Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: elastic
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/elastic
General Purpose Interface to 'Elasticsearch'
14 versions
Latest release: over 3 years ago
3 dependent packages
684 downloads last month
Papers Mentioning elastic 38
10.1371/journal.pcbi.1007665
CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological dataCited by: 8
Author(s): Thilde Terkelsen, Anders Krogh, Elena Papaleo
Software Mentions: 11
Published: over 4 years ago
10.1038/s41598-018-33986-8
Identification of Novel Genes in Human Airway Epithelial Cells associated with Chronic Obstructive Pulmonary Disease (COPD) using Machine-Based Learning AlgorithmsCited by: 24
Author(s): Shayan Mostafaei, Anoshirvan Kazemnejad, Sadegh Azimzadeh Jamalkandi, Soroush Amirhashchi, Seamas C. Donnelly, Michelle E. Armstrong, Mohammad Doroudian
Software Mentions: 11
Published: almost 6 years ago
10.1186/s12940-017-0310-9
Construction of environmental risk score beyond standard linear models using machine learning methods: application to metal mixtures, oxidative stress and cardiovascular disease in NHANESCited by: 73
Author(s): Sung Kyun Park, Zhangchen Zhao, Bhramar Mukherjee
Software Mentions: 9
Published: almost 7 years ago
10.1371/journal.pone.0107957
Simulation Studies as Designed Experiments: The Comparison of Penalized Regression Models in the “Large p, Small n” SettingCited by: 13
Author(s): Elias Chaibub Neto, J. Christopher Bare, Adam A. Margolin
Software Mentions: 8
Published: almost 10 years ago
10.1371/journal.pone.0242730
A comparison of penalised regression methods for informing the selection of predictive markersCited by: 14
Author(s): Christopher J Greenwood, George J. Youssef, Primrose Letcher, Jacqui A. Macdonald, Lauryn Hagg, Ann Sanson, Jennifer McIntosh, Delyse Hutchinson, John W. Toumbourou, Matthew Fuller‐Tyszkiewicz, Craig A. Olsson
Software Mentions: 8
Published: almost 4 years ago
10.1371/journal.pone.0185380
Recapitulation of Ayurveda constitution types by machine learning of phenotypic traitsCited by: 24
Author(s): Prabhat Tiwari, Rintu Kutum, Tavpritesh Sethi, Ankita Shrivastava, Bhushan Girase, Shilpi Aggarwal, Rutuja Patil, Dhiraj Agarwal, Pramod Gautam, Anurag Agrawal, Debasis Dash, Saurabh Ghosh, Sanjay Juvekar, Mitali Mukerji, Bhavana Prasher
Software Mentions: 7
Published: almost 7 years ago
10.1371/journal.pone.0137222
Discovery of Intermediary Genes between Pathways Using Sparse RegressionCited by: 1
Author(s): Kuo-ching Liang, Ashwini Patil, Kenta Nakai
Software Mentions: 7
Published: about 9 years ago
10.1155/2015/670691
Statistical Methods for Establishing Personalized Treatment Rules in OncologyCited by: 16
Author(s): Junsheng Ma, Brian P. Hobbs, Francesco C. Stingo
Software Mentions: 6
Published: over 9 years ago
10.1186/s13073-015-0226-3
The Cancer Genome Atlas Clinical Explorer: a web and mobile interface for identifying clinical–genomic driver associationsCited by: 70
Author(s): HoJoon Lee, Jennifer Palm, Susan M. Grimes, Hanlee P. Ji
Software Mentions: 6
Published: almost 9 years ago
10.1186/1471-2105-12-S13-S17
Stability of building gene regulatory networks with sparse autoregressive modelsCited by: 20
Author(s): Jagath C. Rajapakse, Piyushkumar A. Mundra
Software Mentions: 5
Published: almost 13 years ago
10.1007/s00180-016-0690-2
On the impact of model selection on predictor identification and parameter inferenceCited by: 6
Author(s): Ruth M. Pfeiffer, Andrew Redd, Raymond J. Carroll
Software Mentions: 5
Published: almost 8 years ago
10.1371/journal.pone.0237006
RNAAgeCalc: A multi-tissue transcriptional age calculatorCited by: 31
Author(s): Ruwei Xu, Pei Fen Kuan
Software Mentions: 5
Published: about 4 years ago
10.7717/peerj.6046
In silico engineering of<i>Pseudomonas</i>metabolism reveals new biomarkers for increased biosurfactant productionCited by: 16
Author(s): Annalisa Occhipinti, Filmon Eyassu, Thahira Rahman, Pattanathu Rahman, Claudio Angione
Software Mentions: 5
Published: over 5 years ago
10.1186/s12859-018-2401-1
Data integration by multi-tuning parameter elastic net regressionCited by: 23
Author(s): Jie Liu, Gangning Liang, Kimberly D. Siegmund, Juan Pablo Lewinger
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12859-019-2994-z
An elastic-net logistic regression approach to generate classifiers and gene signatures for types of immune cells and T helper cell subsetsCited by: 29
Author(s): Arezo Torang, Paraag Gupta, David J. Klinke
Software Mentions: 4
Published: about 5 years ago
10.1186/1471-2164-15-300
Visual gene-network analysis reveals the cancer gene co-expression in human endometrial cancerCited by: 81
Author(s): Wei-Chun Chou, An‐Lin Cheng, Marco Brotto, Chun‐Yu Chuang
Software Mentions: 4
Published: over 10 years ago
10.1155/2015/605891
Evaluation of Penalized and Nonpenalized Methods for Disease Prediction with Large-Scale Genetic DataCited by: 2
Author(s): Sungho Won, Ho Sun Choi, Suyeon Park, Juyoung Lee, Changyi Park, Sunghoon Kwon
Software Mentions: 4
Published: over 9 years ago
10.1371/journal.pone.0106131
Gene Expression Profiling Reveals Epithelial Mesenchymal Transition (EMT) Genes Can Selectively Differentiate Eribulin Sensitive Breast Cancer CellsCited by: 47
Author(s): Zoltán Dezső, Judith Oestreicher, Amy Weaver, Stephanie Santiago, Sergei Agoulnik, Jesse C. Chow, Yoshiya Oda, Yasuhiro Funahashi
Software Mentions: 4
Published: about 10 years ago
10.3389/fnagi.2021.652575
Midlife Cardiovascular Fitness Is Reflected in the Brain's White MatterCited by: 2
Author(s): Tracy d’Arbeloff, M. Elliott, Annchen R. Knodt, Maria L. Sison, Tracy R. Melzer, David Ireland, Sandhya Ramrakha, Richie Poulton, Terrie E. Moffitt, Ahmad R. Hariri
Software Mentions: 4
Published: over 3 years ago
10.29252/.22.6.374
Application of Sparse Linear Discriminant Analysis and Elastic Net for Diagnosis of IgA Nephropathy: Statistical and Biological ViewpointsCited by: 6
Author(s): Tahereh Mohammadi Majd, Shiva Kalantari, Hadi Raeisi Shahraki, Mohsen Nafar, Afshin Almasi, Shiva Samavat, Mahmoud Parvin, Amir Hossein Hashemian
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pone.0127380
A Network Flow-Based Method to Predict Anticancer Drug SensitivityCited by: 7
Author(s): Yufang Qin, Ming Chen, Haiyun Wang, Xiaoqi Zheng
Software Mentions: 3
Published: over 9 years ago
10.3390/brainsci10120949
A Review of Machine Learning Methods of Feature Selection and Classification for Autism Spectrum DisorderCited by: 54
Author(s): Md. Mokhlesur Rahman, Opeyemi Lateef Usman, Ravie Chandren Muniyandi, Shahnorbanun Sahran, Suziyani Mohamed, Rogayah A. Razak
Software Mentions: 3
Published: almost 4 years ago
10.1002/ece3.3834
Wrong, but useful: regional species distribution models may not be improved by range‐wide data under biased samplingCited by: 53
Author(s): Ahmed El‐Gabbas, Carsten F. Dormann
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pgen.1003396
Robust Prediction of Expression Differences among Human Individuals Using Only Genotype InformationCited by: 33
Author(s): Ohad Manor, Eran Segal
Software Mentions: 3
Published: over 11 years ago
10.1186/s13059-016-1063-4
Prediction of gestational age based on genome-wide differentially methylated regionsCited by: 122
Author(s): Jon Bohlin, Siri Eldevik Håberg, Per Magnus, Sarah E. Reese, Håkon K. Gjessing, Maria C Magnus, Christine Louise Parr, Christian M. Page, Stephanie J. London, Wenche Nystad
Software Mentions: 3
Published: almost 8 years ago
10.1186/s13059-019-1640-4
I-Boost: an integrative boosting approach for predicting survival time with multiple genomics platformsCited by: 7
Author(s): Kin Yau Wong, Cheng Fan, Miki Tanioka, Joel S. Parker, Andrew B. Nobel, Donglin Zeng, Dan Lin, Charles M. Perou
Software Mentions: 2
Published: over 5 years ago
10.1186/1755-8794-6-54
Systematic genomic identification of colorectal cancer genes delineating advanced from early clinical stage and metastasisCited by: 36
Author(s): HoJoon Lee, Patrick Flaherty, Hanlee P. Ji
Software Mentions: 2
Published: almost 11 years ago
10.1002/acm2.13252
Monte Carlo study of TG‐43 dosimetry parameters of GammaMed Plus high dose rate <sup>192</sup> Ir brachytherapy source using TOPASCited by: 5
Author(s): Jianan Wu, Yaoqin Xie, Zhen Ding, Feipeng Li, Lühua Wang
Software Mentions: 2
Published: over 3 years ago
10.1186/s12863-017-0495-5
Network-based regularization for high dimensional SNP data in the case–control study of Type 2 diabetesCited by: 18
Author(s): Jie Ren, Tao He, Ye Li, Sai Liu, Yinhao Du, Yu Jiang, Cen Wu
Software Mentions: 2
Published: over 7 years ago
10.1038/s41598-020-63975-9
First proton minibeam radiation therapy treatment plan evaluationCited by: 26
Author(s): P. Lansonneur, Hamid Mammar, C. Nauraye, Annalisa Patriarca, E. Hierso, R. Dendale, Yolanda Prezado, Ludovic De Marzi
Software Mentions: 2
Published: over 4 years ago
10.18632/oncotarget.20239
Hypoxia-related biological markers as predictors of epirubicin-based treatment responsiveness and resistance in locally advanced breast cancerCited by: 5
Author(s): Manuela Milani, Sergio Venturini, S Bonardi, Giovanni Allevi, Carla Strina, Maria Rosa Cappelletti, Silvia Paola Corona, Sergio Aguggini, Alberto Bottini, Alfredo Berruti, Adrian M. Jubb, Leticia Campo, Adrian L. Harris, Kevin C. Gatter, Stephen B. Fox, Daniele Generali, Giandomenico Roviello
Software Mentions: 2
Published: about 7 years ago
10.1371/journal.pone.0229507
Electromyographic activity in deadlift exercise and its variants. A systematic reviewCited by: 22
Author(s): Isabel Martín-Fuentes, José M. Oliva-Lozano, José M. Muyor
Software Mentions: 2
Published: over 4 years ago
10.1186/s40425-017-0223-8
Systematic evaluation of immune regulation and modulationCited by: 19
Author(s): David F. Stroncek, Lisa H. Butterfield, Michael A. Cannarile, Madhav V. Dhodapkar, Tim F. Greten, Jean‐Charles Grivel, David R. Kaufman, Heidi H. Kong, Firouzeh Korangy, Peter P. Lee, Francesco M. Marincola, Sergio Rutella, Janet Siebert, Giorgio Trinchieri, Barbara Seliger
Software Mentions: 2
Published: over 7 years ago
10.3390/metabo10050194
A Metabolomic Approach for Predicting Diurnal Changes in CortisolCited by: 6
Author(s): Jarrett Eshima, Thomas J. Davis, Heather D. Bean, John Fricks, Barbara Smith
Software Mentions: 2
Published: over 4 years ago
10.1371/journal.pone.0133850
Context Sensitive Modeling of Cancer Drug SensitivityCited by: 13
Author(s): Bo-Juen Chen, Oren Litvin, Lyle H. Ungar, Dana Pe’er
Software Mentions: 2
Published: about 9 years ago
10.1155/2021/6668510
To Explore MR Imaging Radiomics for the Differentiation of Orbital Lymphoma and IgG4-Related Ophthalmic DiseaseCited by: 6
Author(s): Ye Yuan, Guangyu Chu, Ting-Ting Gong, Lianze Du, Lizhi Xie, Qinghai Yuan, Qing Han
Software Mentions: 2
Published: over 3 years ago
10.3390/ijms18020453
Bioinformatics Approaches for Fetal DNA Fraction Estimation in Noninvasive Prenatal TestingCited by: 54
Author(s): Xianlu L. Peng, Peiyong Jiang
Software Mentions: 2
Published: over 7 years ago
10.3389/fonc.2021.722703
The Advance of Magnetic Resonance Elastography in Tumor DiagnosisCited by: 6
Author(s): Jinying Yang, Bensheng Qiu
Software Mentions: 2
Published: about 3 years ago