Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi: mat
Manage your database versions with pure SQL
Papers that mentioned: 30
cran: mi
Missing Data Imputation and Model Checking
Papers that mentioned: 30
pypi: process
Running processes in python.
Papers that mentioned: 30
pypi: OpenAlea
Component framework and visual programming environment
Papers that mentioned: 30
pypi: Robin
Robin is a project for fast and easy binding of python and C++ programs.
Papers that mentioned: 30
cran: earth
Multivariate Adaptive Regression Splines
Papers that mentioned: 30
pypi: psy
psychometrics package, including structural equation model, confirmatory factor analysis, unidimensional item response theory, multidimensional item response theory, cognitive diagnosis model, factor analysis and adaptive testing.
Papers that mentioned: 30
cran: robumeta
Robust Variance Meta-Regression
Papers that mentioned: 30
pypi: ncbi
Python wrapper for the NCBI C++ Toolkit
Papers that mentioned: 30
cran: APIS
Auto-Adaptive Parentage Inference Software Tolerant to Missing Parents
Papers that mentioned: 30
pypi: edition
Creates beautiful HTML and Markdown editions of your documentation
Papers that mentioned: 30
pypi: PIL
Python Imaging Library
Papers that mentioned: 30
pypi: ipynb
Package / Module importer for importing code from Jupyter Notebook files (.ipynb)
Papers that mentioned: 30
bioconductor: affylmGUI
GUI for limma Package with Affymetrix Microarrays
Papers that mentioned: 30
pypi: auto
auto package
Papers that mentioned: 30
pypi: graphite
Papers that mentioned: 30
cran: SAMtool
Stock Assessment Methods Toolkit
Papers that mentioned: 30
bioconductor: QuasR
Quantify and Annotate Short Reads in R
Papers that mentioned: 30
bioconductor: regioneR
Association analysis of genomic regions based on permutation tests
Papers that mentioned: 30
pypi: Profiles
Papers that mentioned: 30
pypi: alignment
Native Python library for generic sequence alignment.
Papers that mentioned: 30
cran: rcdk
Interface to the 'CDK' Libraries
Papers that mentioned: 30
pypi: GTC
The GUM Tree Calculator for Python
Papers that mentioned: 30
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
pypi: split
Functions to split or partition sequences.
Papers that mentioned: 30
cran: SAR
Smart Adaptive Recommendations
Papers that mentioned: 30
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
pypi: Plugins
Easily add hooks and plugins to your applications
Papers that mentioned: 30
cran: CTP
Closed Testing Procedure (CTP)
Papers that mentioned: 30
cran: M3
Reading M3 files
Papers that mentioned: 30
pypi: mass
Merge and Simplify Scripts: an automated tool for managing, combining and minifying javascript assets for web projects.
Papers that mentioned: 30
pypi: Babel
Internationalization utilities
Papers that mentioned: 30
cran: mokken
Conducts Mokken Scale Analysis
Papers that mentioned: 30
bioconductor: globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Papers that mentioned: 30
cran: WebGestaltR
Gene Set Analysis Toolkit WebGestaltR
Papers that mentioned: 30
pypi: earth
All of it
Papers that mentioned: 30
cran: CFC
Cause-Specific Framework for Competing-Risk Analysis
Papers that mentioned: 30
cran: AMR
Antimicrobial Resistance Data Analysis
Papers that mentioned: 30
cran: psy
Various Procedures Used in Psychometrics
Papers that mentioned: 30
cran: MiRKAT
Microbiome Regression-Based Kernel Association Tests
Papers that mentioned: 30
cran: PoissonSeq
Papers that mentioned: 30
pypi: mi
description
Papers that mentioned: 30
cran: locfdr
Computes Local False Discovery Rates
Papers that mentioned: 30
pypi: lars
A framework for converting web-logs into various formats
Papers that mentioned: 29
cran: RSiena
Siena - Simulation Investigation for Empirical Network Analysis
Papers that mentioned: 29
cran: mgm
Estimating Time-Varying k-Order Mixed Graphical Models
Papers that mentioned: 29
pypi: mgm
Papers that mentioned: 29
cran: WaveletComp
Computational Wavelet Analysis
Papers that mentioned: 29
cran: rootSolve
Nonlinear Root Finding, Equilibrium and Steady-State Analysis of Ordinary Differential Equations
Papers that mentioned: 29
cran: ipred
Improved Predictors
Papers that mentioned: 29
pypi: packages

Papers that mentioned: 29
pypi: CPS
Advanced and full featured Open Source ECM framework
Papers that mentioned: 29
pypi: spaTyper
Typing of Staphylococcus aureus protein A from assemblies
Papers that mentioned: 29
cran: beanplot
Visualization via Beanplots (Like Boxplot/Stripchart/Violin Plot)
Papers that mentioned: 29
pypi: Splice
Splice is a git-based wiki system
Papers that mentioned: 29
pypi: Inca
Python Distribution Utilities
Papers that mentioned: 29
cran: NADA
Nondetects and Data Analysis for Environmental Data
Papers that mentioned: 29
cran: Formula
Extended Model Formulas
Papers that mentioned: 29
cran: akima
Interpolation of Irregularly and Regularly Spaced Data
Papers that mentioned: 29
cran: aroma.affymetrix
Analysis of Large Affymetrix Microarray Data Sets
Papers that mentioned: 29
cran: MplusAutomation
An R Package for Facilitating Large-Scale Latent Variable Analyses in Mplus
Papers that mentioned: 29
cran: STAND
Statistical Analysis of Non-Detects
Papers that mentioned: 29
cran: Strategy
Generic Framework to Analyze Trading Strategies
Papers that mentioned: 29
cran: ActiveDriver
Finding Cancer Driver Proteins with Enriched Mutations in Post-Translational Modification Sites
Papers that mentioned: 29
cran: gvlma
Global Validation of Linear Models Assumptions
Papers that mentioned: 29
pypi: Eureqa
Nutonian Eureqa API
Papers that mentioned: 29
bioconductor: LACE
Longitudinal Analysis of Cancer Evolution (LACE)
Papers that mentioned: 29
pypi: akima
Akima Interpolation
Papers that mentioned: 29
pypi: rdp
Pure Python implementation of the Ramer-Douglas-Peucker algorithm
Papers that mentioned: 29
pypi: GPy
The Gaussian Process Toolbox
Papers that mentioned: 29
cran: MultiPhen
A Package to Test for Multi-Trait Association
Papers that mentioned: 29
pypi: epi
Papers that mentioned: 29
bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
cran: lars
Least Angle Regression, Lasso and Forward Stagewise
Papers that mentioned: 29
pypi: loo
LooMan Cli
Papers that mentioned: 29
cran: CRAC
Cosmology R Analysis Code
Papers that mentioned: 29
pypi: iRep
calcualte iRep replication rates from metagenome sequencing
Papers that mentioned: 29
pypi: gap
Google App Engine project bootstrap
Papers that mentioned: 29
pypi: skewer
Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29
cran: RcppArmadillo
'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library
Papers that mentioned: 29
cran: loo
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
Papers that mentioned: 29
bioconductor: EpiDISH
Epigenetic Dissection of Intra-Sample-Heterogeneity
Papers that mentioned: 29
cran: kinship2
Pedigree Functions
Papers that mentioned: 29
pypi: LHAPDF

Papers that mentioned: 29
cran: phylobase
Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29
pypi: pangolin
Papers that mentioned: 29
bioconductor: MIMOSA
Mixture Models for Single-Cell Assays
Papers that mentioned: 29
cran: glm2
Fitting Generalized Linear Models
Papers that mentioned: 29
cran: gap
Genetic Analysis Package
Papers that mentioned: 29
pypi: pyCRAC
Python NextGen sequencing data processing software
Papers that mentioned: 29
pypi: Relief
datastructure validation
Papers that mentioned: 29
pypi: Voice
A voting app for letting users request features.
Papers that mentioned: 28
bioconductor: CopywriteR
Copy number information from targeted sequencing using off-target reads
Papers that mentioned: 28
cran: blockrand
Randomization for Block Random Clinical Trials
Papers that mentioned: 28
cran: CoSMoS
Complete Stochastic Modelling Solution
Papers that mentioned: 28
cran: extrafont
Tools for Using Fonts
Papers that mentioned: 28
bioconductor: BitSeq
Papers that mentioned: 28
cran: survIDINRI
IDI and NRI for Comparing Competing Risk Prediction Models with Censored Survival Data
Papers that mentioned: 28
pypi: CABS
CABS in python
Papers that mentioned: 28
cran: leaps
Regression Subset Selection
Papers that mentioned: 28