pypi: READemption | Projects | Ecosyste.ms: Papers

10.3389/fmicb.2020.00523

Differences in the Transcriptomic Response of Campylobacter coli and Campylobacter lari to Heat Stress
Cited by: 13
Author(s): Carolin Riedel, Konrad U. Förstner, Christoph Püning, Thomas Alter, Cynthia M. Sharma, Greta Gölz
Software Mentions: 6
Published: over 4 years ago

10.3389/fcimb.2020.600325

Single-Nucleotide RNA Maps for the Two Major Nosocomial Pathogens Enterococcus faecalis and Enterococcus faecium
Cited by: 12
Author(s): Charlotte Michaux, Elisabeth E Hansen, Laura Jenniches, Milan Gerovac, Lars Barquist, Jörg Vogel
Software Mentions: 5
Published: almost 4 years ago

10.15252/embj.2019103852

Grad‐seq in a Gram‐positive bacterium reveals exonucleolytic <scp>sRNA</scp> activation in competence control
Cited by: 47
Author(s): Jens Hör, Geneviève Garriss, Silvia Di Giorgio, Lisa-Marie Hack, Jens T. Vanselow, Konrad U. Förstner, Andreas Schlösser, Birgitta Henriques‐Normark, Jörg Vogel
Software Mentions: 5
Published: over 4 years ago

10.1186/s12864-019-5892-x

Carriage of Shiga toxin phage profoundly affects Escherichia coli gene expression and carbon source utilization
Cited by: 25
Author(s): Petya Berger, Ivan U. Kouzel, Michael Berger, Nadja Haarmann, Ulrich Dobrindt, Gerald B. Koudelka, Alexander Mellmann
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0215986

Characterization of the transcriptome of Haloferax volcanii, grown under four different conditions, with mixed RNA-Seq
Cited by: 27
Author(s): Sebastian Laaß, Vivian Monzon, Jana Kliemt, M Hammelmann, Friedhelm Pfeiffer, Konrad U. Förstner, Jörg Soppa
Software Mentions: 4
Published: over 5 years ago

10.1186/s12864-021-07409-4

Impact of PNPase on the transcriptome of Rhodobacter sphaeroides and its cooperation with RNase III and RNase E
Cited by: 7
Author(s): Daniel-Timon Spanka, Carina M. Reuscher, Gabriele Klug
Software Mentions: 4
Published: almost 4 years ago

10.1128/mBio.02504-18

The Major RNA-Binding Protein ProQ Impacts Virulence Gene Expression in Salmonella enterica Serovar Typhimurium
Cited by: 73
Author(s): Alexander J. Westermann, Elisa Venturini, Mikael E. Sellin, Konrad U. Förstner, Wolf‐Dietrich Hardt, Jörg Vogel
Software Mentions: 4
Published: over 5 years ago

10.26508/lsa.201800080

RNase E cleavage shapes the transcriptome ofRhodobacter sphaeroidesand strongly impacts phototrophic growth
Cited by: 20
Author(s): Konrad U. Förstner, Carina M. Reuscher, Kerstin Haberzettl, Lennart Weber, Gabriele Klug
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.28023

Cell differentiation defines acute and chronic infection cell types in Staphylococcus aureus
Cited by: 53
Author(s): Juan Carlos García-Betancur, Ángel Goñi-Moreno, Thomas Horger, Melanie Schott, Malvika Sharan, Julian Eikmeier, Barbara Wohlmuth, Alma Zernecke, Knut Ohlsen, Christina Kuttler, Daniel López
Software Mentions: 3
Published: about 7 years ago

10.3389/fmicb.2018.00929

The Probiotic Escherichia coli Strain Nissle 1917 Combats Lambdoid Bacteriophages stx and λ
Cited by: 17
Author(s): Susanne Bury, Manonmani Soundararajan, Richa Bharti, Rudolf von Bünau, Konrad U. Förstner, Tobias A. Oelschlaeger
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2018.01473

A New Bioactive Compound From the Marine Sponge-Derived Streptomyces sp. SBT348 Inhibits Staphylococcal Growth and Biofilm Formation
Cited by: 17
Author(s): Srikkanth Balasubramanian, Joseph Skaf, Ulrike Holzgrabe, Richa Bharti, Konrad U. Förstner, Wilma Ziebuhr, Ute Hentschel, Usama Ramadan Abdelmohsen, Tobias A. Oelschlaeger
Software Mentions: 3
Published: over 6 years ago

10.3389/fmicb.2019.01181

Induced Pluripotent Stem Cell-Derived Brain Endothelial Cells as a Cellular Model to Study Neisseria meningitidis Infection
Cited by: 35
Author(s): Sara F. Martins Gomes, Alexander J. Westermann, Till Sauerwein, Tobias Hertlein, Konrad U. Förstner, Knut Ohlsen, Marco Metzger, Eric V. Shusta, Brandon J. Kim, Antje Appelt‐Menzel, Alexandra Schubert‐Unkmeir
Software Mentions: 3
Published: over 5 years ago

10.1093/gigascience/giy096

ANNOgesic: a Swiss army knife for the RNA-seq based annotation of bacterial/archaeal genomes
Cited by: 44
Author(s): Sung-Huan Yu, Jörg Vogel, Konrad U. Förstner
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.ppat.1006033

Resolving host–pathogen interactions by dual RNA-seq
Cited by: 201
Author(s): Alexander J. Westermann, Lars Barquist, Jörg Vogel
Software Mentions: 3
Published: almost 8 years ago

10.1128/mBio.00813-16

Effect of Shear Stress on Pseudomonas aeruginosa Isolated from the Cystic Fibrosis Lung
Cited by: 24
Author(s): Jozef Dingemans, Pieter Monsieurs, Sung-Huan Yu, Aurélie Crabbé, Konrad U. Förstner, Anne Malfroot, Pierre Cornélis, Rob Van Houdt
Software Mentions: 3
Published: about 8 years ago

10.1128/mSystems.00590-19

Conditional Hfq Association with Small Noncoding RNAs in Pseudomonas aeruginosa Revealed through Comparative UV Cross-Linking Immunoprecipitation Followed by High-Throughput Sequencing
Cited by: 14
Author(s): Kotaro Chihara, Thorsten Bischler, Lars Barquist, Vivian Monzon, Naohiro Noda, Jörg Vogel, Satoshi Tsuneda
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-15-794

Role of oxygen and the OxyR protein in the response to iron limitation in Rhodobacter sphaeroides
Cited by: 39
Author(s): Bernhard Remes, Bork A. Berghoff, Konrad U. Förstner, Gabriele Klug
Software Mentions: 3
Published: about 10 years ago

10.1186/1471-2164-15-684

Primary transcriptome map of the hyperthermophilic archaeon Thermococcus kodakarensis
Cited by: 83
Author(s): Dominik Jäger, Konrad U. Förstner, Cynthia M. Sharma, Thomas J. Santangelo, John N. Reeve
Software Mentions: 2
Published: almost 11 years ago

10.3389/fmicb.2015.01373

Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression
Cited by: 18
Author(s): Ebrahim M. Abda, Dagmar Krysciak, Ines Krohn-Molt, Uwe Mamat, Christel Schmeisser, Konrad U. Förstner, Ulrich E. Schaible, Thomas A. Kohl, Stefan Nieman, Wolfgang R. Streit
Software Mentions: 2
Published: almost 9 years ago

10.1128/mBio.02041-16

Transcription Profiling of Bacillus subtilis Cells Infected with AR9, a Giant Phage Encoding Two Multisubunit RNA Polymerases
Cited by: 25
Author(s): Daria Lavysh, Maria L. Sokolova, Marina Slashcheva, Konrad U. Förstner, Konstantin Severinov
Software Mentions: 2
Published: over 7 years ago

10.1186/s12864-019-6292-y

Efficient depletion of ribosomal RNA for RNA sequencing in planarians
Cited by: 22
Author(s): Iana V Kim, E. J. Ross, Sascha Dietrich, Kristina Döring, Alejandro Sánchez Alvarado, Claus-D. Kuhn
Software Mentions: 2
Published: almost 5 years ago

10.3390/microorganisms9091888

RNA-Seq Provides New Insights into the Gene Expression Changes in Azoarcus olearius BH72 under Nitrogen-Deficient and Replete Conditions beyond the Nitrogen Fixation Process
Cited by: 4
Author(s): Shanmugam Solaiyappan Mani, Barbara Reinhold‐Hurek
Software Mentions: 2
Published: about 3 years ago

10.1371/journal.pone.0178483

ToNER: A tool for identifying nucleotide enrichment signals in feature-enriched RNA-seq data
Cited by: 4
Author(s): Yuttachon Promworn, Pavita Kaewprommal, Philip Shaw, Apichart Intarapanich, Sissades Tongsima, Jittima Piriyapongsa
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0142002

dRNA-Seq Reveals Genomewide TSSs and Noncoding RNAs of Plant Beneficial Rhizobacterium Bacillus amyloliquefaciens FZB42
Cited by: 25
Author(s): Bin Fan, Lei Li, Yapeng Chao, Konrad U. Förstner, Jörg Vogel, Rainer Borriss, Xiao‐Qin Wu
Software Mentions: 2
Published: about 9 years ago

10.3390/biom10081161

The CARF Protein MM_0565 Affects Transcription of the Casposon-Encoded cas1-solo Gene in Methanosarcina mazei Gö1
Cited by: 4
Author(s): Andrea Ulbricht, Lisa Nickel, Katrin Weidenbach, Herman Vargas Gebauer, Claudia Kießling, Konrad U. Förstner, Ruth A. Schmitz
Software Mentions: 2
Published: over 4 years ago

10.1186/s12864-015-1993-3

Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315
Cited by: 31
Author(s): Andrea Saß, Heleen Van Acker, Konrad U. Förstner, Filip Van Nieuwerburgh, Dieter Deforce, Jörg Vogel, Tom Coenye
Software Mentions: 2
Published: about 9 years ago

10.1080/19490976.2021.1973836

SPI2 T3SS effectors facilitate enterocyte apical to basolateral transmigration of Salmonella-containing vacuoles in vivo
Cited by: 5
Author(s): Marcus Fulde, Kira van Vorst, Kaiyi Zhang, Alexander J. Westermann, Tobias Busche, Yong Chiun Huei, Katharina Welitschanski, Isabell Froh, Dennis Pägelow, Johanna Plendl, Christiane Pfarrer, Jörn Kalinowski, Jörg Vogel, Peter Valentin‐Weigand, Michael Hensel, Karsten Tedin, Urška Repnik, Mathias Hornef
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2015.00197

Future opportunities and trends for e-infrastructures and life sciences: going beyond the grid to enable life science data analysis
Cited by: 6
Author(s): Afonso M.S. Duarte, Fotis Psomopoulos, Christophe Blanchet, Alexandre M. J. J. Bonvin, Manuel Corpas, Alain Franc, Rafael C. Jiménez, Jesús Marco de Lucas, Tommi Nyrönen, Gergely Sipos, Stephanie Suhr
Software Mentions: 1
Published: over 9 years ago

10.1002/mbo3.1138

Tetrachloroethene respiration in Sulfurospirillum species is regulated by a two‐component system as unraveled by comparative genomics, transcriptomics, and regulator binding studies
Cited by: 5
Author(s): Jens Esken, Tobias Goris, Jennifer Gadkari, Thorsten Bischler, Konrad U. Förstner, Cynthia M Sharma, Gabriele Diekert, Torsten Schubert
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pone.0110427

Profound Impact of Hfq on Nutrient Acquisition, Metabolism and Motility in the Plant Pathogen Agrobacterium tumefaciens
Cited by: 26
Author(s): Philip Möller, Aaron Overlöper, Konrad U. Förstner, Wen Teng, Cynthia M. Sharma, Erh‐Min Lai, Franz Narberhaus
Software Mentions: 1
Published: about 10 years ago

10.3389/fmicb.2017.01941

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches
Cited by: 73
Author(s): Ines Krohn-Molt, Malik Alawi, Konrad U. Förstner, Alena Wiegandt, Lia Burkhardt, Daniela Indenbirken, Melanie Thieß, Adam Grundhoff, Julia Kehr, Andreas Tholey, Wolfgang R. Streit
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.ppat.1006327

Analysis of host microRNA function uncovers a role for miR-29b-2-5p in Shigella capture by filopodia
Cited by: 20
Author(s): Sunkavalli Ushasree, Carmen Aguilar, Ricardo J. Silva, Malvika Sharan, Ana Rita Cruz, Caroline Tawk, Claire Maudet, Miguel Mano, Ana Eulálio
Software Mentions: 1
Published: over 7 years ago

10.1111/mmi.13276

Characterisation of worldwideHelicobacter pyloristrains reveals genetic conservation and essentiality of serine protease HtrA
Cited by: 56
Author(s): Nicole Tegtmeyer, Yoshan Moodley, Yoshio Yamaoka, Sandy R. Pernitzsch, Vanessa Schmidt, Francisco Rivas Traverso, Thomas P. Schmidt, Roland Rad, Khay Guan Yeoh, Bow Ho, Javier Torres, Markus Gerhard, Gisbert Schneider, Silja Weßler, Steffen Backert
Software Mentions: 1
Published: almost 9 years ago

10.1038/srep35307

The primary transcriptome of the Escherichia coli O104:H4 pAA plasmid and novel insights into its virulence gene expression and regulation
Cited by: 16
Author(s): Petya Berger, Michael A. Knodler, Konrad U. Förstner, Michael Berger, Christian Bertling, Cynthia M. Sharma, Jörg Vogel, Helge Karch, Ulrich Dobrindt, Alexander Mellmann
Software Mentions: 1
Published: about 8 years ago

10.1186/s12864-016-2920-y

Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
Cited by: 104
Author(s): Julia Babski, Karina A. Haas, Daniela J. Näther-Schindler, Friedhelm Pfeiffer, Konrad U. Förstner, M Hammelmann, Rolf Hilker, Anke Becker, Cynthia M. Sharma, Anita Marchfelder, Jörg Soppa
Software Mentions: 1
Published: over 8 years ago

Ecosyste.ms: Papers

Projects: pypi: READemption

Papers Mentioning READemption 35