cran: fossil | Projects | Ecosyste.ms: Papers

10.1111/mec.15179

Salinity drives meiofaunal community structure dynamics across the Baltic ecosystem
Cited by: 25
Author(s): Elias Broman, Caroline Raymond, Christian Sommer, Jonas S. Gunnarsson, Simon Creer, Francisco J. A. Nascimento
Software Mentions: 10
Published: about 5 years ago

10.3389/fmicb.2018.02711

Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities
Cited by: 45
Author(s): Ricardo Schöps, Kezia Goldmann, Katharina Herz, Guillaume Lentendu, Ingo Schöning, Helge Bruelheide, Tesfaye Wubet, François Buscot
Software Mentions: 9
Published: almost 6 years ago

10.1186/s40168-017-0235-0

Mentholation affects the cigarette microbiota by selecting for bacteria resistant to harsh environmental conditions and selecting against potential bacterial pathogens
Cited by: 30
Author(s): Jessica Chopyk, Suhana Chattopadhyay, Prachi Kulkarni, Emma Claye, Kelsey R. Babik, Molly C. Reid, Eoghan M. Smyth, Lauren E. Hittle, Joseph N. Paulson, Raul Cruz‐Cano, Mihai Pop, Stephanie Buehler, Pamela I. Clark, Amy R. Sapkota, Emmanuel F. Mongodin
Software Mentions: 8
Published: over 7 years ago

10.3389/fmicb.2017.00358

Temporal Variations in Cigarette Tobacco Bacterial Community Composition and Tobacco-Specific Nitrosamine Content Are Influenced by Brand and Storage Conditions
Cited by: 38
Author(s): Jessica Chopyk, Suhana Chattopadhyay, Prachi Kulkarni, Eoghan M. Smyth, Lauren E. Hittle, Joseph N. Paulson, Mihai Pop, Stephanie Buehler, Pamela I. Clark, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0115137

Metacommunity versus Biogeography: A Case Study of Two Groups of Neotropical Vegetation-Dwelling Arthropods
Cited by: 27
Author(s): Thiago Gonçalves‐Souza, Gustavo Q. Romero, Karl Cottenie
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0233943

Effects of parity, blood progesterone, and non-steroidal anti-inflammatory treatment on the dynamics of the uterine microbiota of healthy postpartum dairy cows
Cited by: 17
Author(s): Osvaldo Bogado Pascottini, J. F. W. Sprícigo, Sabrina J. Van Schyndel, B. Mion, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.6802

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod
Cited by: 7
Author(s): William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale
Software Mentions: 7
Published: almost 4 years ago

10.1186/s40793-020-00365-8

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond
Cited by: 14
Author(s): Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 7
Published: almost 4 years ago

10.1111/ele.12878

Ecological selection of siderophore‐producing microbial taxa in response to heavy metal contamination
Cited by: 90
Author(s): Elze Hesse, Siobhán O’Brien, Nicolas Tromas, Florian Bayer, Adela M. Luján, Eleanor M. van Veen, Dave Hodgson, Angus Buckling
Software Mentions: 7
Published: almost 7 years ago

10.1002/ece3.1405

Limited sampling hampers “big data” estimation of species richness in a tropical biodiversity hotspot
Cited by: 88
Author(s): Kristine Engemann, Brian J. Enquist, Brody Sandel, Brad Boyle, Peter M. Jørgensen, Naia Morueta‐Holme, Robert K. Peet, Cyrille Violle, Jens‐Christian Svenning
Software Mentions: 7
Published: over 9 years ago

10.1038/s41598-019-54039-8

High-starch diets alter equine faecal microbiota and increase behavioural reactivity
Cited by: 27
Author(s): L. Bulmer, Jo Anne Murray, Neil M. Burns, A. Garber, Françoise Wemelsfelder, Neil McEwan, P.M. Hastie
Software Mentions: 7
Published: almost 5 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: almost 10 years ago

10.3389/fmicb.2018.00792

Agricultural Freshwater Pond Supports Diverse and Dynamic Bacterial and Viral Populations
Cited by: 25
Author(s): Jessica Chopyk, Sarah Allard, Daniel J. Nasko, Anthony Bui, Emmanuel F. Mongodin, Amy R. Sapkota
Software Mentions: 6
Published: over 6 years ago

10.1186/s42523-019-0008-0

Faecal inoculations alter the gastrointestinal microbiome and allow dietary expansion in a wild specialist herbivore, the koala
Cited by: 36
Author(s): Michaela D. J. Blyton, Rochelle M. Soo, Desley A. Whisson, Karen J. Marsh, Jack H. Pascoe, Mark Le, William J. Foley, Philip Hugenholtz, Ben D. Moore
Software Mentions: 6
Published: about 5 years ago

10.1186/s12866-017-1103-6

Ciliate diversity and distribution patterns in the sediments of a seamount and adjacent abyssal plains in the tropical Western Pacific Ocean
Cited by: 12
Author(s): Feng Zhao, Sabine Filker, Thorsten Stoeck, Kuidong Xu
Software Mentions: 6
Published: about 7 years ago

10.1111/eva.13227

No leading‐edge effect in North Atlantic harbor porpoises: Evolutionary and conservation implications
Cited by: 2
Author(s): Yacine Ben Chehida, Roisin Loughnane, Julie Thumloup, Kristin Kaschner, Cristina Garilao, Patricia E. Rosel, Michaël C. Fontaine
Software Mentions: 6
Published: over 3 years ago

10.1111/1751-7915.12348

Towards the development of multifunctional molecular indicators combining soil biogeochemical and microbiological variables to predict the ecological integrity of silvicultural practices
Cited by: 2
Author(s): Vincent Peck, Liliana Quiza, Jean‐Philippe Buffet, Mondher Khdhiri, Audrey‐Anne Durand, Alain Paquette, Nelson Thiffault, Christian Messier, Nadyre Beaulieu, Claude Guertin, Philippe Constant
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0140614

Structural Diversity of Bacterial Communities Associated with Bloom-Forming Freshwater Cyanobacteria Differs According to the Cyanobacterial Genus
Cited by: 100
Author(s): Imen Louati, Noémie Pascault, Didier Debroas, Cécile Bernard, Jean‐François Humbert, Julie Leloup
Software Mentions: 5
Published: almost 9 years ago

10.1371/journal.pone.0221055

Faecalibacterium diversity in dairy cow milk
Cited by: 8
Author(s): Keith W. Savin, Jody L. Zawadzki, M.J. Auldist, Jianghui Wang, Doris Ram, Simone Rochfort, Benjamin G. Cocks
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.548618

Microbiome in Healthy Women Between Two Districts With Different Air Quality Index
Cited by: 8
Author(s): Yinhua Wu, Zujin Wang, Yu Zhang, Li-Ming Ruan, Ang Li, Xiaoyan Liu
Software Mentions: 5
Published: almost 4 years ago

10.1186/gb-2014-15-5-r66

Exploration of bacterial community classes in major human habitats
Cited by: 101
Author(s): Yanjiao Zhou, Kathie A. Mihindukulasuriya, Hongyu Gao, Patricio S. La Rosa, Kristine M. Wylie, John Martin, Karthik Kota, William D. Shannon, Makedonka Mitreva, Erica Sodergren, George M. Weinstock
Software Mentions: 5
Published: over 10 years ago

10.1038/s41598-018-35276-9

The relative effects of forest amount, forest configuration, and urban matrix quality on forest breeding birds
Cited by: 24
Author(s): Alexandra V. Shoffner, Andrew Wilson, Wenwu Tang, Sara A. Gagné
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-020-69317-z

Dynamics of uterine microbiota in postpartum dairy cows with clinical or subclinical endometritis
Cited by: 46
Author(s): Osvaldo Bogado Pascottini, Sabrina J. Van Schyndel, J. F. W. Sprícigo, Joyce D. Rousseau, J. Scott Weese, S.J. LeBlanc
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.1720

A comparison of clustering methods for biogeography with fossil datasets
Cited by: 11
Author(s): Matthew J. Vavrek
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-018-32772-w

Multiple processes acting from local to large geographical scales shape bacterial communities associated with Phormidium (cyanobacteria) biofilms in French and New Zealand rivers
Cited by: 13
Author(s): Isidora Echenique‐Subiabre, Anouk Zancarini, Mark W. Heath, Susanna A. Wood, Catherine Quiblier, Jean‐François Humbert
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12898-016-0106-8

Palaeoenvironmental drivers of vertebrate community composition in the Belly River Group (Campanian) of Alberta, Canada, with implications for dinosaur biogeography
Cited by: 22
Author(s): Thomas M. Cullen, David C. Evans
Software Mentions: 4
Published: almost 8 years ago

10.3389/fmicb.2020.579072

Soil Fungal Community Composition, Not Assembly Process, Was Altered by Nitrogen Addition and Precipitation Changes at an Alpine Steppe
Cited by: 12
Author(s): Yuanming Xiao, Changbin Li, Yang Yang, Yunfeng Peng, Yuanhe Yang, Guoying Zhou
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40168-017-0328-9

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows
Cited by: 73
Author(s): Seong-Jeub Jeon, Federico Cunha, A. Vieira-Neto, R.C. Bicalho, Svetlana Lima, M.L.S. Bicalho, Klibs N. Galvão
Software Mentions: 4
Published: about 7 years ago

10.1002/ece3.5200

Strong patterns of intraspecific variation and local adaptation in Great Basin plants revealed through a review of 75 years of experiments
Cited by: 72
Author(s): Owen W. Baughman, Alison C. Agneray, Matthew L. Forister, Francis F. Kilkenny, Erin K. Espeland, Rob Fiegener, Matthew E. Horning, R. C. Johnson, Thomas N. Kaye, Jeff Ott, J. Bradley St. Clair, Elizabeth A. Leger
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-019-5474-y

Microbiota in the apical root canal system of tooth with apical periodontitis
Cited by: 33
Author(s): Wenhao Qian, Ting Ma, Mao Ye, Zhiyao Li, Yuanhua Liu, Hao Pei
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-4806-7

Restriction associated DNA-genotyping at multiple spatial scales in Arabidopsis lyrata reveals signatures of pathogen-mediated selection
Cited by: 9
Author(s): James J. Buckley, Eric B. Holub, Marcus A. Koch, Philippine Vergeer, Barbara K. Mable
Software Mentions: 3
Published: about 6 years ago

10.1098/rsos.181100

Parasites and politics: why cross-cultural studies must control for relatedness, proximity and covariation
Cited by: 41
Author(s): Lindell Bromham, Xia Hua, Marcel Cardillo, Hilde Schneemann, Simon J. Greenhill
Software Mentions: 3
Published: about 6 years ago

10.7717/peerj.11805

The phylogenetic relationships of geoemydid turtles from the Eocene Messel Pit Quarry: a first assessment using methods for continuous and discrete characters
Cited by: 2
Author(s): Eduardo Ascarrunz, Claude Julien, Walter G. Joyce
Software Mentions: 3
Published: about 3 years ago

10.1002/ece3.6104

Comparison of morphological, DNA barcoding, and metabarcoding characterizations of freshwater nematode communities
Cited by: 22
Author(s): Janina Schenk, Nils Kleinbölting, Walter Traunspurger
Software Mentions: 3
Published: over 4 years ago

10.1002/ece3.5122

Responses of species abundance distribution patterns to spatial scaling in subtropical secondary forests
Cited by: 8
Author(s): Anchi Wu, Xiaomin Deng, Honglin He, Xiaoyong Ren, Yiran Jing, Wenhua Xiang, Shuai Ouyang, Wende Yan, Xi Fang
Software Mentions: 3
Published: over 5 years ago

10.3389/fmicb.2015.00017

Polar front associated variation in prokaryotic community structure in Arctic shelf seafloor
Cited by: 23
Author(s): Tan Thi Nguyen, Bjarne Landfald
Software Mentions: 3
Published: over 9 years ago

10.1098/rsos.170796

Benthic communities under anthropogenic pressure show resilience across the Quaternary
Cited by: 13
Author(s): Julieta C. Martinelli, Luis P. Soto, Jorge González, Marcelo M. Rivadeneira
Software Mentions: 3
Published: about 7 years ago

10.1038/srep24711

Flow directionality, mountain barriers and functional traits determine diatom metacommunity structuring of high mountain streams
Cited by: 62
Author(s): Xiaoyu Dong, Bin Li, Fengzhi He, Yang Gu, Meiqin Sun, Haomiao Zhang, Lu Tan, Wen Xiao, Shuoran Liu, Qinghua Cai
Software Mentions: 2
Published: over 8 years ago

10.1186/s40168-020-00912-y

Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery
Cited by: 30
Author(s): Wei Wu, Suraphan Panyod, Po-Yu Liu, Chieh Chang Chen, Hsien‐Li Kao, Hsiao-Li Chuang, Ying Hsien Chen, Hsin Bai Zou, Han Chun Kuo, Ching‐Hua Kuo, Ben-Yang Liao, Tina H.T. Chiu, Chi Hsiang Chung, Angela Yu-Chen Lin, Yi‐Chia Lee, Sen Lin Tang, Jin Town Wang, Yu Wei Wu, Cheng Chih Hsu, Lee‐Yan Sheen, Alexander N. Orekhov, Ming Shiang Wu
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0078698

The Effect of Positive Interactions on Temporal Turnover of Community Composition along an Environmental Gradient
Cited by: 3
Author(s): Youshi Wang, Zhiyong Yang, Shurong Zhou, Janne Soininen, Dexiecuo Ai, Yali Li, Chengjin Chu
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0046164

Immigration, Local Dispersal Limitation, and the Repeatability of Community Composition under Neutral and Niche Dynamics
Cited by: 13
Author(s): Dexiecuo Ai, Philippe Desjardins-Proulx, Chengjin Chu, Gang Wang
Software Mentions: 1
Published: almost 12 years ago

10.3389/fmicb.2018.02519

Biofilm Microbiome (Re)Growth Dynamics in Drinking Water Distribution Systems Are Impacted by Chlorine Concentration
Cited by: 48
Author(s): Katherine E. Fish, Joby Boxall
Software Mentions: 1
Published: almost 6 years ago

10.1002/ece3.3660

Temporal effects of disturbance on community composition in simulated stage‐structured plant communities
Cited by: 5
Author(s): Youshi Wang, Shujun Wen, M. D. Farnon Ellwood, Adam D. Miller, Chengjin Chu
Software Mentions: 1
Published: almost 7 years ago

10.1002/ece3.3903

Hydrological and environmental variables outperform spatial factors in structuring species, trait composition, and beta diversity of pelagic algae
Cited by: 38
Author(s): Naicheng Wu, Yuanzhi Qu, Björn Guse, Kristė Makarevičiūtė, Szewing To, Tenna Riis, Nicola Fohrer
Software Mentions: 1
Published: over 6 years ago

Projects: cran: fossil

Papers Mentioning fossil 44