Packages with Software Mentions in Scientific Papers

cran: mokken

Conducts Mokken Scale Analysis
Papers that mentioned: 30

Very Likely Science (85)

pypi: Babel

Internationalization utilities
Papers that mentioned: 30

Very Likely Science (100)

bioconductor: graphite

GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30

Very Likely Science (100)

psychometrics package, including structural equation model, confirmatory factor analysis, unidimensional item response theory, multidimensional item response theory, cognitive diagnosis model, factor analysis and adaptive testing.
Papers that mentioned: 30

Very Likely Science (75)

pypi: auto

auto package
Papers that mentioned: 30

Very Likely Science (65)

bioconductor: regioneR

Association analysis of genomic regions based on permutation tests
Papers that mentioned: 30

Very Likely Science (100)

pypi: ipynb

Package / Module importer for importing code from Jupyter Notebook files (.ipynb)
Papers that mentioned: 30

Very Likely Science (65)

pypi: Profiles

Papers that mentioned: 30

Unlikely Science (0)

pypi: process

Running processes in python.
Papers that mentioned: 30

Very Likely Science (65)

pypi: graphite

Papers that mentioned: 30

Very Likely Science (65)

pypi: GTC

The GUM Tree Calculator for Python
Papers that mentioned: 30

Very Likely Science (100)

pypi: edition

Creates beautiful HTML and Markdown editions of your documentation
Papers that mentioned: 30

Very Likely Science (65)

bioconductor: affylmGUI

GUI for limma Package with Affymetrix Microarrays
Papers that mentioned: 30

Very Likely Science (78)

pypi: alignment

Native Python library for generic sequence alignment.
Papers that mentioned: 30

Very Likely Science (65)

cran: PoissonSeq

Papers that mentioned: 30

Unlikely Science (0)

cran: locfdr

Computes Local False Discovery Rates
Papers that mentioned: 30

Very Likely Science (83)

cran: psy

Various Procedures Used in Psychometrics
Papers that mentioned: 30

Very Likely Science (75)

cran: MiRKAT

Microbiome Regression-Based Kernel Association Tests
Papers that mentioned: 30

Very Likely Science (93)

pypi: ncbi

Python wrapper for the NCBI C++ Toolkit
Papers that mentioned: 30

Very Likely Science (80)

pypi: Plugins

Easily add hooks and plugins to your applications
Papers that mentioned: 30

Very Likely Science (65)

cran: APIS

Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents
Papers that mentioned: 30

Very Likely Science (75)

pypi: mat

Manage your database versions with pure SQL
Papers that mentioned: 30

Very Likely Science (65)

cran: AMR

Antimicrobial Resistance Data Analysis
Papers that mentioned: 30

Very Likely Science (100)

pypi: mi

description
Papers that mentioned: 30

Very Likely Science (65)

cran: mi

Missing Data Imputation and Model Checking
Papers that mentioned: 30

Very Likely Science (83)

cran: earth

Multivariate Adaptive Regression Splines
Papers that mentioned: 30

Very Likely Science (85)

pypi: mass

Merge and Simplify Scripts: an automated tool for managing, combining and minifying javascript assets for web projects.
Papers that mentioned: 30

Very Likely Science (90)

cran: rcdk

Interface to the 'CDK' Libraries
Papers that mentioned: 30

Very Likely Science (75)

bioconductor: BiocParallel

Bioconductor facilities for parallel evaluation
Papers that mentioned: 30

Very Likely Science (100)

pypi: Robin

Robin is a project for fast and easy binding of python and C++ programs.
Papers that mentioned: 30

Very Likely Science (65)

bioconductor: globaltest

Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Papers that mentioned: 30

Very Likely Science (90)

cran: CTP

Closed Testing Procedure (CTP)
Papers that mentioned: 30

Very Likely Science (75)

cran: M3

Reading M3 files
Papers that mentioned: 30

Very Likely Science (75)

cran: SAMtool

Stock Assessment Methods Toolkit
Papers that mentioned: 30

Very Likely Science (90)

pypi: split

Functions to split or partition sequences.
Papers that mentioned: 30

Very Likely Science (65)

cran: robumeta

Robust Variance Meta-Regression
Papers that mentioned: 30

Very Likely Science (100)

pypi: PIL

Python Imaging Library
Papers that mentioned: 30

Very Likely Science (80)

bioconductor: QuasR

Quantify and Annotate Short Reads in R
Papers that mentioned: 30

Very Likely Science (90)

cran: SAR

Smart Adaptive Recommendations
Papers that mentioned: 30

Very Likely Science (75)

cran: WebGestaltR

Gene Set Analysis Toolkit WebGestaltR
Papers that mentioned: 30

Very Likely Science (100)

pypi: earth

All of it
Papers that mentioned: 30

Very Likely Science (65)

pypi: OpenAlea

Component framework and visual programming environment
Papers that mentioned: 30

Very Likely Science (65)

pypi: jmp

JMP is a Mixed Precision library for JAX.
Papers that mentioned: 30

Very Likely Science (86)

cran: RSiena

Siena - Simulation Investigation for Empirical Network Analysis
Papers that mentioned: 29

Very Likely Science (93)

pypi: Splice

Splice is a git-based wiki system
Papers that mentioned: 29

Very Likely Science (65)

pypi: skewer

Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29

Very Likely Science (65)

cran: Strategy

Generic Framework to Analyze Trading Strategies
Papers that mentioned: 29

Very Likely Science (75)

cran: MplusAutomation

An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus
Papers that mentioned: 29

Very Likely Science (100)

pypi: CPS

Advanced and full featured Open Source ECM framework
Papers that mentioned: 29

Very Likely Science (65)

cran: NADA

Nondetects and Data Analysis for Environmental Data
Papers that mentioned: 29

Very Likely Science (85)

pypi: pangolin

Papers that mentioned: 29

Unlikely Science (0)

pypi: GPy

The Gaussian Process Toolbox
Papers that mentioned: 29

Very Likely Science (100)

pypi: mgm

Papers that mentioned: 29

Unlikely Science (0)

pypi: packages

Papers that mentioned: 29

Very Likely Science (65)

cran: Formula

Extended Model Formulas
Papers that mentioned: 29

Very Likely Science (75)

cran: aroma.affymetrix

Analysis of Large Affymetrix Microarray Data Sets
Papers that mentioned: 29

Very Likely Science (91)

bioconductor: EpiDISH

Epigenetic Dissection of Intra-Sample-Heterogeneity
Papers that mentioned: 29

Very Likely Science (100)

pypi: spaTyper

Typing of Staphylococcus aureus protein A from assemblies
Papers that mentioned: 29

Very Likely Science (100)

cran: gap

Genetic Analysis Package
Papers that mentioned: 29

Very Likely Science (100)

cran: mgm

Estimating Time-Varying k-Order Mixed Graphical Models
Papers that mentioned: 29

Very Likely Science (75)

cran: lars

Least Angle Regression, Lasso and Forward Stagewise
Papers that mentioned: 29

Very Likely Science (93)

cran: akima

Interpolation of Irregularly and Regularly Spaced Data
Papers that mentioned: 29

Likely Science (50)

pypi: akima

Akima Interpolation
Papers that mentioned: 29

Very Likely Science (75)

bioconductor: csaw

ChIP-Seq Analysis with Windows
Papers that mentioned: 29

Very Likely Science (100)

cran: beanplot

Visualization via Beanplots (Like Boxplot/Stripchart/Violin Plot)
Papers that mentioned: 29

Very Likely Science (85)

pypi: pyCRAC

Python NextGen sequencing data processing software
Papers that mentioned: 29

Very Likely Science (90)

cran: glm2

Fitting Generalized Linear Models
Papers that mentioned: 29

Very Likely Science (85)

bioconductor: LACE

Longitudinal Analysis of Cancer Evolution (LACE)
Papers that mentioned: 29

Very Likely Science (100)

cran: WaveletComp

Computational Wavelet Analysis
Papers that mentioned: 29

Very Likely Science (85)

pypi: Relief

datastructure validation
Papers that mentioned: 29

Very Likely Science (65)

pypi: loo

LooMan Cli
Papers that mentioned: 29

Very Likely Science (65)

cran: kinship2

Pedigree Functions
Papers that mentioned: 29

Very Likely Science (83)

cran: rootSolve

Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
Papers that mentioned: 29

Very Likely Science (85)

bioconductor: MIMOSA

Mixture Models for Single-Cell Assays
Papers that mentioned: 29

Very Likely Science (75)

cran: phylobase

Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29

Very Likely Science (100)

pypi: rdp

Pure Python implementation of the Ramer-Douglas-Peucker algorithm
Papers that mentioned: 29

Very Likely Science (75)

cran: ipred

Improved Predictors
Papers that mentioned: 29

Very Likely Science (75)

pypi: lars

A framework for converting web-logs into various formats
Papers that mentioned: 29

Very Likely Science (65)

cran: CRAC

Cosmology R Analysis Code
Papers that mentioned: 29

Very Likely Science (85)

pypi: iRep

calcualte iRep replication rates from metagenome sequencing
Papers that mentioned: 29

Very Likely Science (100)

cran: gvlma

Global Validation of Linear Models Assumptions
Papers that mentioned: 29

Very Likely Science (93)

pypi: gap

Google App Engine project bootstrap
Papers that mentioned: 29

Very Likely Science (65)

cran: ActiveDriver

Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites
Papers that mentioned: 29

Very Likely Science (75)

cran: STAND

Statistical Analysis of Non-Detects
Papers that mentioned: 29

Very Likely Science (85)

cran: MultiPhen

A Package to Test for Multi-Trait Association
Papers that mentioned: 29

Very Likely Science (83)

pypi: epi

Papers that mentioned: 29

Unlikely Science (0)

pypi: Inca

Python Distribution Utilities
Papers that mentioned: 29

Very Likely Science (65)

pypi: Eureqa

Nutonian Eureqa API
Papers that mentioned: 29

Very Likely Science (65)

cran: loo

Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
Papers that mentioned: 29

Very Likely Science (93)

pypi: LHAPDF

Papers that mentioned: 29

Very Likely Science (65)

cran: RcppArmadillo

'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Papers that mentioned: 29

Very Likely Science (100)

bioconductor: CopywriteR

Copy number information from targeted sequencing using off-target reads
Papers that mentioned: 28

Very Likely Science (100)

pypi: mem

memorize tool
Papers that mentioned: 28

Very Likely Science (65)

cran: robCompositions

Compositional Data Analysis
Papers that mentioned: 28

Very Likely Science (85)

pypi: sam

Time series anomaly detection and forecasting
Papers that mentioned: 28

Very Likely Science (80)

pypi: gsea

Papers that mentioned: 28

Unlikely Science (0)

pypi: XY

XY manages document and spreadsheet formats as text.
Papers that mentioned: 28

Very Likely Science (65)

cran: blockrand

Randomization for Block Random Clinical Trials
Papers that mentioned: 28

Very Likely Science (85)

cran: extrafont

Tools for Using Fonts
Papers that mentioned: 28

Very Likely Science (77)

cran: prospectr

Miscellaneous Functions for Processing and Sample Selection of Spectroscopic Data
Papers that mentioned: 28

Very Likely Science (95)