cran: CRAC | Projects | Ecosyste.ms: Papers

10.1016/j.isci.2021.102762

NANOS2 is a sequence-specific mRNA-binding protein that promotes transcript degradation in spermatogonial stem cells
Cited by: 9
Author(s): Azzurra Codino, Tomasz W. Turowski, Louie N. van de Lagemaat, Ivayla Ivanova, Andrea Tavosanis, Christian Much, Tania Auchynnikava, Lina Vasiliauskaitė, Marcos Morgan, Juri Rappsilber, Robin Allshire, Kamil R. Kranc, David Tollervey, Dónal O’Carroll
Software Mentions: 8
Published: over 3 years ago

10.1016/j.molcel.2020.06.002

Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates
Cited by: 41
Author(s): Tomasz W. Turowski, Elisabeth Petfalski, Benjamin D. Goddard, Sarah L. French, Aleksandra Helwak, David Tollervey
Software Mentions: 8
Published: over 4 years ago

10.15252/msb.20188689

Defining the <scp>RNA</scp> interactome by total <scp>RNA</scp> ‐associated protein purification
Cited by: 103
Author(s): Vadim Shchepachev, Stefan Bresson, Christos Spanos, Elisabeth Petfalski, Lutz Fischer, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: over 5 years ago

10.1016/j.molcel.2020.09.021

Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors
Cited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: about 4 years ago

10.1186/1471-2164-15-1103

An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
Cited by: 75
Author(s): Romain Blanc-Mathieu, Bram Verhelst, Évelyne Derelle, Stéphane Rombauts, François‐Yves Bouget, Isabelle A. Carré, Annie Château, Adam Eyre‐Walker, Nigel Grimsley, Hervé Moreau, Benoît Piégu, Éric Rivals, Wendy Schackwitz, Yves Van de Peer, Gwenaël Piganeau
Software Mentions: 5
Published: almost 10 years ago

10.1038/s41598-019-40127-2

Unravelling paralogous gene expression dynamics during three-spined stickleback embryogenesis
Cited by: 7
Author(s): Elisavet Kaitetzidou, Ioanna Katsiadaki, Jacques Lagnel, Efthimia Antonopoulou, Elena Sarropoulou
Software Mentions: 4
Published: over 5 years ago

10.15252/msb.20166869

Strand‐specific, high‐resolution mapping of modified RNA polymerase II
Cited by: 46
Author(s): Laura Milligan, Vân Anh Huynh-Thu, Clémentine Delan-Forino, Alex Tuck, Elisabeth Petfalski, Rodrigo Lombraña, Guido Sanguinetti, Grzegorz Kudla, David Tollervey
Software Mentions: 4
Published: over 8 years ago

10.12688/f1000research.19426.1

Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads
Cited by: 2
Author(s): Andrian Yang, Jiangjun Tang, Michael Troup, Joshua W. K. Ho
Software Mentions: 4
Published: about 5 years ago

10.1186/s12864-020-07289-0

Long non-coding RNA exploration for mesenchymal stem cell characterisation
Cited by: 2
Author(s): Sébastien Riquier, Marc Mathieu, Chloé Bessière, Anthony Boureux, Florence Rufflé, Jean-Marc Lemaı̂tre, Farida Djouad, Nicolas Gilbert, Thérèse Commes
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.27082

RNA polymerase II stalling at pre-mRNA splice sites is enforced by ubiquitination of the catalytic subunit
Cited by: 14
Author(s): Laura Milligan, Camille Sayou, Alex Tuck, Tatsiana Auchynnikava, Jane E. A. Reid, Ross D. Alexander, Flávia de Lima Alves, Robin C. Allshire, Christos Spanos, Juri Rappsilber, Jean D. Beggs, Grzegorz Kudla, David Tollervey
Software Mentions: 3
Published: about 7 years ago

10.1186/s12859-017-1831-5

SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
Cited by: 8
Author(s): Jérôme Audoux, Mikaël Salson, Christophe Grosset, Sacha Beaumeunier, Jean-Marc Holder, Thérèse Commes, Philippe Naveilhan
Software Mentions: 3
Published: about 7 years ago

10.12688/f1000research.11352.2

New chimeric RNAs in acute myeloid leukemia
Cited by: 8
Author(s): Florence Rufflé, Jérôme Audoux, Anthony Boureux, Sacha Beaumeunier, Jean‐Baptiste Gaillard, Elias Bou Samra, André Mégarbané, Bruno Cassinat, Christine Chomienne, Ronnie Alves, Sébastien Riquier, Nicolas Gilbert, Jean-Marc Lemaı̂tre, Delphine Bacq‐Daian, Anne Laure Bougé, Philippe Naveilhan, Thérèse Commes
Software Mentions: 3
Published: almost 7 years ago

10.1186/gb-2013-14-3-r30

CRAC: an integrated approach to the analysis of RNA-seq reads
Cited by: 70
Author(s): Philippe Naveilhan, Mikaël Salson, Thérèse Commes, Éric Rivals
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12859-018-2589-0

NCLcomparator: systematically post-screening non-co-linear transcripts (circular, trans-spliced, or fusion RNAs) identified from various detectors
Cited by: 16
Author(s): Chia-Ying Chen, Trees‐Juen Chuang
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12920-016-0178-5

A unified analytic framework for prioritization of non-coding variants of uncertain significance in heritable breast and ovarian cancer
Cited by: 22
Author(s): Eliseos J. Mucaki, Natasha Caminsky, Ami M. Perri, Ruipeng Lu, Alain Laederach, Matthew Halvorsen, Joan H.M. Knoll
Software Mentions: 2
Published: over 8 years ago

10.1016/j.ymeth.2013.10.015

Hyb: A bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data
Cited by: 72
Author(s): Anthony J. Travis, Jonathan Moody, Aleksandra Helwak, David Tollervey, Grzegorz Kudla
Software Mentions: 2
Published: almost 11 years ago

10.1371/journal.pgen.1006699

Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex
Cited by: 37
Author(s): Clémentine Delan-Forino, Claudia Schneider, David Tollervey
Software Mentions: 2
Published: over 7 years ago

10.15252/embj.2019101548

Termination of non‐coding transcription in yeast relies on both an RNA Pol II CTD interaction domain and a CTD‐mimicking region in Sen1
Cited by: 21
Author(s): Zhong Chao Han, Olga Jasnovidova, Nouhou Haidara, Agnieszka Tudek, Karel Kubíček, Domenico Libri, Richard Štefl, Odil Porrúa
Software Mentions: 2
Published: over 4 years ago

10.1016/j.dib.2021.106951

Data from crosslinking and analysis of cDNAs (CRAC) of Nab3 in yeast cells expressing a circular ncRNA decoy
Cited by: 1
Author(s): Tommaso Villa, Yan Jaszczyszyn, Domenico Libri
Software Mentions: 1
Published: over 3 years ago

10.3389/fmolb.2018.00020

The Ever-Evolving Concept of the Gene: The Use of RNA/Protein Experimental Techniques to Understand Genome Functions
Cited by: 24
Author(s): Andrea Cipriano, Monica Ballarino
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pgen.1006804

Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation
Cited by: 75
Author(s): Sunny Sharma, Jun Yang, Rob W. van Nues, Peter Watzinger, Peter Kötter, Denis L. J. Lafontaine, Sander Granneman, Karl‐Dieter Entian
Software Mentions: 1
Published: over 7 years ago

10.1186/gb4152

Methods for comprehensive experimental identification of RNA-protein interactions
Cited by: 137
Author(s): Colleen A. McHugh, Pamela Russell, Mitchell Guttman
Software Mentions: 1
Published: almost 11 years ago

10.1016/j.molcel.2009.09.039

Prp43 Bound at Different Sites on the Pre-rRNA Performs Distinct Functions in Ribosome Synthesis
Cited by: 151
Author(s): Markus T. Bohnsack, Roman Martin, Sander Granneman, Maike Ruprecht, Enrico Schleiff, David Tollervey
Software Mentions: 1
Published: about 15 years ago

10.1155/2014/208983

Prediction Based Proactive Thermal Virtual Machine Scheduling in Green Clouds
Cited by: 6
Author(s): Supriya Kinger, Rajesh Kumar, Anju Sharma
Software Mentions: 1
Published: almost 11 years ago

10.7554/eLife.40802

Pervasive transcription fine-tunes replication origin activity
Cited by: 21
Author(s): Tito Candelli, Julien Gros, Domenico Libri
Software Mentions: 1
Published: almost 6 years ago

10.3390/membranes10120425

Molecular Choreography and Structure of Ca2+ Release-Activated Ca2+ (CRAC) and KCa2+ Channels and Their Relevance in Disease with Special Focus on Cancer
Cited by: 8
Author(s): Adéla Tiffner, Isabella Derler
Software Mentions: 1
Published: almost 4 years ago

10.3390/ijms22041953

Allosteric Modulation of GPCRs of Class A by Cholesterol
Cited by: 34
Author(s): Ján Jakubík, Esam E. El‐Fakahany
Software Mentions: 1
Published: almost 4 years ago

10.1186/s13040-016-0112-6

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs
Cited by: 5
Author(s): Sacha Beaumeunier, Jérôme Audoux, Anthony Boureux, Florence Rufflé, Thérèse Commes, Philippe Naveilhan, Ronnie Alves
Software Mentions: 1
Published: about 8 years ago

10.1098/rsob.170001

Novel layers of RNA polymerase III control affecting tRNA gene transcription in eukaryotes
Cited by: 33
Author(s): Ewa Leśniewska, Magdalena Boguta
Software Mentions: 1
Published: almost 8 years ago

Ecosyste.ms: Papers

Projects: cran: CRAC

Papers Mentioning CRAC 29