Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: gap

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/gap

Genetic Analysis Package
50 versions
Latest release: about 1 year ago
5 dependent packages
10,364 downloads last month

Papers Mentioning gap 29

10.1590/0074-02760170489
Single nucleotide polymorphisms of cytokine-related genes and association with clinical outcome in a Chagas disease case-control study from Brazil
Cited by: 10
Author(s): Lucia Elena Alvarado-Arnez, Angélica Martins Batista, Sílvia Marinho Martins Alves, Gloria Melo, Virgínia Maria Barros de Lorena, Cynthia Chester Cardoso, Isabela Resende Pereira, Cristina de Fátima Velloso Carrazzone, Antônio Guilherme Pacheco, Wilson Alves de Oliveira, Milton Ozório Moraes, Joseli Lannes-Vieira
Software Mentions: 13
Published: over 6 years ago
10.1038/s41598-021-84909-z
Omics data integration identifies ELOVL7 and MMD gene regions as novel loci for adalimumab response in patients with Crohn’s disease
Cited by: 8
Author(s): Mario Gorenjak, Mateja Zupin, Gregor Jezernik, Pavel Skok, Uroš Potočnik
Software Mentions: 9
Published: over 3 years ago
10.3389/fimmu.2018.00615
Genetic Polymorphism at CCL5 Is Associated With Protection in Chagas’ Heart Disease: Antagonistic Participation of CCR1+ and CCR5+ Cells in Chronic Chagasic Cardiomyopathy
Cited by: 23
Author(s): Angélica Martins Batista, Lucia Elena Alvarado-Arnez, Sílvia Marinho Martins Alves, Gloria Melo, Isabela Resende Pereira, Leonardo Alexandre de Souza Ruivo, Andréa Alice Silva, Daniel Gibaldi, Thayse do E. S. Protásio da Silva, Virgínia Maria Barros de Lorena, Adriene Siqueira de Melo, Ana Karine de Araújo Soares, Michelle da Silva Barros, Vláudia Maria Assis Costa, Cynthia Chester Cardoso, Antônio Guilherme Pacheco, Cristina de Fátima Velloso Carrazzone, Wilson Alves de Oliveira, Milton Ozório Moraes, Joseli Lannes‐Vieira
Software Mentions: 9
Published: over 6 years ago
10.1371/journal.pone.0163170
Single Nucleotide Polymorphisms in Cellular Drug Transporters Are Associated with Intolerance to Antiretroviral Therapy in Brazilian HIV-1 Positive Individuals
Cited by: 8
Author(s): Mónica Arruda, Francine Campagnari, Tailah Bernardo de Almeida, José Carlos Couto-Fernandez, Amílcar Tanuri, Cynthia Chester Cardoso
Software Mentions: 8
Published: almost 8 years ago
10.1186/s12864-015-1945-y
Genome-wide association study dissects genetic architecture underlying longitudinal egg weights in chickens
Cited by: 34
Author(s): Guoqiang Yi, Manman Shen, Jiahui Yuan, Chang Sun, Zhongyi Duan, Liang Qu, Taocun Dou, Meng Ma, Jian Lü, Jun Guo, Sirui Chen, Lujiang Qu, Kehua Wang, Ning Yang
Software Mentions: 5
Published: almost 9 years ago
10.1371/journal.pntd.0005992
Candidate genes-based investigation of susceptibility to Human African Trypanosomiasis in Côte d’Ivoire
Cited by: 12
Author(s): Bernardin Ahouty, Mathurin Koffi, Hamidou Ilboudo, Gustave Simo, Enock Matovu, Julius Mulindwa, Christiane Hertz‐Fowler, Bruno Bucheton, Issa Sidibé, Vincent Jamonneau, Annette MacLeod, Harry Noyes, Simon-Pierre A. Nguetta
Software Mentions: 5
Published: almost 7 years ago
10.5194/aab-62-113-2019
Identification of potential genomic regions and candidate genes for egg albumen quality by a genome-wide association study
Cited by: 9
Author(s): Liang Qu, Manman Shen, Jun Guo, Xingguo Wang, Taocun Dou, Yuping Hu, Yongfeng Li, Meng Ma, Kehua Wang, Honglin Liu
Software Mentions: 4
Published: over 5 years ago
10.1186/s12881-020-01005-1
Association between FCGR2A rs1801274 and MUC5B rs35705950 variations and pneumonia susceptibility
Cited by: 6
Author(s): Xueshu Shi, Yaqi Ma, Haiyan Li, Huanxin Yu
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pntd.0007603
Association of APOL1 renal disease risk alleles with Trypanosoma brucei rhodesiense infection outcomes in the northern part of Malawi
Cited by: 12
Author(s): Kelita Kamoto, Harry Noyes, Peter Nambala, Edward Senga, Janelisa Musaya, Benjamin Kumwenda, Bruno Bucheton, Annette MacLeod, Anneli Cooper, Caroline Clucas, Christiane Herz-Fowler, Enock Matove, Arthur Chiwaya, John Chisi
Software Mentions: 4
Published: about 5 years ago
10.1371/journal.pone.0189955
A genome-wide study to identify genes responsible for oviduct development in chickens
Cited by: 9
Author(s): Manman Shen, Liang Qu, Meng Ma, Taocun Dou, Jian Lü, Jun Guo, Yuping Hu, Xingguo Wang, Yongfeng Li, Kehua Wang, Ning Yang
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.1612
Temporal dynamics of linkage disequilibrium in two populations of bighorn sheep
Cited by: 10
Author(s): Joshua M. Miller, Jocelyn Poissant, René M. Malenfant, John T. Hogg, David W. Coltman
Software Mentions: 4
Published: about 9 years ago
10.1038/srep28836
Genetic architecture dissection by genome-wide association analysis reveals avian eggshell ultrastructure traits
Cited by: 11
Author(s): Zhongyi Duan, Chang Sun, Manman Shen, Kehua Wang, Ning Yang, Jiangxia Zheng, Guiyun Xu
Software Mentions: 4
Published: about 8 years ago
10.1186/1471-230X-9-95
Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers
Cited by: 252
Author(s): Lotta Krogius-Kurikka, Anna Lyra, Erja Malinen, Johannes Aarnikunnas, Jarno Tuimala, Lars Paulín, Harri Mäkivuokko, Kajsa Kajander, Airi Palva
Software Mentions: 3
Published: almost 15 years ago
10.1186/1471-2164-7-172
Gene identification and analysis of transcripts differentially regulated in fracture healing by EST sequencing in the domestic sheep
Cited by: 24
Author(s): Jochen Hecht, Heiner Kuhl, Stefan A. Haas, Sebastian Bauer, Albert J. Poustka, Jasmin Lienau, Hanna Schell, Asita C. Stiege, Volkhard Seitz, Richard Reinhardt, Georg N. Duda, Stefan Mundlos, Peter N. Robinson
Software Mentions: 3
Published: about 18 years ago
10.1371/journal.pone.0187246
Integrative analysis of genome-wide gene copy number changes and gene expression in non-small cell lung cancer
Cited by: 44
Author(s): Verena Jabs, Karolina Edlund, Helena König, Marianna Grinberg, Katrin Madjar, Jörg Rahnenführer, Simon Ekman, Michael Bergkvist, Lars Holmberg, Katja Ickstadt, Johan Botling, Jan G. Hengstler, Patrick Micke
Software Mentions: 3
Published: almost 7 years ago
10.1002/2211-5463.12003
Mutational probing of protein aggregates to design aggregation‐resistant proteins
Cited by: 5
Author(s): Mohamad Zahid Kamal, Virender Kumar, Kundarapu Satyamurthi, Kushal Kumar Das, Nalam Madhusudhana Rao
Software Mentions: 3
Published: over 8 years ago
10.1038/srep45317
Genetic architecture of bone quality variation in layer chickens revealed by a genome-wide association study
Cited by: 23
Author(s): Jiao Guo, Chang Sun, Liang Qu, Manman Shen, Taocun Dou, Meng Ma, Kehua Wang, Ning Yang
Software Mentions: 2
Published: over 7 years ago
10.3389/fgene.2020.00475
Sources of Resistance to Fusarium solani and Associated Genomic Regions in Common Bean Diversity Panels
Cited by: 15
Author(s): Kimberly Zitnick‐Anderson, Atena Oladzad, Shalu Jain, Chryseis Modderman, Juan M. Osorno, Phillip E. McClean, Julie S. Pasche
Software Mentions: 2
Published: over 4 years ago
10.3389/fimmu.2019.00185
Extensive Ethnic Variation and Linkage Disequilibrium at the FCGR2/3 Locus: Different Genetic Associations Revealed in Kawasaki Disease
Cited by: 40
Author(s): Sietse Q. Nagelkerke, Carline E. Tacke, Willemijn B. Breunis, Michael W.T. Tanck, Judy Geissler, Eileen Png, Long Hoàng, Jeroen van der Heijden, Ahmad Nazri Mohamed Naim, Rae S. M. Yeung, Michael Levin, Victoria J. Wright, David Burgner, Anne‐Louise Ponsonby, Justine A. Ellis, Rolando Cimaz, Chisato Shimizu, Jane C. Burns, Karin Fijnvandraat, C. Ellen van der Schoot, Timo K. van den Berg, Martin de Boer, Sonia Dávila, Martin L. Hibberd, Taco W. Kuijpers
Software Mentions: 2
Published: over 5 years ago
10.1186/1471-2164-7-214
P elements and MITE relatives in the whole genome sequence of Anopheles gambiae
Cited by: 32
Author(s): Hadi Quesneville, Danielle Nouaud, Dominique Anxolabéhère
Software Mentions: 2
Published: about 18 years ago
10.3389/fpls.2021.621097
Using Breeding Populations With a Dual Purpose: Cultivar Development and Gene Mapping—A Case Study Using Resistance to Common Bacterial Blight in Dry Bean (Phaseolus vulgaris L.)
Cited by: 6
Author(s): Kristin Simons, Atena Oladzad, Robin S. Lamppa, M Maniruzzaman, Phillip E. McClean, Juan M. Osorno, Julie S. Pasche
Software Mentions: 2
Published: over 3 years ago
10.1186/1471-2180-9-68
Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria
Cited by: 38
Author(s): Lotta Krogius-Kurikka, Anna Kassinen, Lars Paulín, Jukka Corander, Harri Mäkivuokko, Jarno Tuimala, Airi Palva
Software Mentions: 2
Published: over 15 years ago
10.1186/1471-2164-8-218
LTR retrotransposons in rice (Oryza sativa, L.): recent burst amplifications followed by rapid DNA loss
Cited by: 137
Author(s): Clémentine Vitte, Olivier Panaud, Hadi Quesneville
Software Mentions: 2
Published: about 17 years ago
10.1186/1756-3305-2-5
Phlebotomus (Euphlebotomus) barguesae n. sp. from Thailand (Diptera – Psychodidae)
Cited by: 16
Author(s): Jérôme Depaquit, Frédérique Müller, N. Léger
Software Mentions: 2
Published: over 15 years ago
10.3389/fpls.2021.559511
Plastid Phylogenomic Data Offers Novel Insights Into the Taxonomic Status of the Trichosanthes kirilowii Complex (Cucurbitaceae) in South Korea
Cited by: 3
Author(s): Inkyu Park, Junho Song, Sungyu Yang, Sungwook Chae, Byeong Cheol Moon
Software Mentions: 2
Published: about 3 years ago
10.1186/1471-2164-6-8
PCR cloning of a histone H1 gene from Anopheles stephensi mosquito cells: comparison of the protein sequence with histone H1-like, C-terminal extensions on mosquito ribosomal protein S6
Cited by: 5
Author(s): Yongjiao Zhai, Ann M. Fallon
Software Mentions: 2
Published: over 19 years ago
10.1371/journal.pone.0250729
Genome-wide association analysis of bean fly resistance and agro-morphological traits in common bean
Cited by: 7
Author(s): Wilson Nkhata, Hussein Shimelis, Rob Melis, Rowland Chirwa, Tenyson Mzengeza, Isack Mathew, Admire Shayanowako
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0218565
Association between polymorphisms in the SOX9 region and canine disorder of sex development (78,XX; SRY-negative) revisited in a multibreed case-control study
Cited by: 15
Author(s): Joanna Nowacka‐Woszuk, Izabela Szczerbal, Monika Stachowiak, M. Szydłowski, Wojciech Niżański, Stanisław Dzimira, Artur Maslak, Rita Payan-Carreira, Eline Wydooghe, Tomasz Nowak, M. Świtoński
Software Mentions: 2
Published: over 5 years ago
10.1093/cid/ciaa1230
A Genome-wide Association Study Identifies <i>SERPINB10, CRLF3, STX7</i>, <i>LAMP3, IFNG-AS1</i>, and <i>KRT80</i> As Risk Loci Contributing to Cutaneous Leishmaniasis in Brazil
Cited by: 14
Author(s): Léa Castellucci, Lana Carneiro Almeida, Svetlana Cherlin, Michaela Fakiola, Richard W. Francis, Edgar M. Carvalho, Anadílton Santos da Hora, Tainã Lago, Amanda Braga Figueiredo, Clara M Cavalcanti, Natalia Silva Alves, Kátia L.P. Morais, Andréa Teixeira-Carvalho, Walderez O. Dutra, Kenneth J. Gollob, Heather J. Cordell, Jenefer M. Blackwell
Software Mentions: 2
Published: about 4 years ago