cran: MultiPhen | Projects | Ecosyste.ms: Papers

10.3389/fgene.2021.682638

Scalable and Robust Regression Methods for Phenome-Wide Association Analysis on Large-Scale Biobank Data
Cited by: 2
Author(s): Wenjian Bi, Seunggeun Lee
Software Mentions: 10
Published: over 3 years ago

10.1098/rsob.170125

Statistical methods to detect pleiotropy in human complex traits
Cited by: 98
Author(s): Sophie Hackinger, Eleftheria Zeggini
Software Mentions: 5
Published: about 7 years ago

10.3389/fgene.2020.00431

MetaPhat: Detecting and Decomposing Multivariate Associations From Univariate Genome-Wide Association Statistics
Cited by: 10
Author(s): Jake Lin, Rubina Tabassum, Samuli Ripatti, Matti Pirinen
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1007139

An efficient Bayesian meta-analysis approach for studying cross-phenotype genetic associations
Cited by: 40
Author(s): Årindam Majumdar, Tanushree Haldar, Sourabh Bhattacharya, John S. Witte
Software Mentions: 4
Published: almost 7 years ago

10.1371/journal.pone.0139642

Assessing the Power of Exome Chips
Cited by: 6
Author(s): Christian M. Page, Sergio E. Baranzini, Bjørn-Helge Mevik, Steffan Daniël Bos, Hanne F. Harbo, Bettina Kulle Andreassen
Software Mentions: 4
Published: about 9 years ago

10.1038/s42003-020-1051-9

Analysis of genetically independent phenotypes identifies shared genetic factors associated with chronic musculoskeletal pain conditions
Cited by: 34
Author(s): Yakov A. Tsepilov, Maxim B. Freidin, Alexandra S. Shadrina, Sodbo Sharapov, Elizaveta E. Elgaeva, Jan Van Zundert, Lennart C. Karssen, Pradeep Suri, Frances Williams, Yurii S. Aulchenko
Software Mentions: 3
Published: over 4 years ago

10.1038/s41431-018-0327-8

Comparison of methods for multivariate gene-based association tests for complex diseases using common variants
Cited by: 22
Author(s): Jaeyoon Chung, Gyungah Jun, Josée Dupuis, Lindsay A. Farrer
Software Mentions: 3
Published: almost 6 years ago

10.1093/bioinformatics/bty197

PhenotypeSimulator: A comprehensive framework for simulating multi-trait, multi-locus genotype to phenotype relationships
Cited by: 28
Author(s): Hannah Meyer, Ewan Birney
Software Mentions: 3
Published: over 6 years ago

10.1093/brain/awy141

Genetic study of multimodal imaging Alzheimer’s disease progression score implicates novel loci
Cited by: 51
Author(s): Marzia Antonella Scelsi, Rehan Khan, Marco Lorenzi, Leigh Christopher, Michael D. Greicius, Jonathan M. Schott, Sébastien Ourselin, André Altmann
Software Mentions: 3
Published: over 6 years ago

10.1186/s12859-017-1791-9

Identifying pleiotropic genes in genome-wide association studies from related subjects using the linear mixed model and Fisher combination function
Cited by: 1
Author(s): James Yang, L. Keoki Williams, Anne Buu
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pone.0190788

A novel method to test associations between a weighted combination of phenotypes and genetic variants
Cited by: 12
Author(s): Huanhuan Zhu, Shuanglin Zhang, Qiuying Sha
Software Mentions: 2
Published: almost 7 years ago

10.3389/fgene.2021.654804

A Novel Approach Integrating Hierarchical Clustering and Weighted Combination for Association Study of Multiple Phenotypes and a Genetic Variant
Cited by: 6
Author(s): Liwan Fu, Yuquan Wang, Tingting Li, Yue‐Qing Hu
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0126637

Association between Stress Response Genes and Features of Diurnal Cortisol Curves in the Multi-Ethnic Study of Atherosclerosis: A New Multi-Phenotype Approach for Gene-Based Association Tests
Cited by: 6
Author(s): Zihuai He, Erin Payne, Bhramar Mukherjee, Seunggeun Lee, Jennifer A. Smith, Erin B. Ware, Brisa N. Sánchez, Teresa E. Seeman, Sharon L.R. Kardia, Ana V. Diez Roux
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0034861

MultiPhen: Joint Model of Multiple Phenotypes Can Increase Discovery in GWAS
Cited by: 327
Author(s): Paul F. O’Reilly, Clive Hoggart, Yotsawat Pomyen, Federico C. F. Calboli, Paul Elliott, Marjo‐Riitta Järvelin, Lachlan Coin
Software Mentions: 2
Published: over 12 years ago

10.1038/s41598-020-80661-y

Impact of low-frequency coding variants on human facial shape
Cited by: 2
Author(s): Dongjing Liu, Nora Alhazmi, Harold Matthews, Myoung Keun Lee, Jiarui Li, Jacqueline Hecht, George L. Wehby, Lina M. Moreno, Carrie L. Heike, Jasmien Roosenboom, Eleanor Feingold, Mary L. Marazita, Peter Claes, Eric C. Liao, Seth M. Weinberg, John R. Shaffer
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0240910

Genome-wide pathway-based quantitative multiple phenotypes analysis
Cited by: 0
Author(s): Yamin Deng, Shiman Wu, Huifang Fan
Software Mentions: 1
Published: about 4 years ago

10.1186/s12864-017-3928-7

GATE: an efficient procedure in study of pleiotropic genetic associations
Cited by: 4
Author(s): Wei Zhang, Yang Liu, Larry Tang, Aiyi Liu, James L. Mills, Yajuan Sun, Qizhai Li
Software Mentions: 1
Published: over 7 years ago

10.1093/bioinformatics/btu783

MGAS: a powerful tool for multivariate gene-based genome-wide association analysis
Cited by: 42
Author(s): Sophie van der Sluis, Conor V. Dolan, Jiang Li, You‐Qiang Song, Pak C. Sham, Daniëlle Posthuma, Miaoxin Li
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pgen.1003235

TATES: Efficient Multivariate Genotype-Phenotype Analysis for Genome-Wide Association Studies
Cited by: 189
Author(s): Sophie van der Sluis, Daniëlle Posthuma, Conor V. Dolan
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pone.0071345

Population Genomics of Cardiometabolic Traits: Design of the University College London-London School of Hygiene and Tropical Medicine-Edinburgh-Bristol (UCLEB) Consortium
Cited by: 37
Author(s): Tina Shah, Jorgen Engmann, Caroline Dale, Sonia Shah, Jon White, Claudia Giambartolomei, Stela McLachlan, Delilah Zabaneh, Alana Cavadino, Chris Finan, Andrew Wong, Antoinette Amuzu, Ken K. Ong, Tom R. Gaunt, Michael V. Holmes, Helen R. Warren, T. Jonathan Davies, Fotios Drenos, Jackie A. Cooper, Reecha Sofat, Mark Caulfield, Shah Ebrahim, Debbie A. Lawlor, Philippa J. Talmud, Steve E. Humphries, Christine Power, Elina Hyppönen, Marcus Richards, Rebecca Hardy, Diana Kuh, Nicholas J. Wareham, Yoav Ben-Shlomo, Ian N.M. Day, Peter H. Whincup, Richard W Morris, Mark W. J. Strachan, Jacqueline F Price, Meena Kumari, Mika Kivimäki, Vincent Plagnol, Frank Dudbridge, John C. Whittaker, Juan P. Casas, Aroon D. Hingorani
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0149206

Missense Variant in MAPK Inactivator PTPN5 Is Associated with Decreased Severity of Post-Burn Hypertrophic Scarring
Cited by: 13
Author(s): Ravi F. Sood, Saman Arbabi, Shari Honari, Nicole S. Gibran
Software Mentions: 1
Published: almost 9 years ago

10.1186/s12859-016-1437-3

SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes
Cited by: 21
Author(s): Reedik Mägi, Yury V. Suleimanov, Geraldine M. Clarke, Marika Kaakinen, Krista Fischer, Inga Prokopenko, Andrew P. Morris
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0140348

Association Tests of Multiple Phenotypes: ATeMP
Cited by: 8
Author(s): Xiaotong Guo, Yixi Li, Xiaohu Ding, Mingguang He, Xueqin Wang, Heping Zhang
Software Mentions: 1
Published: about 9 years ago

10.1371/journal.pone.0095923

A Comparison of Multivariate Genome-Wide Association Methods
Cited by: 162
Author(s): Tessel E. Galesloot, Kristel Van Steen, Lambertus A. Kiemeney, Luc Janss, Sita H. Vermeulen
Software Mentions: 1
Published: over 10 years ago

10.1038/ejhg.2017.90

A rare-variant test for high-dimensional data
Cited by: 11
Author(s): Marika Kaakinen, Reedik Mägi, Krista Fischer, Jani Heikkinen, Marjo‐Riitta Järvelin, Andrew P. Morris, Inga Prokopenko
Software Mentions: 1
Published: over 7 years ago

10.3389/fgene.2016.00185

Shared Genetic Etiology of Autoimmune Diseases in Patients from a Biorepository Linked to De-identified Electronic Health Records
Cited by: 12
Author(s): Nicole A. Restrepo, Mariusz Butkiewicz, Josephine A. McGrath, Dana C. Crawford
Software Mentions: 1
Published: about 8 years ago

Ecosyste.ms: Papers

Projects: cran: MultiPhen

Papers Mentioning MultiPhen 29