Ecosyste.ms: Papers

10.1371/journal.pone.0159046

Accuracy and Calibration of Computational Approaches for Inpatient Mortality Predictive Modeling
Cited by: 13
Author(s): Christos T. Nakas, Narayan Schütz, Marcus Werners, Alexander Benedikt Leichtle
Software Mentions: 13
Published: over 8 years ago

10.3390/ijms161226230

MicroRNA-Target Network Inference and Local Network Enrichment Analysis Identify Two microRNA Clusters with Distinct Functions in Head and Neck Squamous Cell Carcinoma
Cited by: 12
Author(s): Steffen Sass, Adriana Pitea, Kristian Unger, Julia Heß, Nikola S. Mueller, Fabian J. Theis
Software Mentions: 9
Published: almost 9 years ago

10.3389/fninf.2021.561689

QDECR: A Flexible, Extensible Vertex-Wise Analysis Framework in R
Cited by: 13
Author(s): Sander Lamballais, Ryan L. Muetzel
Software Mentions: 9
Published: over 3 years ago

10.1111/eva.13273

Planned missing data designs and methods: Options for strengthening inference, increasing research efficiency and improving animal welfare in ecological and evolutionary research
Cited by: 7
Author(s): Daniel W. A. Noble, Shinichi Nakagawa
Software Mentions: 8
Published: over 3 years ago

10.18632/oncotarget.25756

Increased HSF1 expression predicts shorter disease-specific survival of prostate cancer patients following radical prostatectomy
Cited by: 17
Author(s): Johanna Björk, Ilmari Ahonen, Tuomas Mirtti, Andrew Erickson, Antti Rannikko, Anna Bützow, Stig Nordling, Johan Lundin, Mikael Lundin, Lea Sistonen, Matthias Nees, Malin Åkerfelt
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0157703

A Fit-Fat Index for Predicting Incident Diabetes in Apparently Healthy Men: A Prospective Cohort Study
Cited by: 23
Author(s): Robert A. Sloan, Benjamin Haaland, Susumu S. Sawada, I-Min Lee, Xuemei Sui, Duck-chul Lee, Yassine Ridouane, Falk Müller‐Riemenschneider, Steven N. Blair
Software Mentions: 5
Published: over 8 years ago

10.1038/srep21689

Multiple Imputation for General Missing Data Patterns in the Presence of High-dimensional Data
Cited by: 59
Author(s): Yi Deng, Changgee Chang, Moges Ido, Qi Long
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12890-020-01202-x

Data driven decision making to characterize clinical personas of parents of children with cystic fibrosis: a mixed methods study
Cited by: 1
Author(s): Rhonda Szczesniak, Teresa Pestian, Leo L. Duan, Dan Li, Sophia Stamper, Brycen Ferrara, Elizabeth L. Kramer, John Clancy, Daniel H. Grossoehme
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0228849

Prevalence and correlates of anal intercourse among female sex workers in eSwatini
Cited by: 3
Author(s): Branwen Nia Owen, Mathieu M-Giroux, Sindy Matse, Zandile Mnisi, Stefan Baral, Sosthenes Ketende, Rebecca F. Baggaley, Marie Claude Boily
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12982-017-0062-6

Model checking in multiple imputation: an overview and case study
Cited by: 116
Author(s): Cattram Nguyen, John B. Carlin, Katherine J. Lee
Software Mentions: 4
Published: about 7 years ago

10.1002/cti2.1087

Rapid sequencing‐based diagnosis of infectious bacterial species from meningitis patients in Zambia
Cited by: 26
Author(s): So Nakagawa, Shigeaki Inoue, Kirill Kryukov, Junya Yamagishi, Ayumu Ohno, Kyoko Hayashida, Ruth Nakazwe, Mox Kalumbi, Darlington Mwenya, Nana Asami, Chihiro Sugimoto, Mable Mutengo, Tadashi Imanishi
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12859-017-1791-9

Identifying pleiotropic genes in genome-wide association studies from related subjects using the linear mixed model and Fisher combination function
Cited by: 1
Author(s): James Yang, L. Keoki Williams, Anne Buu
Software Mentions: 3
Published: about 7 years ago

10.1186/s12866-016-0916-z

Evolutionary diversification of Pseudomonas aeruginosa in an artificial sputum model
Cited by: 29
Author(s): Emily V Davies, Chloë E. James, Michael A. Brockhurst, Craig Winstanley
Software Mentions: 3
Published: almost 8 years ago

10.1186/s12889-021-10900-y

Associations between neighborhood violence during pregnancy and birth outcomes: evidence from São Paulo’s Western Region Birth Cohort
Cited by: 3
Author(s): Angélica Carreira dos Santos, Alexandra Brentani, Guenther Fink
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pntd.0007562

Distinguishing patients with laboratory-confirmed chikungunya from dengue and other acute febrile illnesses, Puerto Rico, 2012–2015
Cited by: 12
Author(s): Luisa I. Alvarado, Olga Lorenzi, Brenda Torres-Velásquez, Tyler M. Sharp, Luzeida Vargas, Jorge L. Muñoz‐Jordán, Elizabeth Hunsperger, Janice Pérez-Padilla, Aidsa Rivera, Gladys E. González-Zeno, Renee L. Galloway, Mindy G. Elrod, Demetrius L. Mathis, M. Steven Oberste, W. Allan Nix, Elizabeth Henderson, Jennifer H. McQuiston, Joseph Singleton, Cecilia Y. Kato, Carlos García-Gubern, William Santiago-Rivera, Robert Muns-Sosa, Juan D. Ortiz-Rivera, Gerson Jiménez, Vanessa Rivera‐Amill, Doris A. Andújar-Pérez, Kalanthe Horiuchi, Kay M. Tomashek
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0005859

Clinical and epidemiologic characteristics of dengue and other etiologic agents among patients with acute febrile illness, Puerto Rico, 2012–2015
Cited by: 47
Author(s): Kay M. Tomashek, Olga Lorenzi, Doris A. Andújar-Pérez, Brenda Torres-Velásquez, Elizabeth Hunsperger, Jorge L. Muñoz‐Jordán, Janice Pérez-Padilla, Aidsa Rivera, Gladys E. González-Zeno, Tyler M. Sharp, Renee L. Galloway, Mindy G. Elrod, Demetrius L. Mathis, M. Steven Oberste, W. Allan Nix, Elizabeth Henderson, Jennifer H. McQuiston, Joseph Singleton, Cecilia Y. Kato, Carlos García Gubern, William Santiago-Rivera, Jesús Cruz-Correa, Robert Muns-Sosa, Juan D. Ortiz-Rivera, Gerson Jiménez, Ivonne E. Galarza, Kalanthe Horiuchi, Harold S. Margolis, Luisa I. Alvarado
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0164630

Factor Structure, Reliability, and Validity of the Japanese Version of the Disgust Propensity and Sensitivity Scale-Revised
Cited by: 11
Author(s): Kazunori Iwasa, Tsunehiko Tanaka, Yuki Yamada
Software Mentions: 2
Published: about 8 years ago

10.1371/journal.pone.0106377

Who Was Concerned about Radiation, Food Safety, and Natural Disasters after the Great East Japan Earthquake and Fukushima Catastrophe? A Nationwide Cross-Sectional Survey in 2012
Cited by: 22
Author(s): Takashi Sugimoto, Tomohiro Shinozaki, Takashi Naruse, Yuki Miyamoto
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0102987

Statistical Cluster Analysis of the British Thoracic Society Severe Refractory Asthma Registry: Clinical Outcomes and Phenotype Stability
Cited by: 94
Author(s): Chris Newby, Liam G. Heaney, Andrew Menzies‐Gow, Robert Niven, Adel Mansur, Christine Bucknall, Rekha Chaudhuri, John Thompson, Paul R. Burton, Christopher E. Brightling
Software Mentions: 2
Published: over 10 years ago

10.1002/mbo3.1100

Snow microbiome functional analyses reveal novel aspects of microbial metabolism of complex organic compounds
Cited by: 5
Author(s): Chengsheng Zhu, Maximilian Miller, Nicholas Lusskin, Benoît Bergk Pinto, Lorrie Maccario, Max M. Häggblom, Timothy M. Vogel, Catherine Larose, Yana Bromberg
Software Mentions: 2
Published: over 4 years ago

10.7497/j.issn.2095-3941.2015.0080

The decision-making process for senior cancer patients: treatment allocation of older women with operable breast cancer in the UK.
Cited by: 5
Author(s): Jenna Morgan, Paul Richards, Osama Zaman, Sue Ward, Karen Collins, Thompson G. Robinson, Kwok-Leung Cheung, Riccardo A. Audisio, Malcolm Reed, Lynda Wyld
Software Mentions: 2
Published: almost 9 years ago

10.1186/s13104-016-2365-z

Longitudinal multiple imputation approaches for body mass index or other variables with very low individual-level variability: the mibmi command in Stata
Cited by: 14
Author(s): Evangelos Kontopantelis, Rosa Parisi, David A. Springate, David Reeves
Software Mentions: 2
Published: almost 8 years ago

10.3389/fpls.2020.612106

A Modified Roger’s Distance Algorithm for Mixed Quantitative–Qualitative Phenotypes to Establish a Core Collection for Taiwanese Vegetable Soybeans
Cited by: 10
Author(s): Chung-Feng Kao, Shan-Syue He, Changsheng Wang, Zheng-Yuan Lai, Dachuan Lin, Shu Chen
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.13902

MiR-17 family-mediated regulation of Pknox1 influences hepatic steatosis and insulin signaling
Cited by: 11
Author(s): Dan Ye, Guohua Lou, Tianbao Zhang, Fengqin Dong, Yanning Liu
Software Mentions: 2
Published: about 6 years ago

10.1186/s12889-015-2390-1

Multiple imputation for non-response when estimating HIV prevalence using survey data
Cited by: 13
Author(s): Amos Chinomona, Henry Mwambi
Software Mentions: 2
Published: about 9 years ago

10.1186/s13063-019-3461-x

Prevention of Morbidity in Sickle Cell Disease (POMS2a)—overnight auto-adjusting continuous positive airway pressure compared with nocturnal oxygen therapy: a randomised crossover pilot study examining patient preference and safety in adults and children
Cited by: 7
Author(s): Jo Howard, Sophie Lee, Baba Inusa, Man Cheng, Cheema Bavenjit, Isabel Reading, Sally Ann Wakeford, Johanna Gavlak, Patrick B. Murphy, Nicholas Hart, Atul Gupta, Sati Sahota, Eufemia Jacob, Maria Chorozoglou, Carol Ossai, Maureen Gwam, Fenella J. Kirkham, Angela Wade, Christina Liossi
Software Mentions: 2
Published: over 5 years ago

10.1093/hropen/hox018

How much variation in oocyte yield after controlled ovarian stimulation can be explained? A multilevel modelling study
Cited by: 16
Author(s): Oybek Rustamov, Jack Wilkinson, Antonio La Marca, Cheryl Fitzgerald, Stephen A Roberts
Software Mentions: 2
Published: almost 8 years ago

10.1186/1471-2334-12-65

HIV incidence estimate combining HIV/AIDS surveillance, testing history information and HIV test to identify recent infections in Lazio, Italy
Cited by: 16
Author(s): Alessia Mammone, Patrizio Pezzotti, Claudio Angeletti, Nicoletta Orchi, Angela Carboni, Assunta Navarra, Maria R. Sciarrone, Catia Sias, Vincenzo Puro, Gabriella Guasticchi, Giuseppe Ippolito, Piero Borgia, Enrico Girardi
Software Mentions: 2
Published: over 12 years ago

10.1007/s11060-017-2514-9

External validation of the diffuse intrinsic pontine glioma survival prediction model: a collaborative report from the International DIPG Registry and the SIOPE DIPG Registry
Cited by: 21
Author(s): Sophie E M Veldhuijzen van Zanten, Adam Lane, Martijn W. Heymans, Joshua Baugh, Brooklyn Chaney, Lindsey M. Hoffman, Renee Doughman, Marc Jansen, Esther Sánchez, W. Peter Vandertop, Gertjan J. L. Kaspers, Dannis G. van Vuurden, Maryam Fouladi, Blaise V. Jones, James Leach
Software Mentions: 2
Published: over 7 years ago

10.1186/1472-6963-11-257

Factors associated with use of community mental health services by schizophrenia patients using multilevel analysis
Cited by: 19
Author(s): Berta Moreno-Küstner, Fermín Mayoral, Fabio Rivas, Pedro Angona, Javier Requena, José María García‐Herrera, David Navas, Patricia I. Moreno, Antoni Serrano‐Blanco, Juan Ángel Bellón
Software Mentions: 2
Published: about 13 years ago