pypi: optim | Projects | Ecosyste.ms: Papers

10.1371/journal.pone.0146021

Dose-Response Analysis Using R
Cited by: 2,013
Author(s): Christian Ritz, Florent Baty, J. C. Streibig, Daniel Gerhard
Software Mentions: 20
Published: almost 9 years ago

10.1186/s12859-020-3389-x

ushr: Understanding suppression of HIV in R
Cited by: 3
Author(s): Sinead E. Morris, Luise Dziobek-Garrett, Andrew J. Yates
Software Mentions: 8
Published: almost 5 years ago

lme4GS: An R-Package for Genomic Selection
Cited by: 8
Author(s): Diana Caamal-Pat, Paulino Pérez‐Rodríguez, José Crossa, Ciro Velasco‐Cruz, Sergio Pérez-Elizalde, Mario Alberto Vázquez-Peña
Software Mentions: 8
Published: over 3 years ago

10.3389/fpsyg.2020.484737

Comparing Eight Parameter Estimation Methods for the Ratcliff Diffusion Model Using Free Software
Cited by: 5
Author(s): Rainer W. Alexandrowicz, Bartosz Gula
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0188966

AMModels: An R package for storing models, data, and metadata to facilitate adaptive management
Cited by: 2
Author(s): Therese M. Donovan, Jonathan E. Katz
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pcbi.1007230

FAMoS: A Flexible and dynamic Algorithm for Model Selection to analyse complex systems dynamics
Cited by: 6
Author(s): Michael Gabel, Tobias M. Hohl, Andrea Imle, Oliver T. Fackler, Frederik Graw
Software Mentions: 6
Published: over 5 years ago

10.1007/s10237-021-01520-x

Spatiotemporal modeling of first and second wave outbreak dynamics of COVID-19 in Germany
Cited by: 10
Author(s): Dorothee Lippold, Andreas Kergaßner, Christian Burkhardt, Matthias Kergaßner, Jonas Loos, Sarah Nistler, Paul Steinmann, Dominik Budday, Silvia Budday
Software Mentions: 6
Published: about 3 years ago

10.3390/ma13132960

Automatic Crack Detection on Road Pavements Using Encoder-Decoder Architecture
Cited by: 63
Author(s): Zhun Fan, Chong Li, Ying Chen, Jiahong Wei, Giuseppe Loprencipe, Xiaopeng Chen, Paola Di Mascio
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0216129

Efficient estimation of generalized linear latent variable models
Cited by: 45
Author(s): Jenni Niku, Wesley Brooks, Riki Herliansyah, Francis K. C. Hui, Sara Taskinen, David I. Warton
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pntd.0009106

Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh
Cited by: 14
Author(s): Ayesha S. Mahmud, Iqbal Kabir, Kenth Engø‐Monsen, Sania Tahmina, Baizid Khoorshid Riaz, Akram Hossain, Fahmida Khanom, Mujibor Rahman, Khalilur Rahman, Mehruba Sharmin, Dewan Mashrur Hossain, Shakila Yasmin, Mostafa Ahmed, Mirza Afreen Fatima Lusha, Caroline O. Buckee
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0249037

A statistical analysis of the novel coronavirus (COVID-19) in Italy and Spain
Cited by: 46
Author(s): Jeffrey Chu
Software Mentions: 3
Published: over 3 years ago

10.1002/ece3.1117

A general model of intra‐annual tree growth using dendrometer bands
Cited by: 34
Author(s): Sean M. McMahon, Geoffrey G. Parker
Software Mentions: 2
Published: almost 10 years ago

10.1098/rsbl.2016.0273

Estimating shifts in diversification rates based on higher-level phylogenies
Cited by: 7
Author(s): Tanja Stadler, Smrckova Jana
Software Mentions: 2
Published: about 8 years ago

10.3389/fnhum.2015.00119

Modeling violations of the race model inequality in bimodal paradigms: co-activation from decision and non-decision components
Cited by: 3
Author(s): Michael Zehetleitner, Emil Ratko-Dehnert, Hermann J. Müller
Software Mentions: 2
Published: over 9 years ago

10.3389/fimmu.2019.00598

Spatiotemporal Modeling of the Key Migratory Events During the Initiation of Adaptive Immunity
Cited by: 13
Author(s): Alan Hayes, Sanket Rane, Hannah E. Scales, Gavin R. Meehan, Robert A. Benson, Asher Maroof, Joanna L. Schroeder, Michio Tomura, Neil Gozzard, Andrew J. Yates, Paul Garside, James M. Brewer
Software Mentions: 2
Published: over 5 years ago

10.3389/fpls.2020.00712

SUGAR Model-Assisted Analysis of Carbon Allocation and Transformation in Tomato Fruit Under Different Water Along With Potassium Conditions
Cited by: 11
Author(s): Anrong Luo, Shaozhong Kang, Jinliang Chen
Software Mentions: 2
Published: over 4 years ago

10.3389/fpsyg.2015.01038

Incorporating measurement error in n = 1 psychological autoregressive modeling
Cited by: 44
Author(s): Noémi Katalin Schuurman, Jan H. Houtveen, Ellen L. Hamaker
Software Mentions: 2
Published: over 9 years ago

10.1038/s41598-017-05957-y

An ecological and digital epidemiology analysis on the role of human behavior on the 2014 Chikungunya outbreak in Martinique
Cited by: 17
Author(s): Benjamín Roche, Béatrice Gaillard, Lucas Léger, Renélise Pelagie-Moutenda, Thomas Sochacki, Bernard Cazelles, Martine Ledrans, Alain Blateau, Didier Fontenille, Manuel Étienne, Frédéric Simard, Marcel Salathé, André Yébakima
Software Mentions: 2
Published: over 7 years ago

10.1186/s13071-016-1292-0

Feasibility of eliminating visceral leishmaniasis from the Indian subcontinent: explorations with a set of deterministic age-structured transmission models
Cited by: 44
Author(s): Epke A. Le Rutte, Luc E. Coffeng, D.M. Bontje, Epco Hasker, Jorge Postigo, Daniel Argaw, Marleen Boelaert, Sake J. de Vlas
Software Mentions: 2
Published: almost 9 years ago

10.7717/peerj.4262

RBiomirGS: an all-in-one miRNA gene set analysis solution featuring target mRNA mapping and expression profile integration
Cited by: 17
Author(s): Jing Zhang, Kenneth B. Storey
Software Mentions: 2
Published: almost 7 years ago

10.1002/ece3.6926

gauseR: Simple methods for fitting Lotka‐Volterra models describing Gause’s “Struggle for Existence”
Cited by: 15
Author(s): Lina Mühlbauer, Maximilienne Schulze, W. Stanley Harpole, Adam Thomas Clark
Software Mentions: 2
Published: about 4 years ago

10.1186/s13063-016-1383-4

Assessment of learning curves in complex surgical interventions: a consecutive case-series study
Cited by: 45
Author(s): Olympia Papachristofi, David P. Jenkins, Linda D. Sharples
Software Mentions: 1
Published: over 8 years ago

10.1186/1471-2334-14-427

Surveillance of low pathogenic novel H7N9 avian influenza in commercial poultry barns: detection of outbreaks and estimation of virus introduction time
Cited by: 6
Author(s): Amy Pinsent, Isobel M. Blake, Michael T. White, Steven Riley
Software Mentions: 1
Published: over 10 years ago

10.1186/s12911-018-0659-x

A comparative study of logistic regression based machine learning techniques for prediction of early virological suppression in antiretroviral initiating HIV patients
Cited by: 32
Author(s): Kuteesa R. Bisaso, Susan Karungi, Agnes Kiragga, Jackson Mukonzo, Barbara Castelnuovo
Software Mentions: 1
Published: about 6 years ago

10.1186/1471-2180-13-25

Quantitative analysis of persister fractions suggests different mechanisms of formation among environmental isolates of E. coli
Cited by: 65
Author(s): Niels Hofsteenge, Erik van Nimwegen, Olin K. Silander
Software Mentions: 1
Published: almost 12 years ago

10.1371/journal.pbio.3000551

Coinfections by noninteracting pathogens are not independent and require new tests of interaction
Cited by: 24
Author(s): Frédéric Hamelin, Linda J. S. Allen, Vrushali A. Bokil, Louis J. Gross, Frank M. Hilker, Michael Jeger, Carrie Manore, Alison G. Power, Megan A. Rúa, Nik J. Cunniffe
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pone.0112648

Did School Food and Nutrient-Based Standards in England Impact on 11–12Y Olds Nutrient Intake at Lunchtime and in Total Diet? Repeat Cross-Sectional Study
Cited by: 17
Author(s): Suzanne Spence, J. Delve, Elaine Stamp, J. N. S. Matthews, Martin White, Ashley J. Adamson
Software Mentions: 1
Published: about 10 years ago

10.1371/journal.pone.0110679

Association Studies with Imputed Variants Using Expectation-Maximization Likelihood-Ratio Tests
Cited by: 1
Author(s): Kuan Huang, Wei Sun, Ying Wu, Mengjie Chen, Karen L. Mohlke, Leslie A. Lange, Yun Li
Software Mentions: 1
Published: about 10 years ago

10.1155/2020/4296806

Comparison of COVID-19 Pandemic Dynamics in Asian Countries with Statistical Modeling
Cited by: 24
Author(s): M. Lei J. Zuo, Saima K. Khosa, Zubair Ahmad, Zahra Almaspoor
Software Mentions: 1
Published: over 4 years ago

10.1016/j.dcn.2019.100749

Pubertal testosterone correlates with adolescent impatience and dorsal striatal activity
Cited by: 15
Author(s): Corinna Laube, Robert C. Lorenz, Wouter van den Bos
Software Mentions: 1
Published: over 4 years ago

10.1080/22221751.2018.1563456

Simultaneous outbreaks of respiratory disease in wild chimpanzees caused by distinct viruses of human origin
Cited by: 72
Author(s): Jacob D. Negrey, Rachna B. Reddy, Erik J. Scully, Sarah Phillips-Garcia, L. Owens, Kevin E. Langergraber, John C. Mitani, Melissa Emery Thompson, Richard W. Wrangham, Martin N. Muller, Emily Otali, Zarin Machanda, David Holzmann, Kristine A. Grindle, T.E. Pappas, Ann C. Palmenberg, James E. Gern, Tony L. Goldberg
Software Mentions: 1
Published: almost 6 years ago

10.3390/e23010053

Expectation-Maximization Algorithm for the Calibration of Complex Simulator Using a Gaussian Process Emulator
Cited by: 1
Author(s): Yun Am Seo, Jeong‐Soo Park
Software Mentions: 1
Published: almost 4 years ago

10.1093/gbe/evz197

A High-Resolution View of Adaptive Event Dynamics in a Plasmid
Cited by: 10
Author(s): Mei Han, Barbara Arbeithuber, Marzia A. Cremona, Michael DeGiorgio, Anton Nekrutenko
Software Mentions: 1
Published: about 5 years ago

10.1038/s41598-017-07488-y

Low-dose cryo electron ptychography via non-convex Bayesian optimization
Cited by: 57
Author(s): Philipp Pelz, Wen Xuan Qiu, Robert Bücker, Günther Kassier, R. J. Dwayne Miller
Software Mentions: 1
Published: about 7 years ago

10.1038/s41598-020-64839-y

A new framework for growth curve fitting based on the von Bertalanffy Growth Function
Cited by: 12
Author(s): Laura Lee, David Atkinson, Andrew G. Hirst, Stephen J. Cornell
Software Mentions: 1
Published: over 4 years ago

10.3390/s21124161

Quantitative and Comparative Analysis of Effectivity and Robustness for Enhanced and Optimized Non-Local Mean Filter Combining Pixel and Patch Information on MR Images of Musculoskeletal System
Cited by: 0
Author(s): Jan Kubíček, Michal Strycek, Martin Černý, Marek Penhaker, Ondrej Prokop, Dominik Vilímek
Software Mentions: 1
Published: over 3 years ago

Ecosyste.ms: Papers

Projects: pypi: optim

Papers Mentioning optim 36