Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: demux
Application for demultiplexing sequence data
Papers that mentioned: 37
pypi: heatmapper
Python library for creating heatmap
Papers that mentioned: 37
pypi: multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Papers that mentioned: 37
pypi: mapping
Mappings for generic and tradeable futures instruments
Papers that mentioned: 37
pypi: p
Aliases any available project commands or scripts to `p <name>`.
Papers that mentioned: 37
pypi: genome

Papers that mentioned: 36
pypi: visualizer
Automate the process of visualization
Papers that mentioned: 36
pypi: fastcluster
Fast hierarchical clustering routines for R and Python.
Papers that mentioned: 36
pypi: annotate
Decorator to set a function's __annotations__ like Py3.
Papers that mentioned: 36
pypi: tseries
A package for analyzing time series with scikit-learn
Papers that mentioned: 36
pypi: splits
A library for dealing with splittable files
Papers that mentioned: 36
pypi: salmon
A simple metric collector with alerts.
Papers that mentioned: 36
pypi: dPCA
Implements Demixed Principal Components Analysis
Papers that mentioned: 36
pypi: nltk
Natural Language Toolkit
Papers that mentioned: 36
pypi: gff3
Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files.
Papers that mentioned: 36
pypi: minet
A webmining CLI tool & library for python.
Papers that mentioned: 36
pypi: sed
Streaming editor toolkit
Papers that mentioned: 36
pypi: s
The almighty S-package
Papers that mentioned: 36
pypi: nose
nose extends unittest to make testing easier
Papers that mentioned: 36
pypi: NEB
Namespace package for NEB projects.
Papers that mentioned: 36
pypi: optim
Playground for optimizers.
Papers that mentioned: 36
pypi: PyQt5
Python bindings for the Qt cross platform application toolkit
Papers that mentioned: 36
pypi: RO
Collection of utilities including general algorithms, astronomical transformations and Tkinter widgets
Papers that mentioned: 36
pypi: Minerva
Robust Comet server and client built on Twisted and Closure Library
Papers that mentioned: 36
pypi: utils
A grab-bag of utility functions and objects
Papers that mentioned: 35
pypi: run
Python Process Run Control
Papers that mentioned: 35
pypi: HARP

Papers that mentioned: 35
pypi: sandwich
sudo make_me_a_sandwich.
Papers that mentioned: 35
pypi: MultiPoint
WLC Structure Factor
Papers that mentioned: 35
pypi: READemption
A RNA-Seq Analysis Pipeline
Papers that mentioned: 35
pypi: propy
Library of class property creation functions for type conversion and validation.
Papers that mentioned: 35
pypi: liftover
Package for converting between genome build coordinates
Papers that mentioned: 34
pypi: predictor
Serve up scikit-learn models for prediction
Papers that mentioned: 34
pypi: analyst
Data analysis toolkit
Papers that mentioned: 34
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
pypi: vg
Linear algebra for humans: a very good vector-geometry and linear-algebra toolbelt
Papers that mentioned: 34
pypi: hyperopt
Distributed Asynchronous Hyperparameter Optimization
Papers that mentioned: 34
pypi: class
A simple class!
Papers that mentioned: 34
pypi: pyFAI
Python implementation of fast azimuthal integration
Papers that mentioned: 34
pypi: Medea
JSON Object Mapper / Encoder
Papers that mentioned: 34
pypi: zt
util
Papers that mentioned: 34
pypi: ca

Papers that mentioned: 34
pypi: NMODL
NEURON Modeling Language Source-to-Source Compiler Framework
Papers that mentioned: 34
pypi: qcat
Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files
Papers that mentioned: 34
pypi: fields
Container class boilerplate killer.
Papers that mentioned: 34
pypi: R4
R4 is a python package for encrypt your important data
Papers that mentioned: 33
pypi: toolkit
toolkit for script and utils
Papers that mentioned: 33
pypi: panther
Fast & Friendly, Web Framework For Building Async APIs
Papers that mentioned: 33
pypi: dlib
A toolkit for making real world machine learning and data analysis applications
Papers that mentioned: 33
pypi: diff
"You diff objects, you find out why they ain't the same."
Papers that mentioned: 33
pypi: Record
Special Record objects used in Zope.
Papers that mentioned: 33
pypi: modeller
create efficent models starting from json schema
Papers that mentioned: 33
pypi: TPOT
Tree-based Pipeline Optimization Tool
Papers that mentioned: 33
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
pypi: jellyfish
Approximate and phonetic matching of strings.
Papers that mentioned: 33
pypi: config
A hierarchical, easy-to-use, powerful configuration module for Python
Papers that mentioned: 33
pypi: PPA
Python Publishing Accessories (PPA) is a library of python modules useful to build web publication systems
Papers that mentioned: 33
pypi: forcats
Tools for working with pandas categoricals
Papers that mentioned: 33
pypi: LFPy
A module for modeling extracellular potentials of multicompartment neuron models built on NEURON
Papers that mentioned: 33
pypi: CellNet

Papers that mentioned: 33
pypi: diversitree

Papers that mentioned: 33
pypi: miner
UNKNOWN
Papers that mentioned: 33
pypi: cell
Kombu actor framework
Papers that mentioned: 33
pypi: eclipse
A simplified and extended version of OpenAI's Contrastive Language-Image Pretraining
Papers that mentioned: 33
pypi: data
Work with unicode/non-unicode data from files or strings uniformly.
Papers that mentioned: 33
pypi: autobuild
Linden Lab Automated Package Management and Build System
Papers that mentioned: 32
pypi: ingenuity

Papers that mentioned: 32
pypi: AST
Conversion between protobuf3 and srcML.
Papers that mentioned: 32
pypi: 8
For future projects.
Papers that mentioned: 32
pypi: BATS
https://github.com/ContaTP/BATS-Bayesian-Adaptive-Trial-Simulator
Papers that mentioned: 32
pypi: HAL
Powerful AI Framework
Papers that mentioned: 32
pypi: Optimus
Optimus is a static site builder using Jinja2, webassets and Babel.
Papers that mentioned: 32
pypi: opm
OPM-Common Python bindings
Papers that mentioned: 32
pypi: JIT
This is a package for my just in time
Papers that mentioned: 32
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32
pypi: funannotate
funannotate: eukaryotic genome annotation pipeline
Papers that mentioned: 32
pypi: PIPS
Python Interior Point Solver
Papers that mentioned: 32
pypi: jtools
A Python module that aids filtering, formatting, and transforming JSON-like objects
Papers that mentioned: 32
pypi: scanner
Scanner is like Ruby's StringScanner
Papers that mentioned: 32
pypi: MCP
A program to orchestrate Entellect Challenge bot matches.
Papers that mentioned: 32
pypi: detection
A motion detector
Papers that mentioned: 32
pypi: galaxy
Galaxy (http://galaxyproject.org/).
Papers that mentioned: 32
pypi: ineq
Package to calculate and plot income distribution indexes
Papers that mentioned: 32
pypi: graphviz
Simple Python interface for Graphviz
Papers that mentioned: 32
pypi: xtable
operate table format in console. console table, csv, json, yaml and markdown.
Papers that mentioned: 32
pypi: GroopM
Metagenomic binning suite
Papers that mentioned: 32
pypi: Mantid
A simple, multi-project issue tracker.
Papers that mentioned: 32
pypi: Tachyon
Fast Sum Product Network Library
Papers that mentioned: 32
pypi: fsl
Specification language for selecting files from directory tree
Papers that mentioned: 32
pypi: acpype
ACPYPE - AnteChamber PYthon Parser interfacE
Papers that mentioned: 32
pypi: Cactus
Static site generation and deployment.
Papers that mentioned: 32
pypi: sem
A Simulation Execution Manager for ns-3
Papers that mentioned: 32
pypi: tnet
Torch and torchnet like library for building and training neural networks in Theano
Papers that mentioned: 32
pypi: b
ccccccccccc
Papers that mentioned: 31
pypi: colorspace
A small collection of hex-colors.
Papers that mentioned: 31
pypi: design
Generates various common web design elements. Borders, patterns, textures, gradients, etc.
Papers that mentioned: 31
pypi: meme
Use the command line to generate memes on memegenerator.co
Papers that mentioned: 31
pypi: BDS

Papers that mentioned: 31
pypi: MMTK
Molecular Modelling Toolkit
Papers that mentioned: 31
pypi: mpi4py
Python bindings for MPI
Papers that mentioned: 31