cran: MCMCpack | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1006242

Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: over 6 years ago

10.3389/fpsyg.2019.01507

A Primer to (Cross-Cultural) Multi-Group Invariance Testing Possibilities in R
Cited by: 147
Author(s): Ronald Fischer, Johannes Alfons Karl
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0205076

Non-significant p-values? Strategies to understand and better determine the importance of effects and interactions in logistic regression
Cited by: 25
Author(s): Zarina I. Vakhitova, Clair Alston-Knox
Software Mentions: 7
Published: almost 6 years ago

10.1155/2019/8418760

Integrative Deep Learning for Identifying Differentially Expressed (DE) Biomarkers
Cited by: 8
Author(s): Jayeon Lim, SoYoun Bang, Jiyeon Kim, Cheolyong Park, JunSang Cho, Sunghwan Kim
Software Mentions: 7
Published: about 5 years ago

10.1002/ece3.6802

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
Cited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: almost 4 years ago

10.1093/molbev/msy147

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
Cited by: 246
Author(s): Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang
Software Mentions: 6
Published: over 6 years ago

10.1038/srep09066

Hardy-Weinberg equilibrium revisited for inferences on genotypes featuring allele and copy-number variations
Cited by: 3
Author(s): Andreas Recke, Klaus-Günther Recke, Saleh M. Ibrahim, Steffen Möller, Reinhard Vonthein
Software Mentions: 5
Published: over 9 years ago

10.1186/s12874-018-0531-9

Meta-analysis of binary outcomes via generalized linear mixed models: a simulation study
Cited by: 31
Author(s): Ilyas Bakbergenuly, Elena Kulinskaya
Software Mentions: 5
Published: over 6 years ago

10.1186/s12874-020-01135-3

A Bayesian natural cubic B-spline varying coefficient method for non-ignorable dropout
Cited by: 0
Author(s): Camille M. Moore, Samantha MaWhinney, Nichole E. Carlson, Sarah M. Kreidler
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0091414

Where Wolves Kill Moose: The Influence of Prey Life History Dynamics on the Landscape Ecology of Predation
Cited by: 24
Author(s): Robert A. Montgomery, John A. Vucetich, Gary J. Roloff, Joseph K. Bump, Rolf O. Peterson
Software Mentions: 4
Published: over 10 years ago

10.1002/ece3.6053

One size does not fit all: Customizing MCMC methods for hierarchical models using NIMBLE
Cited by: 14
Author(s): Lauren C. Ponisio, Perry de Valpine, Nicholas Michaud, Daniel Turek
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-020-75225-z

Sequential laxative-probiotic usage for treatment of irritable bowel syndrome: a novel method inspired by mathematical modelling of the microbiome
Cited by: 3
Author(s): Ming Li, Ri Xu, Yanqing Li
Software Mentions: 4
Published: about 4 years ago

10.3390/ijerph16050746

Comparison of Frequentist and Bayesian Generalized Additive Models for Assessing the Association Between Daily Exposure to Fine Particles and Respiratory Mortality: A Simulation Study
Cited by: 8
Author(s): Xin Fang, Bo Fang, Chunfang Wang, Tian Xia, Matteo Bottai, Fang Fang, Yang Cao
Software Mentions: 4
Published: over 5 years ago

10.3389/fpsyg.2016.01941

What Makes for the Most Intense Regrets? Comparing the Effects of Several Theoretical Predictors of Regret Intensity
Cited by: 10
Author(s): Andy Towers, Matt Williams, Stephen Hill, Michael C. Philipp, Ross Flett
Software Mentions: 3
Published: almost 8 years ago

10.1590/1678-4685-GMB-2015-0126

Linkage disequilibrium, SNP frequency change due to selection, and association mapping in popcorn chromosome regions containing QTLs for quality traits
Cited by: 7
Author(s): Geísa Pinheiro Paes, José Marcelo Soriano Viana, Fabyano Fonseca e Silva, Gabriel Borges Mundim
Software Mentions: 3
Published: over 8 years ago

10.1038/srep16073

Life history and dynamics of a platypus (Ornithorhynchus anatinus) population: four decades of mark-recapture surveys
Cited by: 18
Author(s): Gilad Bino, Tom Grant, Richard T. Kingsford
Software Mentions: 3
Published: about 9 years ago

10.1186/s40064-016-2722-3

Reliability analysis using an exponential power model with bathtub-shaped failure rate function: a Bayes study
Cited by: 1
Author(s): Romana Shehla, Athar Ali Khan
Software Mentions: 3
Published: over 8 years ago

10.3390/ijerph16071264

A Computational Model for Assessing the Population Health Impact of Introducing a Modified Risk Claim on an Existing Smokeless Tobacco Product
Cited by: 6
Author(s): Raheema Muhammad-Kah, Yezdi B. Pithawalla, Edward L. Boone, Lai Wei, Michael A. Jones, Ryan A. Black, Thomas M. Bryan, Mohamadi Sarkar
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0088110

Modeling Malaria Infection and Immunity against Variant Surface Antigens in Príncipe Island, West Africa
Cited by: 1
Author(s): Cátia Bandeiras, Maria Jesus Trovoada, Lígia Antunes Gonçalves, Cláudio R. F. Marinho, Louise Turner, Lars Hviid, Carlos Penha‐Gonçalves, M. Gabriela M. Gomes
Software Mentions: 3
Published: almost 11 years ago

10.1371/journal.pone.0123800

Impact of Colic Pain as a Significant Factor for Predicting the Stone Free Rate of One-Session Shock Wave Lithotripsy for Treating Ureter Stones: A Bayesian Logistic Regression Model Analysis
Cited by: 16
Author(s): Doo Yong Chung, Kang Su Cho, Dae Hun Lee, Jang Hee Han, Dong Hyuk Kang, Hae Do Jung, Jong Kyou Kown, Won Sik Ham, Young Deuk Choi, Joo Yong Lee
Software Mentions: 3
Published: over 9 years ago

10.1007/s10661-020-8223-4

Benchmarking inference methods for water quality monitoring and status classification
Cited by: 9
Author(s): Hoseung Jung, Cornelius Senf, Phil Jordan, Tobias Krueger
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5846

Glacial cycles drive rapid divergence of cryptic field vole species
Cited by: 5
Author(s): Nicholas K. Fletcher, Pelayo Acevedo, Jeremy S. Herman, Joana Paupério, Paulo C. Alves, Jeremy B. Searle
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pone.0147311

Bayesian Estimation of Small Effects in Exercise and Sports Science
Cited by: 55
Author(s): Kerrie Mengersen, Christopher C. Drovandi, Christian P. Robert, David B. Pyne, Christopher J. Gore
Software Mentions: 2
Published: over 8 years ago

10.1038/srep09405

Effects of the Fukushima Daiichi nuclear accident on goshawk reproduction
Cited by: 45
Author(s): Kohei Murase, Joe Murase, Reiko Horie, Koichi Endo
Software Mentions: 2
Published: over 9 years ago

10.1186/s12884-019-2374-8

A simple model to predict risk of gestational diabetes mellitus from 8 to 20 weeks of gestation in Chinese women
Cited by: 46
Author(s): Tao Zheng, Weiping Ye, Xipeng Wang, Xiaoyong Li, Jun Zhang, Julian Little, Lixia Zhang, Lin Zhang
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0244827

The acceptability and uptake of smartphone tracking for COVID-19 in Australia
Cited by: 65
Author(s): Paul Michael Garrett, Joe L. White, Stephan Lewandowsky, Yoshihisa Kashima, Amy Perfors, Daniel R. Little, Nicholas Geard, Lewis Mitchell, Martin Tomko, Simon Dennis
Software Mentions: 2
Published: almost 4 years ago

10.1186/s13023-018-0924-1

Using Bayesian methodology to explore the profile of mental health and well-being in 646 mothers of children with 13 rare genetic syndromes in relation to mothers of children with autism
Cited by: 13
Author(s): Dawn Adams, Richard P. Hastings, Clair Alston-Knox, Rina Cianfaglione, Kate Eden, David John Felce, Gemma M. Griffith, Joanna Moss, Chris Stinton, Chris Oliver
Software Mentions: 1
Published: about 6 years ago

10.1186/s12874-015-0071-5

A novel method for expediting the development of patient-reported outcome measures and an evaluation of its performance via simulation
Cited by: 12
Author(s): Lili Garrard, Larry R. Price, Marjorie J. Bott, Byron J. Gajewski
Software Mentions: 1
Published: about 9 years ago

10.1186/s12874-019-0714-z

Incorporating individual historical controls and aggregate treatment effect estimates into a Bayesian survival trial: a simulation study
Cited by: 9
Author(s): Caroline Brard, Lisa V. Hampson, Nathalie Gaspar, Marie‐Cécile Le Deley, Gwénaël Le Teuff
Software Mentions: 1
Published: over 5 years ago

10.1186/s12874-019-0700-5

A Bayesian hierarchical logistic regression model of multiple informant family health histories
Cited by: 2
Author(s): Jielu Lin, Melanie F. Myers, Laura M. Koehly, Christopher Steven Marcum
Software Mentions: 1
Published: over 5 years ago

10.1186/s12919-016-0064-3

Causal effect estimation in sequencing studies: a Bayesian method to account for confounder adjustment uncertainty
Cited by: 1
Author(s): Chi Wang, Jinpeng Liu, David W. Fardo
Software Mentions: 1
Published: about 8 years ago

10.1186/1297-9716-44-97

Age-dependent patterns of bovine tuberculosis in cattle
Cited by: 51
Author(s): Ellen Brooks-Pollock, Andrew J. K. Conlan, A. Mitchell, Ruth Blackwell, Trevelyan J. McKinley, James Wood
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pntd.0008382

Source attribution of human echinococcosis: A systematic review and meta-analysis
Cited by: 35
Author(s): Paul R. Torgerson, Lucy J. Robertson, Heidi L. Enemark, Junwei Foehr, J.W.B. van der Giessen, Christian M. O. Kapel, Ivana Klun, Chiara Trevisan
Software Mentions: 1
Published: over 4 years ago

10.1002/ece3.3693

Separating the effects of water quality and urbanization on temperate insectivorous bats at the landscape scale
Cited by: 19
Author(s): Han Li, Matina C. Kalcounis‐Rueppell
Software Mentions: 1
Published: almost 7 years ago

10.3389/fmicb.2015.01200

Cross-biome comparison of microbial association networks
Cited by: 132
Author(s): Karoline Faust, Gipsi Lima‐Mendez, Jean‐Sébastien Lerat, J. Fah Sathirapongsasuti, Rob Knight, Curtis Huttenhower, Tom Lenaerts, Jeroen Raes
Software Mentions: 1
Published: about 9 years ago

10.1111/gcb.12166

Artificial light pollution: are shifting spectral signatures changing the balance of species interactions?
Cited by: 168
Author(s): Thomas W. Davies, Jonathan Bennie, Richard Inger, Natalie Hempel de Ibarra, Kevin J. Gaston
Software Mentions: 1
Published: over 11 years ago

10.1093/jxb/erx197

Pyrenoid loss in Chlamydomonas reinhardtii causes limitations in CO2 supply, but not thylakoid operating efficiency
Cited by: 32
Author(s): Oliver D. Caspari, Moritz T. Meyer, Dimitri Tolleter, Tyler M. Wittkopp, Nik J. Cunniffe, Tracy Lawson, Arthur R. Grossman, Howard Griffiths
Software Mentions: 1
Published: over 7 years ago

10.3390/ijerph18031332

Young Adults View Smartphone Tracking Technologies for COVID-19 as Acceptable: The Case of Taiwan
Cited by: 29
Author(s): Paul Michael Garrett, Yuwen Wang, Joe L. White, Shulan Hsieh, Carol Strong, Yi-Chan Lee, Stephan Lewandowsky, Simon Dennis, Cheng Yang
Software Mentions: 1
Published: almost 4 years ago

10.1098/rsif.2013.0194

Where are the horses? With the sheep or cows? Uncertain host location, vector-feeding preferences and the risk of African horse sickness transmission in Great Britain
Cited by: 39
Author(s): Giovanni Lo Iacono, Charlotte Robin, J. R. Newton, Simon Gubbins, James Wood
Software Mentions: 1
Published: over 11 years ago

10.1186/s12911-016-0271-x

Outbreak definition by change point analysis: a tool for public health decision?
Cited by: 44
Author(s): Gaëtan Texier, Magnim Farouh, Liliane Pellegrin, Michael L. Jackson, Jean‐Baptiste Meynard, Xavier Deparis, Hervé Chaudet
Software Mentions: 1
Published: over 8 years ago

Projects: cran: MCMCpack

Papers Mentioning MCMCpack 40