Mentions: 3
Published: about 8 years ago

10.1038/s41598-019-46473-5

Differential expression of individual transcript variants of PD-1 and PD-L2 genes on Th-1/Th-2 status is guaranteed for prognosis prediction in PCNSL
Cited by: 22
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Ryuichi Sato, Kenichi Yoshida, Azusa Hayano, Jumpei Homma, Junya Fukai, Yasuo Iwadate, Koji Kajiwara, Shin Ishizawa, Hiroaki Hondoh, Masakazu Nakano, Seishi Ogawa, Kei Tashiro
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pcbi.1005160

Markov Networks of Collateral Resistance: National Antimicrobial Resistance Monitoring System Surveillance Results from Escherichia coli Isolates, 2004-2012
Cited by: 16
Author(s): William J. Love, Kelson Zawack, James G. Booth, Yrjo T. Gröhn, Cristina Lanzas
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0148171

Use of Wishart Prior and Simple Extensions for Sparse Precision Matrix Estimation
Cited by: 16
Author(s): Markku Kuismin, Mikko J. Sillanpää
Software Mentions: 3
Published: almost 9 years ago

10.1186/1471-2164-16-S10-S7

Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data
Cited by: 7
Author(s): Panagiotis Papasaikas, Arvind Rao, Peter Huggins, Juan Valcárcel, A. Javier Lopez
Software Mentions: 3
Published: about 9 years ago

10.3390/cells8111312

Promising Prognosis Marker Candidates on the Status of Epithelial–Mesenchymal Transition and Glioma Stem Cells in Glioblastoma
Cited by: 23
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Ryuya Yamanaka
Software Mentions: 3
Published: about 5 years ago

10.1080/20008198.2017.1341276

A Bayesian network analysis of posttraumatic stress disorder symptoms in adults reporting childhood sexual abuse
Cited by: 120
Author(s): Richard J. McNally, Alexandre Heeren, Donald J. Robinaugh
Software Mentions: 3
Published: over 7 years ago

10.1002/fes3.126

Construction of a network describing asparagine metabolism in plants and its application to the identification of genes affecting asparagine metabolism in wheat under drought and nutritional stress
Cited by: 44
Author(s): Tanya Y. Curtis, V. Dal Bò, Allan Tucker, Nigel G. Halford
Software Mentions: 3
Published: almost 7 years ago

10.1038/s41598-020-77108-9

The influence of networks of general trust on willingness to communicate in English for Japanese people
Cited by: 4
Author(s): Takehiko Ito
Software Mentions: 3
Published: about 4 years ago

10.1186/s12966-021-01172-1

Using food network analysis to understand meal patterns in pregnant women with high and low diet quality
Cited by: 2
Author(s): Carolina Schwedhelm, Leah M. Lipsky, Grace E. Shearrer, Grace Betts, Aiyi Liu, Khalid Iqbal, Myles S. Faith, Tonja R. Nansel
Software Mentions: 3
Published: over 3 years ago

10.1534/g3.115.018127

Gene Network Reconstruction by Integration of Prior Biological Knowledge
Cited by: 39
Author(s): Yupeng Li, Scott A. Jackson
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0216825

CD276 and the gene signature composed of GATA3 and LGALS3 enable prognosis prediction of glioblastoma multiforme
Cited by: 16
Author(s): Yasuo Takashima, Atsushı Kawaguchi, Azusa Hayano
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0246945

A mixture model to detect edges in sparse co-expression graphs with an application for comparing breast cancer subtypes
Cited by: 1
Author(s): Haim Bar, Seojin Bang
Software Mentions: 2
Published: almost 4 years ago

10.3389/fpsyg.2020.566785

Understanding the Relationship Between Complicated Grief Symptoms and Patterns of Personality Disorders in a Substance Users’ Sample: A Network Analysis Approach
Cited by: 6
Author(s): Laura Masferrer, Anthony D. Mancini, Beatriz Caparrós
Software Mentions: 2
Published: about 4 years ago

10.1186/s13040-017-0140-x

Computational dynamic approaches for temporal omics data with applications to systems medicine
Cited by: 22
Author(s): Yong Liang, Arpad Kelemen
Software Mentions: 2
Published: over 7 years ago

10.3389/fpsyg.2021.580448

The Influence of Socio-Ecological Networks on Willingness to Communicate in English for Japanese People
Cited by: 0
Author(s): Takehiko Ito
Software Mentions: 2
Published: over 3 years ago

10.1038/s41398-020-01175-9

A cortical immune network map identifies distinct microglial transcriptional programs associated with β-amyloid and Tau pathologies
Cited by: 16
Author(s): Ellis Patrick, Marta Olah, Mariko Taga, Hans-Ulrich Klein, Jishu Xu, Charles C. White, Daniel Felsky, Shweta Agrawal, Chris Gaiteri, Lori B. Chibnik, Sara Mostafavi, Julie A. Schneider, David A. Bennett, Elizabeth M. Bradshaw, Philip L. De Jager
Software Mentions: 2
Published: almost 4 years ago

10.3390/nu13082692

Effect of the Interaction between Dietary Patterns and the Gastric Microbiome on the Risk of Gastric Cancer
Cited by: 8
Author(s): Madhawa Gunathilake, Jeonghee Lee, Il Ju Choi, Young Il Kim, Jeongseon Kim
Software Mentions: 1
Published: over 3 years ago

10.1186/1471-2105-14-S1-S10

Prediction of disulfide connectivity in proteins with machine-learning methods and correlated mutations
Cited by: 13
Author(s): Castrense Savojardo, Piero Fariselli, Pier Luigi Martelli, Rita Casadio
Software Mentions: 1
Published: almost 12 years ago

10.3390/metabo11040228

Plasma Metabolome and Lipidome Associations with Type 2 Diabetes and Diabetic Nephropathy
Cited by: 14
Author(s): Yan Ming Tan, Yan Gao, Guoshou Teo, Hiromi W. L. Koh, E Shyong Tai, Chin Meng Khoo, Kwok Pui Choi, Lanlan Zhou, Hyungwon Choi
Software Mentions: 1
Published: over 3 years ago

Projects: cran: glasso

Papers Mentioning glasso 39