cran: elastic | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1007665

CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological data
Cited by: 8
Author(s): Thilde Terkelsen, Anders Krogh, Elena Papaleo
Software Mentions: 11
Published: over 4 years ago

10.1038/s41598-018-33986-8

Identification of Novel Genes in Human Airway Epithelial Cells associated with Chronic Obstructive Pulmonary Disease (COPD) using Machine-Based Learning Algorithms
Cited by: 24
Author(s): Shayan Mostafaei, Anoshirvan Kazemnejad, Sadegh Azimzadeh Jamalkandi, Soroush Amirhashchi, Seamas C. Donnelly, Michelle E. Armstrong, Mohammad Doroudian
Software Mentions: 11
Published: about 6 years ago

10.1186/s12940-017-0310-9

Construction of environmental risk score beyond standard linear models using machine learning methods: application to metal mixtures, oxidative stress and cardiovascular disease in NHANES
Cited by: 73
Author(s): Sung Kyun Park, Zhangchen Zhao, Bhramar Mukherjee
Software Mentions: 9
Published: about 7 years ago

10.1371/journal.pone.0107957

Simulation Studies as Designed Experiments: The Comparison of Penalized Regression Models in the “Large p, Small n” Setting
Cited by: 13
Author(s): Elias Chaibub Neto, J. Christopher Bare, Adam A. Margolin
Software Mentions: 8
Published: about 10 years ago

10.1371/journal.pone.0242730

A comparison of penalised regression methods for informing the selection of predictive markers
Cited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: about 4 years ago

10.1371/journal.pone.0185380

Recapitulation of Ayurveda constitution types by machine learning of phenotypic traits
Cited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0137222

Discovery of Intermediary Genes between Pathways Using Sparse Regression
Cited by: 1
Author(s): Kuo-ching Liang, Ashwini Patil, Kenta Nakai
Software Mentions: 7
Published: about 9 years ago

10.1155/2015/670691

Statistical Methods for Establishing Personalized Treatment Rules in Oncology
Cited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13073-015-0226-3

The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associations
Cited by: 70
Author(s): HoJoon Lee, Jennifer Palm, Susan M. Grimes, Hanlee P. Ji
Software Mentions: 6
Published: about 9 years ago

10.1186/1471-2105-12-S13-S17

Stability of building gene regulatory networks with sparse autoregressive models
Cited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: almost 13 years ago

10.1007/s00180-016-0690-2

On the impact of model selection on predictor identification and parameter inference
Cited by: 6
Author(s): Ruth M. Pfeiffer, Andrew Redd, Raymond J. Carroll
Software Mentions: 5
Published: about 8 years ago

10.1371/journal.pone.0237006

RNAAgeCalc: A multi-tissue transcriptional age calculator
Cited by: 31
Author(s): Ruwei Xu, Pei Fen Kuan
Software Mentions: 5
Published: over 4 years ago

10.7717/peerj.6046

In silico engineering of<i>Pseudomonas</i>metabolism reveals new biomarkers for increased biosurfactant production
Cited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-018-2401-1

Data integration by multi-tuning parameter elastic net regression
Cited by: 23
Author(s): Jie Liu, Gangning Liang, Kimberly D. Siegmund, Juan Pablo Lewinger
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-019-2994-z

An elastic-net logistic regression approach to generate classifiers and gene signatures for types of immune cells and T helper cell subsets
Cited by: 29
Author(s): Arezo Torang, Paraag Gupta, David J. Klinke
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-15-300

Visual gene-network analysis reveals the cancer gene co-expression in human endometrial cancer
Cited by: 81
Author(s): Wei-Chun Chou, An‐Lin Cheng, Marco Brotto, Chun‐Yu Chuang
Software Mentions: 4
Published: over 10 years ago

10.1155/2015/605891

Evaluation of Penalized and Nonpenalized Methods for Disease Prediction with Large-Scale Genetic Data
Cited by: 2
Author(s): Sungho Won, Ho Sun Choi, Suyeon Park, Juyoung Lee, Changyi Park, Sunghoon Kwon
Software Mentions: 4
Published: almost 10 years ago

10.1371/journal.pone.0106131

Gene Expression Profiling Reveals Epithelial Mesenchymal Transition (EMT) Genes Can Selectively Differentiate Eribulin Sensitive Breast Cancer Cells
Cited by: 47
Author(s): Zoltán Dezső, Judith Oestreicher, Amy Weaver, Stephanie Santiago, Sergei Agoulnik, Jesse C. Chow, Yoshiya Oda, Yasuhiro Funahashi
Software Mentions: 4
Published: about 10 years ago

10.3389/fnagi.2021.652575

Midlife Cardiovascular Fitness Is Reflected in the Brain's White Matter
Cited by: 2
Author(s): Tracy d’Arbeloff, M. Elliott, Annchen R. Knodt, Maria L. Sison, Tracy R. Melzer, David Ireland, Sandhya Ramrakha, Richie Poulton, Terrie E. Moffitt, Ahmad R. Hariri
Software Mentions: 4
Published: over 3 years ago

10.29252/.22.6.374

Application of Sparse Linear Discriminant Analysis and Elastic Net for Diagnosis of IgA Nephropathy: Statistical and Biological Viewpoints
Cited by: 6
Author(s): Tahereh Mohammadi Majd, Shiva Kalantari, Hadi Raeisi Shahraki, Mohsen Nafar, Afshin Almasi, Shiva Samavat, Mahmoud Parvin, Amir Hossein Hashemian
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0127380

A Network Flow-Based Method to Predict Anticancer Drug Sensitivity
Cited by: 7
Author(s): Yufang Qin, Ming Chen, Haiyun Wang, Xiaoqi Zheng
Software Mentions: 3
Published: over 9 years ago

10.3390/brainsci10120949

A Review of Machine Learning Methods of Feature Selection and Classification for Autism Spectrum Disorder
Cited by: 54
Author(s): Md. Mokhlesur Rahman, Opeyemi Lateef Usman, Ravie Chandren Muniyandi, Shahnorbanun Sahran, Suziyani Mohamed, Rogayah A. Razak
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.3834

Wrong, but useful: regional species distribution models may not be improved by range‐wide data under biased sampling
Cited by: 53
Author(s): Ahmed El‐Gabbas, Carsten F. Dormann
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pgen.1003396

Robust Prediction of Expression Differences among Human Individuals Using Only Genotype Information
Cited by: 33
Author(s): Ohad Manor, Eran Segal
Software Mentions: 3
Published: over 11 years ago

10.1186/s13059-016-1063-4

Prediction of gestational age based on genome-wide differentially methylated regions
Cited by: 122
Author(s): Jon Bohlin, Siri Eldevik Håberg, Per Magnus, Sarah E. Reese, Håkon K. Gjessing, Maria C Magnus, Christine Louise Parr, Christian M. Page, Stephanie J. London, Wenche Nystad
Software Mentions: 3
Published: about 8 years ago

10.1186/s13059-019-1640-4

I-Boost: an integrative boosting approach for predicting survival time with multiple genomics platforms
Cited by: 7
Author(s): Kin Yau Wong, Cheng Fan, Miki Tanioka, Joel S. Parker, Andrew B. Nobel, Donglin Zeng, Dan Lin, Charles M. Perou
Software Mentions: 2
Published: over 5 years ago

10.1186/1755-8794-6-54

Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasis
Cited by: 36
Author(s): HoJoon Lee, Patrick Flaherty, Hanlee P. Ji
Software Mentions: 2
Published: almost 11 years ago

10.1002/acm2.13252

Monte Carlo study of TG‐43 dosimetry parameters of GammaMed Plus high dose rate <sup>192</sup> Ir brachytherapy source using TOPAS
Cited by: 5
Author(s): Jianan Wu, Yaoqin Xie, Zhen Ding, Feipeng Li, Lühua Wang
Software Mentions: 2
Published: over 3 years ago

10.1186/s12863-017-0495-5

Network-based regularization for high dimensional SNP data in the case–control study of Type 2 diabetes
Cited by: 18
Author(s): Jie Ren, Tao He, Ye Li, Sai Liu, Yinhao Du, Yu Jiang, Cen Wu
Software Mentions: 2
Published: over 7 years ago

10.1038/s41598-020-63975-9

First proton minibeam radiation therapy treatment plan evaluation
Cited by: 26
Author(s): P. Lansonneur, Hamid Mammar, C. Nauraye, Annalisa Patriarca, E. Hierso, R. Dendale, Yolanda Prezado, Ludovic De Marzi
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.20239

Hypoxia-related biological markers as predictors of epirubicin-based treatment responsiveness and resistance in locally advanced breast cancer
Cited by: 5
Author(s): Manuela Milani, Sergio Venturini, S Bonardi, Giovanni Allevi, Carla Strina, Maria Rosa Cappelletti, Silvia Paola Corona, Sergio Aguggini, Alberto Bottini, Alfredo Berruti, Adrian M. Jubb, Leticia Campo, Adrian L. Harris, Kevin C. Gatter, Stephen B. Fox, Daniele Generali, Giandomenico Roviello
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0229507

Electromyographic activity in deadlift exercise and its variants. A systematic review
Cited by: 22
Author(s): Isabel Martín-Fuentes, José M. Oliva-Lozano, José M. Muyor
Software Mentions: 2
Published: over 4 years ago

10.1186/s40425-017-0223-8

Systematic evaluation of immune regulation and modulation
Cited by: 19
Author(s): David F. Stroncek, Lisa H. Butterfield, Michael A. Cannarile, Madhav V. Dhodapkar, Tim F. Greten, Jean‐Charles Grivel, David R. Kaufman, Heidi H. Kong, Firouzeh Korangy, Peter P. Lee, Francesco M. Marincola, Sergio Rutella, Janet Siebert, Giorgio Trinchieri, Barbara Seliger
Software Mentions: 2
Published: over 7 years ago

10.3390/metabo10050194

A Metabolomic Approach for Predicting Diurnal Changes in Cortisol
Cited by: 6
Author(s): Jarrett Eshima, Thomas J. Davis, Heather D. Bean, John Fricks, Barbara Smith
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0133850

Context Sensitive Modeling of Cancer Drug Sensitivity
Cited by: 13
Author(s): Bo-Juen Chen, Oren Litvin, Lyle H. Ungar, Dana Pe’er
Software Mentions: 2
Published: over 9 years ago

10.1155/2021/6668510

To Explore MR Imaging Radiomics for the Differentiation of Orbital Lymphoma and IgG4-Related Ophthalmic Disease
Cited by: 6
Author(s): Ye Yuan, Guangyu Chu, Ting-Ting Gong, Lianze Du, Lizhi Xie, Qinghai Yuan, Qing Han
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms18020453

Bioinformatics Approaches for Fetal DNA Fraction Estimation in Noninvasive Prenatal Testing
Cited by: 54
Author(s): Xianlu L. Peng, Peiyong Jiang
Software Mentions: 2
Published: almost 8 years ago

10.3389/fonc.2021.722703

The Advance of Magnetic Resonance Elastography in Tumor Diagnosis
Cited by: 6
Author(s): Jinying Yang, Bensheng Qiu
Software Mentions: 2
Published: about 3 years ago

Projects: cran: elastic

Papers Mentioning elastic 38