Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-12-507

https://doi.org/10.1186/1471-2164-12-507

Chipster: user-friendly analysis software for microarray and other high-throughput data

Cited by: 294
Author(s): M Aleksi Kallio, Jarno Tuimala, Taavi Hupponen, Petri Klemelä, Massimiliano Gentile, Ilari Scheinin, M.K. Koski, Janne Käki, Eija Korpelainen
Published: about 13 years ago

Software Mentions 8

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
Papers that mentioned: 30
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: phenodata
phenodata is an acquisition and processing toolkit for open access phenology data
Papers that mentioned: 3
pypi: RLE
RLE - RunLengthEncoding package for data compression
Papers that mentioned: 9