Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: globaltest
https://packages.ecosyste.ms/registries/bioconductor.org/packages/globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
1 version
Latest release: about 1 year ago
6 dependent packages
198,698 downloads total
Papers Mentioning globaltest 30
10.1371/journal.pone.0127163
Genetic Deletion of the Transcriptional Repressor NFIL3 Enhances Axon Growth In Vitro but Not Axonal Repair In VivoCited by: 2
Author(s): L.R. van der Kallen, Ruben Eggers, Erich Ehlert, Joost Verhaagen, August B. Smit, Ronald E. van Kesteren
Software Mentions: 8
Published: over 9 years ago
10.1186/1471-2164-12-507
Chipster: user-friendly analysis software for microarray and other high-throughput dataCited by: 294
Author(s): M Aleksi Kallio, Jarno Tuimala, Taavi Hupponen, Petri Klemelä, Massimiliano Gentile, Ilari Scheinin, M.K. Koski, Janne Käki, Eija Korpelainen
Software Mentions: 8
Published: about 13 years ago
10.1371/journal.pone.0015581
Therapeutic Implications of GIPC1 Silencing in CancerCited by: 21
Author(s): Thomas Chittenden, Jane Pak, Renee Rubio, Hai‐Ling Margaret Cheng, Kristina M. Holton, Niall Prendergast, Vladimir Glinskii, Yi Cai, Aedín C. Culhane, Stefan Bentink, Mathew Schwede, Jessica C. Mar, Eleanor Howe, Martin J. Aryee, Răzvan Sultana, Anthony A. Lanahan, Jennifer Taylor, Chris Holmes, William C. Hahn, Jean J. Zhao, J. Dirk Iglehart, John Quackenbush
Software Mentions: 6
Published: almost 14 years ago
10.1371/journal.pcbi.1002350
Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck CancerCited by: 66
Author(s): Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jiànróng Lǐ, Tanguy Y. Seiwert, Ezra E.W. Cohen, H. Rosie Xing, Yves A. Lussier
Software Mentions: 6
Published: almost 13 years ago
10.1186/1471-2105-9-88
Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry dataCited by: 43
Author(s): Wouter Meuleman, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Jos H. Beijnen, Marcel J. T. Reinders, Lodewyk Wessels
Software Mentions: 5
Published: almost 17 years ago
10.1186/1471-2105-10-203
Integrated analysis of DNA copy number and gene expression microarray data using gene setsCited by: 57
Author(s): Renée X. de Menezes, Marten Boetzer, Melle Sieswerda, Gert‐Jan B. van Ommen, Judith M. Boer
Software Mentions: 5
Published: over 15 years ago
10.1186/s13601-016-0105-z
Cow’s milk allergy in Dutch children: an epigenetic pilot surveyCited by: 36
Author(s): Nicole C. M. Petrus, Peter Henneman, Andrea Venema, Adri N. Mul, Femke van Sinderen, Martin A. Haagmans, Olaf R.F. Mook, Raoul C. M. Hennekam, A. B. Sprikkelman, Marcel M.A.M. Mannens
Software Mentions: 5
Published: over 8 years ago
10.1371/journal.pone.0038365
Detection of Simultaneous Group Effects in MicroRNA Expression and Related Target Gene SetsCited by: 21
Author(s): Stephan Artmann, Klaus Jung, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 5
Published: over 12 years ago
10.1186/1471-2164-9-124
Can subtle changes in gene expression be consistently detected with different microarray platforms?Cited by: 48
Author(s): Paola Pedotti, Peter A C ‘t Hoen, Erno Vreugdenhil, Geert J. Schenk, Rolf H. A. M. Vossen, Yavuz Ariyürek, Mattias de Hollander, Rowan Kuiper, G.J.B. van Ommen, Johan T. den Dunnen, Judith M. Boer, Renée X. de Menezes
Software Mentions: 5
Published: over 16 years ago
10.1186/1471-2105-11-78
Testing the additional predictive value of high-dimensional molecular dataCited by: 34
Author(s): Anne‐Laure Boulesteix, Torsten Hothorn
Software Mentions: 5
Published: almost 15 years ago
10.1186/1471-2164-15-132
Major aging-associated RNA expressions change at two distinct age-positionsCited by: 17
Author(s): Marius Gheorghe, M.M.J. Snoeck, Michael Emmerich, Thomas Bäck, Jelle J. Goeman, Vered Raz
Software Mentions: 5
Published: almost 11 years ago
10.1186/1471-2164-11-574
Heading Down the Wrong Pathway: on the Influence of Correlation within Gene SetsCited by: 74
Author(s): Daniel M. Gatti, William T. Barry, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright
Software Mentions: 3
Published: about 14 years ago
10.3389/fbioe.2015.00023
Analytical Methods in Untargeted Metabolomics: State of the Art in 2015Cited by: 465
Author(s): Arnald Alonso, Sara Marsal, Antonio Julià
Software Mentions: 3
Published: over 9 years ago
10.3390/ijms17071167
Clinical Metabolomics: The New Metabolic Window for Inborn Errors of Metabolism Investigations in the Post-Genomic EraCited by: 87
Author(s): Abdellah Tebani, Lénaïg Abily-Donval, Carlos Afonso, Stéphane Marret, Soumeya Bekri
Software Mentions: 2
Published: over 8 years ago
10.1186/1755-8794-4-29
Sex hormones and gene expression signatures in peripheral blood from postmenopausal women - the NOWAC postgenome studyCited by: 10
Author(s): Marit Waaseth, Karina Standahl Olsen, Charlotta Rylander, Eiliv Lund, Vanessa Dumeaux
Software Mentions: 2
Published: over 13 years ago
10.1186/s12917-021-02763-7
Metabolic profile distinguishes laminitis-susceptible and -resistant ponies before and after feeding a high sugar dietCited by: 5
Author(s): Julien Delarocque, Dania Reiche, Alexandra Meier, Tobias Warnken, Karsten Feige, Martin N. Sillence
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0001203
Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine TissuesCited by: 27
Author(s): Henrik Hornshøj, Lene N Conley, Jakob Hedegaard, Peter Sørensen, Frank Panitz, Christian Berthou
Software Mentions: 2
Published: about 17 years ago
10.1038/s41431-019-0563-6
TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophyCited by: 29
Author(s): Pietro Spitali, Irina Zaharieva, Stefan Böhringer, Monika Hiller, Amina Chaouch, Andreas Roos, C. Scotton, Mireille Claustres, Luca Bello, Craig McDonald, Eric P. Hoffman, Cinrg Investigators, Z. Koeks, H. Eka D. Suchiman, Sebahattin Çırak, Mariacristina Scoto, Mojgan Reza, Peter A C ‘t Hoen, Erik H. Niks, Sylvie Tuffery‐Giraud, Hanns Lochmüller, Alessandra Ferlini, Francesco Muntoni, Annemieke Aartsma‐Rus
Software Mentions: 2
Published: almost 5 years ago
10.3390/biom10030390
Altered Plasma Acylcarnitines and Amino Acids Profile in Spinocerebellar Ataxia Type 7Cited by: 6
Author(s): Rafael Nambo‐Venegas, Claudia Valdez-Vargas, Bulmaro Cisneros, Berenice Palacios‐González, Marcela Vela-Amieva, Isabel Ibarra-González, César M. Cerecedo-Zapata, Emilio Martínez-Cruz, Hernán Cortés, Juan Pablo Reyes‐Grajeda, Jonathan J. Magaña
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0047184
TFPI Alpha and Beta Regulate mRNAs and microRNAs Involved in Cancer Biology and in the Immune System in Breast Cancer CellsCited by: 12
Author(s): Benedicte Stavik, Grethe Skretting, Ole Kristoffer Olstad, Marit Sletten, Magnus Dehli Vigeland, Per Morten Sandset, Nina Iversen
Software Mentions: 1
Published: about 12 years ago
10.7554/eLife.26014
MicroCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ systemCited by: 56
Author(s): Matthew Hur, Charlotte Gistelinck, Philippe Huber, Jane Lee, Marjorie H. Thompson, Adrian T. Monstad-Rios, Claire J. Watson, Sarah K. McMenamin, Andy Willaert, David M. Parichy, Paul Coucke, Ronald Y. Kwon
Software Mentions: 1
Published: about 7 years ago
10.1186/s12916-020-01878-2
Association between patterns of alcohol consumption (beverage type, frequency and consumption with food) and risk of adverse health outcomes: a prospective cohort studyCited by: 40
Author(s): Bhautesh Jani, Ross McQueenie, Barbara I. Nicholl, Ryan Field, Peter Hanlon, Katie Gallacher, Frances S Mair, Jim Lewsey
Software Mentions: 1
Published: almost 4 years ago
10.1186/1471-2407-13-245
IR/IGF1R signaling as potential target for treatment of high-grade osteosarcomaCited by: 70
Author(s): Marieke L. Kuijjer, Elisabeth F. P. Peterse, Brendy E.W.M. van den Akker, Inge H. Briaire-de Bruijn, Massimo Serra, Leonardo A. Meza‐Zepeda, Ola Myklebost, A. Bassim Hassan, Pancras C.W. Hogendoorn, Anne Marie Cleton-Jansen
Software Mentions: 1
Published: over 11 years ago
10.1186/1471-2105-10-422
Quantitative comparison of microarray experiments with published leukemia related gene expression signaturesCited by: 40
Author(s): Hans-Ulrich Klein, Christian Rückert, Alexander Kohlmann, Lars Bullinger, Christian Thiede, Torsten Haferlach, Martin Dugas
Software Mentions: 1
Published: almost 15 years ago
10.1186/s12859-018-2418-5
miRTissue: a web application for the analysis of miRNA-target interactions in human tissuesCited by: 7
Author(s): Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Alfonso Urso
Software Mentions: 1
Published: about 6 years ago
10.1186/1471-2105-9-292
Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed modelsCited by: 150
Author(s): Dawei Liu, Debashis Ghosh, Xihong Lin
Software Mentions: 1
Published: over 16 years ago
10.3389/fgene.2013.00231
A discovery study of daunorubicin induced cardiotoxicity in a sample of acute myeloid leukemia patients prioritizes P450 oxidoreductase polymorphisms as a potential risk factorCited by: 57
Author(s): Joanna M. Lubieniecka, Jinko Graham, Daniel Heffner, Randy Mottus, Ronald E. Reid, Donna E. Hogge, Thomas A. Grigliatti, Wayne Riggs
Software Mentions: 1
Published: almost 12 years ago
10.1007/s11306-020-01712-z
Distinct serum metabolomic signatures of multiparous and primiparous dairy cows switched from a moderate to high-grain diet during early lactationCited by: 5
Author(s): Cátia Pacífico, A. Stauder, Nicole Reisinger, Heidi E. Schwartz-Zimmermann, Qendrim Zebeli
Software Mentions: 1
Published: about 4 years ago
10.1186/s13058-015-0663-3
Insulin-like growth factor 1 receptor expression and IGF1R 3129G > T polymorphism are associated with response to neoadjuvant chemotherapy in breast cancer patients: results from the NEOZOTAC trial (BOOG 2010-01)Cited by: 27
Author(s): Stefanie de Groot, Ayoub Charehbili, Hanneke W. M. van Laarhoven, Antien L. Mooyaart, N.G. Dekker-Ensink, Saskia van de Ven, Laura G.M. Janssen, Jesse J. Swen, Vincent T.H.B.M. Smit, Joan B. Heijns, Lonneke W. Kessels, Tahar van der Straaten, Stefan Böhringer, Hans Gelderblom, J.J.M. van der Hoeven, Henk‐Jan Guchelaar, Hanno Pijl, Judith R. Kroep
Software Mentions: 1
Published: almost 9 years ago