Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: beanplot
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/beanplot
Visualization via Beanplots (Like Boxplot/Stripchart/Violin
Plot)
3 versions
Latest release: over 2 years ago
7 dependent packages
3,470 downloads last month
Papers Mentioning beanplot 29
10.1038/s42003-021-02335-3
A de novo transcriptional atlas in Danaus plexippus reveals variability in dosage compensation across tissuesCited by: 9
Author(s): José M. Ranz, Pablo M. González, Bryan D. Clifton, Nestor O. Nazario-Yepiz, Pablo Luis Hernández-Cervantes, María J. Palma-Martínez, Dulce I. Valdivia, Andrés Jiménez-Kaufman, Megan Lu, Therese A. Markow, Cei Abreu‐Goodger
Software Mentions: 13
Published: over 3 years ago
10.1128/mSystems.00316-20
Streamlined and Abundant Bacterioplankton Thrive in Functional CohortsCited by: 8
Author(s): Rhiannon Mondav, Stefan Bertilsson, Moritz Buck, Silke Langenheder, Eva S. Lindström, Sarahi L. Garcia
Software Mentions: 11
Published: about 4 years ago
10.7717/peerj.11370
Ecosystem services show variable responses to future climate conditions in the Colombian páramosCited by: 4
Author(s): Mauricio Diazgranados, Carolina Tovar, Thomas R. Etherington, Paula A. Rodríguez‐Zorro, Carolina Castellanos-Castro, Manuel Galvis Rueda, Suzette G. A. Flantua
Software Mentions: 8
Published: over 3 years ago
10.3389/fpls.2017.01005
Dominant Groups of Potentially Active Bacteria Shared by Barley Seeds become Less Abundant in Root Associated MicrobiomeCited by: 56
Author(s): Luhua Yang, Jasmin Danzberger, Anne Schöler, Peter Schröder, Michael Schloter, Viviane Radl
Software Mentions: 7
Published: over 7 years ago
10.1186/s12864-015-2040-0
Plasmodium parasites mount an arrest response to dihydroartemisinin, as revealed by whole transcriptome shotgun sequencing (RNA-seq) and microarray studyCited by: 27
Author(s): Philip Shaw, Sastra Chaotheing, Pavita Kaewprommal, Jittima Piriyapongsa, Chayaphat Wongsombat, Nattida Suwannakitti, Pongpisid Koonyosying, Chairat Uthaipibull, Yongyuth Yuthavong, Sumalee Kamchonwongpaisan
Software Mentions: 5
Published: about 9 years ago
10.3390/cancers13112592
Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MSCited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0218582
Agricultural impacts on streams near Nitrate Vulnerable Zones: A case study in the Ebro basin, Northern SpainCited by: 8
Author(s): Rubén Ladrera, Óscar Belmar, Rafael Tomás, Narcı́s Prat, Miguel Cañedo‐Argüelles
Software Mentions: 5
Published: about 5 years ago
10.1186/s42523-019-0017-z
Development of the duodenal, ileal, jejunal and caecal microbiota in chickensCited by: 36
Author(s): Laura Glendinning, Kellie Watson, Michael Watson
Software Mentions: 5
Published: about 5 years ago
10.7554/eLife.36741
Convergence between the microcosms of Southeast Asian and North American pitcher plantsCited by: 26
Author(s): Leonora S. Bittleston, Charles J. Wolock, Bakhtiar Effendi Yahya, Xin Yue Chan, Kok Gan Chan, Naomi E. Pierce, Anne Pringle
Software Mentions: 4
Published: about 6 years ago
10.1186/s13058-017-0920-8
Establishing and characterizing patient-derived xenografts using pre-chemotherapy percutaneous biopsy and post-chemotherapy surgical samples from a prospective neoadjuvant breast cancer studyCited by: 53
Author(s): Jia Yu, Bo Qin, Ann M. Moyer, Jason P. Sinnwell, Kevin J. Thompson, John A. Copland, Laura A. Marlow, James L. Miller, Ping Yin, Bowen Gao, Katherine Minter-Dykhouse, Xiaojia Tang, Sarah A. McLaughlin, Alvaro Moreno-Aspitia, Anthony Schweitzer, Yan Lü, J. C. Hubbard, Donald W. Northfelt, Richard Gray, Katie N. Hunt, Amy Lynn Conners, Vera J. Suman, Krishna R. Kalari, James N. Ingle, Zhenkun Lou, Daniel W. Visscher, Richard M. Weinshilboum, Judy C. Boughey, Matthew P. Goetz, Liewei Wang
Software Mentions: 4
Published: almost 7 years ago
10.7717/peerj.3643
Appraisal of unimodal cues during agonistic interactions in <i>Maylandia zebra</i>Cited by: 13
Author(s): Laura Chabrolles, Imen Ben Ammar, Marie Fernandez, Nicolas Boyer, J. Attia, Paulo J. Fonseca, M. Clara P. Amorim, Marilyn Beauchaud
Software Mentions: 4
Published: over 7 years ago
10.3389/fpls.2015.00762
Investigation of the multifunctional gene AOP3 expands the regulatory network fine-tuning glucosinolate production in ArabidopsisCited by: 8
Author(s): Lea Møller Jensen, Daniel J. Kliebenstein, Meike Burow
Software Mentions: 4
Published: about 9 years ago
10.1111/jcmm.15441
Molecular classification and immunologic characteristics of immunoreactive high‐grade serous ovarian cancerCited by: 1
Author(s): Zheran Liu, Huimeng Wu, Jiachen Deng, Haoqing Wang, Zixuan Wang, An‐Gang Yang, Bowen Liang, Ji Luo, Jianyong Li, Ye Xu, Xiaoli Tang, Fang Fu, Libin Deng
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2288-14-13
Reasons for participation and non-participation in a diabetes prevention trial among women with prior gestational diabetes mellitus (GDM)Cited by: 42
Author(s): Jennifer J. Infanti, Angela O’Dea, Irene Gibson, Brian E. McGuire, John Newell, Liam Glynn, Ciarán O’Neill, Susan Connolly, Fidelma Dunne
Software Mentions: 3
Published: almost 11 years ago
10.1371/journal.pone.0177427
Post-translational modifications of FDA-approved plasma biomarkers in glioblastoma samplesCited by: 24
Author(s): Н. А. Петушкова, Victor G. Zgoda, Mikhail A. Pyatnitskiy, О. В. Ларіна, N. B. Teryaeva, А А Потапов, Andrey Lisitsa
Software Mentions: 3
Published: over 7 years ago
10.1038/srep17737
Lipidomics comparing DCD and DBD liver allografts uncovers lysophospholipids elevated in recipients undergoing early allograft dysfunctionCited by: 19
Author(s): Jin Xu, Ana María Casas-Ferreira, Yun Ma, Arundhuti Sen, Min Kim, Petroula Proitsi, Maltina Shkodra, Maria Tena, Parthi Srinivasan, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 3
Published: almost 9 years ago
10.1186/s12944-015-0062-x
Modulation of the lipidomic profile due to a lipid challenge and fitness level: a postprandial studyCited by: 19
Author(s): Ciara Morris, Colm O’Grada, Mary Morgan Ryan, Michael J. Gibney, Helen M. Roche, Eileen R. Gibney, Lorraine Brennan
Software Mentions: 3
Published: over 9 years ago
10.1038/s41598-018-23860-y
Systemic and specific effects of antihypertensive and lipid-lowering medication on plasma protein biomarkers for cardiovascular diseasesCited by: 30
Author(s): Stefan Enroth, Varun Maturi, Malin Berggrund, Sofia Bosdotter Enroth, Aristidis Moustakas, Åsa Johansson, Ulf Gyllensten
Software Mentions: 3
Published: over 6 years ago
10.3389/fimmu.2019.01177
Differential Pathogenic Th17 Profile in Mesenteric Lymph Nodes of Crohn's Disease and Ulcerative Colitis PatientsCited by: 34
Author(s): Marwa Bsat, Laurence Chapuy, Manuel Rubio, Ramsès Wassef, Carole Richard, Frank Schwenter, Rasmy Loungnarath, Geneviève Soucy, Heena Mehta, Marika Sarfati
Software Mentions: 3
Published: over 5 years ago
10.3390/cancers12092439
Preoperative Fasting and General Anaesthesia Alter the Plasma ProteomeCited by: 4
Author(s): Ulf Gyllensten, Sofia Bosdotter Enroth, Karin Stålberg, Karin Sundfeldt, Stefan Enroth
Software Mentions: 3
Published: about 4 years ago
10.1186/gm233
Metabolome in schizophrenia and other psychotic disorders: a general population-based studyCited by: 127
Author(s): Matej Orešič, Jing Tang, Tuulikki Seppänen‐Laakso, Ismo Mattila, Suoma Saarni, Samuli I. Saarni, Jouko Lönnqvist, Marko Sysi-Aho, Tuulia Hyötyläinen, Jonna Perälä, Jaana Suvisaari
Software Mentions: 2
Published: almost 14 years ago
10.1242/dev.166025
Geometrical confinement controls the asymmetric patterning of Brachyury in cultures of pluripotent cellsCited by: 39
Author(s): Guillaume Blin, Darren Wisniewski, Catherine Picart, Manuel Théry, Michel Pucéat, Sally Lowell
Software Mentions: 2
Published: almost 7 years ago
10.1038/s41598-018-31891-8
Improved fragment-based protein structure prediction by redesign of search heuristicsCited by: 12
Author(s): Shaun M. Kandathil, Mario Garza-Fabre, Julia Handl, Simon C. Lovell
Software Mentions: 2
Published: about 6 years ago
10.3389/fncel.2017.00233
Novel Influences of IL-10 on CNS Inflammation Revealed by Integrated Analyses of Cytokine Networks and Microglial MorphologyCited by: 12
Author(s): W. T. Anderson, Andrew D. Greenhalgh, Aditya Takwale, Samuel David, Rajanikanth Vadigepalli
Software Mentions: 2
Published: over 7 years ago
10.1038/srep09537
In situ changes of tropical crustose coralline algae along carbon dioxide gradientsCited by: 92
Author(s): Katharina Fabricius, Anna Kluibenschedl, Lindsay Harrington, Sam H. C. Noonan, Glenn De’ath
Software Mentions: 2
Published: over 9 years ago
10.1098/rsos.170386
Cross-sensory modulation in a future top predator, the young Nile crocodileCited by: 3
Author(s): Laura Chabrolles, Gérard Coureaud, Nicolas Boyer, Nicolas Mathevon, Marilyn Beauchaud
Software Mentions: 1
Published: over 7 years ago
10.3390/biom9100612
Reliable Generation of Native-Like Decoys Limits Predictive Ability in Fragment-Based Protein Structure PredictionCited by: 0
Author(s): Shaun M. Kandathil, Mario Garza-Fabre, Julia Handl, Simon C. Lovell
Software Mentions: 1
Published: about 5 years ago
10.7717/peerj.208
Effects of ocean acidification on the dissolution rates of reef-coral skeletonsCited by: 25
Author(s): Robert van Woesik, Kelly van Woesik, Liana van Woesik, Sandra van Woesik
Software Mentions: 1
Published: about 11 years ago
10.1038/s41598-019-39730-0
Novel blaCTX-M variants and genotype-phenotype correlations among clinical isolates of extended spectrum beta lactamase-producing Escherichia coliCited by: 53
Author(s): A. A. Ramadan, Neveen A. Abdelaziz, Magdy A. Amin, Ramy K. Aziz
Software Mentions: 1
Published: over 5 years ago