pypi: HAL | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1008605

Machine learning based CRISPR gRNA design for therapeutic exon skipping
Cited by: 5
Author(s): Wilson Louie, Max W. Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A. Cassa, Richard I. Sherwood, David K. Gifford
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pgen.1009027

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD
Cited by: 5
Author(s): Christian Groß, Chiara Bortoluzzi, Dick de Ridder, Hendrik‐Jan Megens, Martien A. M. Groenen, Marcel J. T. Reinders, Mirte Bosse
Software Mentions: 6
Published: almost 4 years ago

10.3389/fcell.2020.00673

Named Entity Recognition and Relation Detection for Biomedical Information Extraction
Cited by: 63
Author(s): Nadeesha Perera, Matthias Dehmer, Frank Emmert‐Streib
Software Mentions: 5
Published: about 4 years ago

10.3389/fpsyg.2016.01646

Predicting Lexical Priming Effects from Distributional Semantic Similarities: A Replication with Extension
Cited by: 6
Author(s): Fritz Günther, Carolin Dudschig, Barbara Kaup
Software Mentions: 5
Published: almost 8 years ago

10.1002/ece3.7204

Climatic change drives dynamic source–sink relationships in marine species with high dispersal potential
Cited by: 4
Author(s): Catarina N. S. Silva, Elaine Young, Nicholas P. Murphy, James J. Bell, Bridget S. Green, Simon A. Morley, Guy Duhamel, A. C. Cockcroft, Jan M. Strugnell
Software Mentions: 4
Published: over 3 years ago

10.1186/s13073-021-00835-9

CADD-Splice—improving genome-wide variant effect prediction using deep learning-derived splice scores
Cited by: 294
Author(s): Philipp Rentzsch, Max Schubach, Jay Shendure, Martin Kircher
Software Mentions: 4
Published: over 3 years ago

10.1186/s12915-020-00797-1

The roles of hybridization and habitat fragmentation in the evolution of Brazil’s enigmatic longwing butterflies, Heliconius nattereri and H. hermathena
Cited by: 14
Author(s): Darli Massardo, Nicholas W. VanKuren, Sumitha Nallu, Renato Rogner Ramos, Pedro G. Ribeiro, Karina Lucas Silva‐Brandão, Marcelo Mendes Brandão, Marília Bruzzi Lion, André Victor Lucci Freitas, Márcio Zikán Cardoso, Marcus R. Kronforst
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0078858

Comparative and Phylogenomic Evidence That the Alphaproteobacterium HIMB59 Is Not a Member of the Oceanic SAR11 Clade
Cited by: 33
Author(s): Jenny Viklund, Joran Martijn, Thijs J. G. Ettema, Siv G. E. Andersson
Software Mentions: 3
Published: almost 11 years ago

10.1186/s13059-019-1653-z

MMSplice: modular modeling improves the predictions of genetic variant effects on splicing
Cited by: 122
Author(s): Jianghua Cheng, Thi Yen Duong Nguyen, Kamil J. Cygan, Muhammed Hasan Çelik, William G. Fairbrother, Žiga Avsec
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-016-3083-6

De-novo transcriptome assembly for gene identification, analysis, annotation, and molecular marker discovery in Onobrychis viciifolia
Cited by: 30
Author(s): Marina Mora-Ortiz, Martin Swain, Martin Vickers, Matthew J. Hegarty, Rhys Kelly, Lydia Smith, Leif Skøt
Software Mentions: 3
Published: almost 8 years ago

10.1093/molbev/msz113

Fitness Landscape of the Fission Yeast Genome
Cited by: 12
Author(s): Leanne Grech, Daniel C. Jeffares, Christoph Sadée, María Rodríguez-López, Danny A. Bitton, Mimoza Hoti, Carolina Biagosch, Dimitra Aravani, Maarten Speekenbrink, Christopher J. R. Illingworth, Philipp H. Schiffer, Alison L. Pidoux, Pin Tong, Juan Jiménez, Robin C. Allshire, Henry L. Levin, Jürg Bähler
Software Mentions: 2
Published: over 5 years ago

10.5194/acp-19-15321-2019

Impact of halogen chemistry on summertime air quality in coastal and continental Europe: application of the CMAQ model and implications for regulation
Cited by: 12
Author(s): Qinyi Li, Rafael Borge, Golam Sarwar, David de la Paz, B. Gantt, Jessica Domingo, Carlos A. Cuevas, Alfonso Saiz‐Lopez
Software Mentions: 2
Published: almost 5 years ago

10.1093/gigascience/giaa047

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
Cited by: 8
Author(s): Ksenia Krasheninnikova, Mark Diekhans, Joel Armstrong, Aleksei Dievskii, Benedict Paten, Stephen J. O’Brien
Software Mentions: 2
Published: over 4 years ago

10.1093/bioinformatics/btt128

HAL: a hierarchical format for storing and analyzing multiple genome alignments
Cited by: 143
Author(s): Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pgen.1009284

A rare coding mutation in the MAST2 gene causes venous thrombosis in a French family with unexplained thrombophilia: The Breizh MAST2 Arg89Gln variant
Cited by: 4
Author(s): Pierre‐Emmanuel Morange, Franck Peiretti, Lénaïck Gourhant, Carole Proust, Omar Soukarieh, Anne-Sophie Pulcrano-Nicolas, Ganapathi-Varma Saripella, Luca Stefanucci, Romaric Lacroix, Manal Ibrahim‐Kosta, Catherine A. Lemarié, Mattia Frontini, Marie‐Christine Alessi, David‐Alexandre Trégouët, Francis Couturaud
Software Mentions: 2
Published: over 3 years ago

10.1186/s12864-015-1777-9

The genome of the truffle-parasite Tolypocladium ophioglossoides and the evolution of antifungal peptaibiotics
Cited by: 41
Author(s): C. Alisha Quandt, Kathryn E. Bushley, Joseph W. Spatafora
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0023973

One Carbon Metabolism in SAR11 Pelagic Marine Bacteria
Cited by: 164
Author(s): Jing Sun, Laura Steindler, J. Cameron Thrash, Kimberly H. Halsey, Daniel P. Smith, Amy E. Carter, Zachary C. Landry, Stephen J. Giovannoni
Software Mentions: 2
Published: about 13 years ago

10.1371/journal.pcbi.1007635

Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization
Cited by: 55
Author(s): Rafael Bravo, Etienne Baratchart, Jeffrey West, Ryan O. Schenck, Anna K. Miller, Jill Gallaher, Chandler D. Gatenbee, David Basanta, Mark Robertson-Tessi, Alexander R.A. Anderson
Software Mentions: 2
Published: over 4 years ago

10.3390/s140101705

Wearable Gait Measurement System with an Instrumented Cane for Exoskeleton Control
Cited by: 80
Author(s): Modar Hassan, Hideki Kadone, Kenji Suzuki, Yoshiyuki Sankai
Software Mentions: 2
Published: over 10 years ago

10.3390/s16050597

Streetlight Control System Based on Wireless Communication over DALI Protocol
Cited by: 29
Author(s): F.J. Bellido-Outeiriño, Francisco Javier Quiles-Latorre, Carlos D. Moreno-Moreno, J.M. Flores-Arias, Isabel M. Moreno-Garcia, Manuel Ortíz-López
Software Mentions: 2
Published: over 8 years ago

10.1155/2017/9053630

An Open-Structure Treadmill Gait Trainer: From Research to Application
Cited by: 1
Author(s): Jian Jian Li, Diansheng Chen, Yubo Fan
Software Mentions: 1
Published: over 7 years ago

10.1155/2018/7847014

Dynamic Balance Gait for Walking Assistance Exoskeleton
Cited by: 24
Author(s): Qiming Chen, Hong Cheng, Chunfeng Yue, Rui Huang, Hongliang Guo
Software Mentions: 1
Published: about 6 years ago

10.31372/20180304.1022

Can Nursing Drive Technological Advances in Healthcare in the Asia- Pacific?
Cited by: 4
Author(s): Joseph Andrew Pepito, Rozzano C. Locsin
Software Mentions: 1
Published: over 6 years ago

10.1186/1471-2105-7-536

TaxMan: a taxonomic database manager
Cited by: 6
Author(s): Martin O. Jones, Mark Blaxter
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2105-13-S11-S6

Semantically linking molecular entities in literature through entity relationships
Cited by: 13
Author(s): Sofie Van Landeghem, Jari Björne, Thomas Abeel, Bernard De Baets, Tapio Salakoski, Yves Van de Peer
Software Mentions: 1
Published: over 12 years ago

Ecosyste.ms: Papers

Projects: pypi: HAL

Papers Mentioning HAL 32