bioconductor: globaltest | Projects

10.1371/journal.pone.0127163

Genetic Deletion of the Transcriptional Repressor NFIL3 Enhances Axon Growth In Vitro but Not Axonal Repair In Vivo
Cited by: 2
Author(s): L.R. van der Kallen, Ruben Eggers, Erich Ehlert, Joost Verhaagen, August B. Smit, Ronald E. van Kesteren
Software Mentions: 8
Published: over 9 years ago

10.1186/1471-2164-12-507

Chipster: user-friendly analysis software for microarray and other high-throughput data
Cited by: 294
Author(s): M Aleksi Kallio, Jarno Tuimala, Taavi Hupponen, Petri Klemelä, Massimiliano Gentile, Ilari Scheinin, M.K. Koski, Janne Käki, Eija Korpelainen
Software Mentions: 8
Published: about 13 years ago

10.1371/journal.pone.0015581

Therapeutic Implications of GIPC1 Silencing in Cancer
Cited by: 21
Author(s): Thomas Chittenden, Jane Pak, Renee Rubio, Hai‐Ling Margaret Cheng, Kristina M. Holton, Niall Prendergast, Vladimir Glinskii, Yi Cai, Aedín C. Culhane, Stefan Bentink, Mathew Schwede, Jessica C. Mar, Eleanor Howe, Martin J. Aryee, Răzvan Sultana, Anthony A. Lanahan, Jennifer Taylor, Chris Holmes, William C. Hahn, Jean J. Zhao, J. Dirk Iglehart, John Quackenbush
Software Mentions: 6
Published: almost 14 years ago

10.1371/journal.pcbi.1002350

Single Sample Expression-Anchored Mechanisms Predict Survival in Head and Neck Cancer
Cited by: 66
Author(s): Xinan Yang, Kelly Regan, Yong Huang, Qingbei Zhang, Jiànróng Lǐ, Tanguy Y. Seiwert, Ezra E.W. Cohen, H. Rosie Xing, Yves A. Lussier
Software Mentions: 6
Published: almost 13 years ago

10.1186/1471-2105-9-88

Comparison of normalisation methods for surface-enhanced laser desorption and ionisation (SELDI) time-of-flight (TOF) mass spectrometry data
Cited by: 43
Author(s): Wouter Meuleman, Judith Y. M. N. Engwegen, Marie-Christine W. Gast, Jos H. Beijnen, Marcel J. T. Reinders, Lodewyk Wessels
Software Mentions: 5
Published: almost 17 years ago

10.1186/1471-2105-10-203

Integrated analysis of DNA copy number and gene expression microarray data using gene sets
Cited by: 57
Author(s): Renée X. de Menezes, Marten Boetzer, Melle Sieswerda, Gert‐Jan B. van Ommen, Judith M. Boer
Software Mentions: 5
Published: over 15 years ago

10.1186/s13601-016-0105-z

Cow’s milk allergy in Dutch children: an epigenetic pilot survey
Cited by: 36
Author(s): Nicole C. M. Petrus, Peter Henneman, Andrea Venema, Adri N. Mul, Femke van Sinderen, Martin A. Haagmans, Olaf R.F. Mook, Raoul C. M. Hennekam, A. B. Sprikkelman, Marcel M.A.M. Mannens
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0038365

Detection of Simultaneous Group Effects in MicroRNA Expression and Related Target Gene Sets
Cited by: 21
Author(s): Stephan Artmann, Klaus Jung, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 5
Published: over 12 years ago

10.1186/1471-2164-9-124

Can subtle changes in gene expression be consistently detected with different microarray platforms?
Cited by: 48
Author(s): Paola Pedotti, Peter A C ‘t Hoen, Erno Vreugdenhil, Geert J. Schenk, Rolf H. A. M. Vossen, Yavuz Ariyürek, Mattias de Hollander, Rowan Kuiper, G.J.B. van Ommen, Johan T. den Dunnen, Judith M. Boer, Renée X. de Menezes
Software Mentions: 5
Published: almost 17 years ago

10.1186/1471-2105-11-78

Testing the additional predictive value of high-dimensional molecular data
Cited by: 34
Author(s): Anne‐Laure Boulesteix, Torsten Hothorn
Software Mentions: 5
Published: almost 15 years ago

10.1186/1471-2164-15-132

Major aging-associated RNA expressions change at two distinct age-positions
Cited by: 17
Author(s): Marius Gheorghe, M.M.J. Snoeck, Michael Emmerich, Thomas Bäck, Jelle J. Goeman, Vered Raz
Software Mentions: 5
Published: almost 11 years ago

10.1186/1471-2164-11-574

Heading Down the Wrong Pathway: on the Influence of Correlation within Gene Sets
Cited by: 74
Author(s): Daniel M. Gatti, William T. Barry, Andrew B. Nobel, Ivan Rusyn, Fred A. Wright
Software Mentions: 3
Published: about 14 years ago

10.3389/fbioe.2015.00023

Analytical Methods in Untargeted Metabolomics: State of the Art in 2015
Cited by: 465
Author(s): Arnald Alonso, Sara Marsal, Antonio Julià
Software Mentions: 3
Published: almost 10 years ago

10.3390/ijms17071167

Clinical Metabolomics: The New Metabolic Window for Inborn Errors of Metabolism Investigations in the Post-Genomic Era
Cited by: 87
Author(s): Abdellah Tebani, Lénaïg Abily-Donval, Carlos Afonso, Stéphane Marret, Soumeya Bekri
Software Mentions: 2
Published: over 8 years ago

10.1186/1755-8794-4-29

Sex hormones and gene expression signatures in peripheral blood from postmenopausal women - the NOWAC postgenome study
Cited by: 10
Author(s): Marit Waaseth, Karina Standahl Olsen, Charlotta Rylander, Eiliv Lund, Vanessa Dumeaux
Software Mentions: 2
Published: over 13 years ago

10.1186/s12917-021-02763-7

Metabolic profile distinguishes laminitis-susceptible and -resistant ponies before and after feeding a high sugar diet
Cited by: 5
Author(s): Julien Delarocque, Dania Reiche, Alexandra Meier, Tobias Warnken, Karsten Feige, Martin N. Sillence
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0001203

Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues
Cited by: 27
Author(s): Henrik Hornshøj, Lene N Conley, Jakob Hedegaard, Peter Sørensen, Frank Panitz, Christian Berthou
Software Mentions: 2
Published: about 17 years ago

10.1038/s41431-019-0563-6

TCTEX1D1 is a genetic modifier of disease progression in Duchenne muscular dystrophy
Cited by: 29
Author(s): Pietro Spitali, Irina Zaharieva, Stefan Böhringer, Monika Hiller, Amina Chaouch, Andreas Roos, C. Scotton, Mireille Claustres, Luca Bello, Craig McDonald, Eric P. Hoffman, Cinrg Investigators, Z. Koeks, H. Eka D. Suchiman, Sebahattin Çırak, Mariacristina Scoto, Mojgan Reza, Peter A C ‘t Hoen, Erik H. Niks, Sylvie Tuffery‐Giraud, Hanns Lochmüller, Alessandra Ferlini, Francesco Muntoni, Annemieke Aartsma‐Rus
Software Mentions: 2
Published: almost 5 years ago

10.3390/biom10030390

Altered Plasma Acylcarnitines and Amino Acids Profile in Spinocerebellar Ataxia Type 7
Cited by: 6
Author(s): Rafael Nambo‐Venegas, Claudia Valdez-Vargas, Bulmaro Cisneros, Berenice Palacios‐González, Marcela Vela-Amieva, Isabel Ibarra-González, César M. Cerecedo-Zapata, Emilio Martínez-Cruz, Hernán Cortés, Juan Pablo Reyes‐Grajeda, Jonathan J. Magaña
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0047184

TFPI Alpha and Beta Regulate mRNAs and microRNAs Involved in Cancer Biology and in the Immune System in Breast Cancer Cells
Cited by: 12
Author(s): Benedicte Stavik, Grethe Skretting, Ole Kristoffer Olstad, Marit Sletten, Magnus Dehli Vigeland, Per Morten Sandset, Nina Iversen
Software Mentions: 1
Published: about 12 years ago

10.7554/eLife.26014

MicroCT-based phenomics in the zebrafish skeleton reveals virtues of deep phenotyping in a distributed organ system
Cited by: 56
Author(s): Matthew Hur, Charlotte Gistelinck, Philippe Huber, Jane Lee, Marjorie H. Thompson, Adrian T. Monstad-Rios, Claire J. Watson, Sarah K. McMenamin, Andy Willaert, David M. Parichy, Paul Coucke, Ronald Y. Kwon
Software Mentions: 1
Published: over 7 years ago

10.1186/s12916-020-01878-2

Association between patterns of alcohol consumption (beverage type, frequency and consumption with food) and risk of adverse health outcomes: a prospective cohort study
Cited by: 40
Author(s): Bhautesh Jani, Ross McQueenie, Barbara I. Nicholl, Ryan Field, Peter Hanlon, Katie Gallacher, Frances S Mair, Jim Lewsey
Software Mentions: 1
Published: almost 4 years ago

10.1186/1471-2407-13-245

IR/IGF1R signaling as potential target for treatment of high-grade osteosarcoma
Cited by: 70
Author(s): Marieke L. Kuijjer, Elisabeth F. P. Peterse, Brendy E.W.M. van den Akker, Inge H. Briaire-de Bruijn, Massimo Serra, Leonardo A. Meza‐Zepeda, Ola Myklebost, A. Bassim Hassan, Pancras C.W. Hogendoorn, Anne Marie Cleton-Jansen
Software Mentions: 1
Published: over 11 years ago

10.1186/1471-2105-10-422

Quantitative comparison of microarray experiments with published leukemia related gene expression signatures
Cited by: 40
Author(s): Hans-Ulrich Klein, Christian Rückert, Alexander Kohlmann, Lars Bullinger, Christian Thiede, Torsten Haferlach, Martin Dugas
Software Mentions: 1
Published: about 15 years ago

10.1186/s12859-018-2418-5

miRTissue: a web application for the analysis of miRNA-target interactions in human tissues
Cited by: 7
Author(s): Antonino Fiannaca, Massimo La Rosa, Laura La Paglia, Alfonso Urso
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2105-9-292

Estimation and testing for the effect of a genetic pathway on a disease outcome using logistic kernel machine regression via logistic mixed models
Cited by: 150
Author(s): Dawei Liu, Debashis Ghosh, Xihong Lin
Software Mentions: 1
Published: over 16 years ago

10.3389/fgene.2013.00231

A discovery study of daunorubicin induced cardiotoxicity in a sample of acute myeloid leukemia patients prioritizes P450 oxidoreductase polymorphisms as a potential risk factor
Cited by: 57
Author(s): Joanna M. Lubieniecka, Jinko Graham, Daniel Heffner, Randy Mottus, Ronald E. Reid, Donna E. Hogge, Thomas A. Grigliatti, Wayne Riggs
Software Mentions: 1
Published: almost 12 years ago

10.1007/s11306-020-01712-z

Distinct serum metabolomic signatures of multiparous and primiparous dairy cows switched from a moderate to high-grain diet during early lactation
Cited by: 5
Author(s): Cátia Pacífico, A. Stauder, Nicole Reisinger, Heidi E. Schwartz-Zimmermann, Qendrim Zebeli
Software Mentions: 1
Published: over 4 years ago

10.1186/s13058-015-0663-3

Insulin-like growth factor 1 receptor expression and IGF1R 3129G > T polymorphism are associated with response to neoadjuvant chemotherapy in breast cancer patients: results from the NEOZOTAC trial (BOOG 2010-01)
Cited by: 27
Author(s): Stefanie de Groot, Ayoub Charehbili, Hanneke W. M. van Laarhoven, Antien L. Mooyaart, N.G. Dekker-Ensink, Saskia van de Ven, Laura G.M. Janssen, Jesse J. Swen, Vincent T.H.B.M. Smit, Joan B. Heijns, Lonneke W. Kessels, Tahar van der Straaten, Stefan Böhringer, Hans Gelderblom, J.J.M. van der Hoeven, Henk‐Jan Guchelaar, Hanno Pijl, Judith R. Kroep
Software Mentions: 1
Published: almost 9 years ago

Ecosyste.ms: Papers

Projects: bioconductor: globaltest

Papers Mentioning globaltest 30