Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: p
https://packages.ecosyste.ms/registries/pypi.org/packages/p
Aliases any available project commands or scripts to `p <name>`.
4 versions
Latest release: about 2 years ago
2,182 downloads last month
Papers Mentioning p 37
10.3389/fpsyg.2018.02251
Disabled or Cyborg? How Bionics Affect Stereotypes Toward People With Physical DisabilitiesCited by: 28
Author(s): Bertolt Meyer, Frank Asbrock
Software Mentions: 11
Published: about 6 years ago
10.1002/advs.201901850
<i>Mesostigma viride</i> Genome and Transcriptome Provide Insights into the Origin and Evolution of StreptophytaCited by: 29
Author(s): Zhe Liang, Yuke Geng, Changmian Ji, Hongwu Du, Chui Eng Wong, Qian Zhang, Ye Zhang, Pingxian Zhang, Adeel Riaz, Sadaruddin Chachar, Yike Ding, Jing Wen, Yun-Wen Wu, Mingcheng Wang, Hongkun Zheng, Yanmin Wu, Viktor Demko, Lisha Shen, Han Xiao, Pengpeng Zhang, Xiaofeng Gu, Hao Yu
Software Mentions: 10
Published: about 5 years ago
10.15252/emmm.201708587
Reinstating plasticity and memory in a tauopathy mouse model with an acetyltransferase activatorCited by: 54
Author(s): Snehajyoti Chatterjee, Raphaelle Cassel, Anne Schneider‐Anthony, Karine Mérienne, Brigitte Cosquer, Laura Tzeplaeff, Sarmistha Sinha, Manoj Kumar, Piyush Chaturbedy, M. Eswaramoorthy, Stéphanie Le Gras, Céline Keime, Olivier Bousiges, P. Dutar, Petnoï Petsophonsakul, Claire Rampon, Jean‐Christophe Cassel, Luc Buée, David Blum, Tapas K. Kundu, Anne‐Laurence Boutillier
Software Mentions: 6
Published: about 6 years ago
10.3389/fmicb.2018.00897
Lactobacillus frumenti Facilitates Intestinal Epithelial Barrier Function Maintenance in Early-Weaned PigletsCited by: 54
Author(s): Jun Hu, Lingli Chen, Wenyong Zheng, Min Shi, Liu Liu, Chunlin Xie, Xinkai Wang, Youguo Niu, Qiliang Hou, Xichen Xu, Baoyang Xu, Yimei Tang, Shengqian Zhou, Yiqin Yan, Tao Yang, Libao Ma, Xianghua Yan
Software Mentions: 5
Published: over 6 years ago
10.3390/ijms22052352
Overexpression of A Biotic Stress-Inducible Pvgstu Gene Activates Early Protective Responses in Tobacco under Combined Heat and DroughtCited by: 8
Author(s): Evangelia Stavridou, Georgia Voulgari, Michail Michailidis, Stefanos Kostas, Evangelia Chronopoulou, Nikolaos E. Labrou, Panagiotis Madesis, Irini Nianiou-Obeidat
Software Mentions: 4
Published: over 3 years ago
10.1111/acel.13293
Novel DNA methylation marker discovery by assumption‐free genome‐wide association analysis of cognitive function in twinsCited by: 4
Author(s): Afsaneh Mohammadnejad, Mette Soerensen, Jan Baumbach, Jonas Mengel‐From, Weilong Li, Jesper Lund, Shuxia Li, Lene Christiansen, Kaare Christensen, Jacob Hjelmborg, Qihua Tan
Software Mentions: 4
Published: almost 4 years ago
10.1186/s40170-021-00257-6
High-resolution spatiotemporal pHe and pO2 imaging in head and neck and oesophageal carcinoma cellsCited by: 2
Author(s): Alexandra Blancke Soares, Robert J. Meier, Gregor Liebsch, Sabina Schwenk‐Zieger, Martin E. Kirmaier, Sebastian Theurich, Magdalena Widmann, Martin Canis, Olivier Gires, Frank Haubner
Software Mentions: 4
Published: over 3 years ago
10.1186/s40168-021-01103-z
The microbial metabolite p-Cresol induces autistic-like behaviors in mice by remodeling the gut microbiotaCited by: 66
Author(s): Patricia Bermudez-Martin, Jérôme A.J. Becker, Nicolas Caramello, Sebastian P. Fernandez, Renan Costa Campos, Juliette Canaguier, Susana Barbosa, Laura Martinez‐Gili, Antonis Myridakis, Marc Dumas, Aurélia Bruneau, Claire Cherbuy, Philippe Langella, Jacques Crinon, Jean Marie Launay, Joëlle Chabry, Jacques Barik, Julie Le Merrer, Nicolas Glaichenhaus, Laetitia Davidovic
Software Mentions: 4
Published: over 3 years ago
10.1111/tpj.14466
Multi‐targeting of viral RNAs with synthetic <i>trans</i>‐acting small interfering RNAs enhances plant antiviral resistanceCited by: 32
Author(s): Alberto Carbonell, Purificación Lisón, José‐Antonio Daròs
Software Mentions: 4
Published: about 5 years ago
10.1038/s41396-019-0508-7
Horizontal acquisition of a patchwork Calvin cycle by symbiotic and free-living Campylobacterota (formerly Epsilonproteobacteria)Cited by: 53
Author(s): Adrien Assié, Nikolaus Leisch, Dimitri V. Meier, Harald R. Gruber‐Vodicka, Halina E. Tegetmeyer, Anke Meyerdierks, Manuel Kleiner, Tjorven Hinzke, Samantha B. Joye, Matthew Saxton, Nicole Dubilier, Jillian M. Petersen
Software Mentions: 4
Published: about 5 years ago
10.1111/jcmm.14400
Circ_0136474 and MMP‐13 suppressed cell proliferation by competitive binding to miR‐127‐5p in osteoarthritisCited by: 58
Author(s): Zhao Li, Bo Yuan, Zhihua Pei, Keshi Zhang, Zhentao Ding, Si Zhu, Yichuan Wang, Zhi‐Zhong Guan, Yongping Cao
Software Mentions: 3
Published: over 5 years ago
10.1120/jacmp.v17i3.5885
Evaluation of the Eclipse eMC algorithm for bolus electron conformal therapy using a standard verification datasetCited by: 7
Author(s): Robert L. Carver, Conrad P. Sprunger, Kenneth R. Hogstrom, Richard A. Popple, John A. Antolak
Software Mentions: 3
Published: over 8 years ago
10.1371/journal.pone.0163688
Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American EpidemicCited by: 1
Author(s): Amirhossein Manzourolajdad, Mileidy Gonzalez, John L. Spouge
Software Mentions: 3
Published: about 8 years ago
10.3389/fninf.2014.00052
A simple tool for neuroimaging data sharingCited by: 7
Author(s): Christian Haselgrove, Jean‐Baptiste Poline, David N. Kennedy
Software Mentions: 3
Published: over 10 years ago
10.1371/journal.pone.0147097
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical StackingCited by: 9
Author(s): Lei Hua, Yang Song, Namhee Kim, Christian Laing, Jianli Wang, Tamar Schlick
Software Mentions: 3
Published: almost 9 years ago
10.1186/s13058-016-0685-5
An integrated genomics analysis of epigenetic subtypes in human breast tumors links DNA methylation patterns to chromatin states in normal mammary cellsCited by: 64
Author(s): Karolina Holm, Johan Staaf, Martin Lauss, Mattias Aine, David Lindgren, Pär‐Ola Bendahl, Johan Vallon‐Christersson, Rósa B. Barkardóttir, Mattias Höglund, Åke Borg, Göran Jönsson, Markus Ringnér
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0050961
Deep Sequencing of RNA from Ancient Maize KernelsCited by: 38
Author(s): Sarah L. Fordyce, María C. Ávila-Arcos, Morten Rasmussen, Enrico Cappellini, J. Alberto Romero-Navarro, Nathan Wales, David E. Alquezar‐Planas, Steven Penfield, Terence A. Brown, Jean‐Philippe Vielle‐Calzada, Rafaél Montiel, Tina Jørgensen, Nancy Odegaard, Michael A. Jacobs, Bernardo Arriaza, Thomas Higham, Christopher Bronk Ramsey, Eske Willerslev, M. Thomas P. Gilbert
Software Mentions: 2
Published: almost 12 years ago
10.1371/journal.pone.0041710
Predicting HLA Class I Non-Permissive Amino Acid Residues SubstitutionsCited by: 21
Author(s): T.A. Binkowski, Susana R. Marino, A. Joachimiak
Software Mentions: 2
Published: over 12 years ago
10.1093/cercor/bhw197
A Hedonism Hub in the Human BrainCited by: 17
Author(s): George Zacharopoulos, Thomas Lancaster, Tobias Bracht, Niklas Ihssen, Gregory R. Maio, David Edmund Johannes Linden
Software Mentions: 2
Published: over 8 years ago
10.3389/fnins.2021.680530
The Gene Expression Profile of the Song Control Nucleus HVC Shows Sex Specificity, Hormone Responsiveness, and Species Specificity Among SongbirdsCited by: 10
Author(s): Meng-Ching Ko, Carolina Frankl-Vilches, Antje Bakker, Manfred Gahr
Software Mentions: 2
Published: over 3 years ago
10.3389/fpls.2014.00356
Unravelling the proteomic profile of rice meiocytes during early meiosisCited by: 22
Author(s): Melania Collado-Romero, Enriqueta Alós, Pilar Prieto
Software Mentions: 2
Published: over 10 years ago
10.1007/s10815-019-01451-8
Bayesian model for accurate MARSALA (mutated allele revealed by sequencing with aneuploidy and linkage analyses)Cited by: 4
Author(s): Luoxing Xiong, Lei Huang, Feng Tian, Sijia Lü, X. Sunney Xie
Software Mentions: 2
Published: over 5 years ago
10.1038/s41598-020-59110-3
The draft genome of mandrill (Mandrillus sphinx): An Old World monkeyCited by: 3
Author(s): Ye Yin, Ting Yang, Sunil Kumar Sahu, Ziheng Huang, Yaolei Zhang, Yue Song, Wenliang Wang, Xuanmin Guang, Sunil Kumar Sahu, Karsten Kristiansen
Software Mentions: 2
Published: almost 5 years ago
10.3389/fgene.2015.00276
An introductory review of parallel independent component analysis (p-ICA) and a guide to applying p-ICA to genetic data and imaging phenotypes to identify disease-associated biological pathways and systems in common complex disordersCited by: 73
Author(s): Godfrey D. Pearlson, Jingyu Liu, Vince D. Calhoun
Software Mentions: 1
Published: about 9 years ago
10.3390/genes5020385
The Little Fly that Could: Wizardry and Artistry of Drosophila GenomicsCited by: 10
Author(s): Radoslaw K. Ejsmont, Bassem A. Hassan
Software Mentions: 1
Published: over 10 years ago
10.1186/s13073-021-00891-1
Rare variant analysis of 4241 pulmonary arterial hypertension cases from an international consortium implicates FBLN2, PDGFD, and rare de novo variants in PAHCited by: 36
Author(s): Na Zhu, Emilia M. Swietlik, Carrie L. Welch, Michael W. Pauciulo, Jacob Hagen, Xueya Zhou, Yicheng Guo, Johannes Karten, Divya Pandya, Tobias Tilly, Katie A. Lutz, Jennifer Martin, Carmen Treacy, Erika B. Rosenzweig, Usha Krishnan, Alan Coleman, Claudia Gonzaga‐Jauregui, Allan Lawrie, Richard Trembath, Martin R. Wilkins, Pah Biobank Enrolling Centers’ Investigators, Heritable Pah, Nicholas W. Morrell, Yufeng Shen, Stefan Gräf, William C. Nichols, Wendy K. Chung
Software Mentions: 1
Published: over 3 years ago
10.1186/s13071-014-0573-8
Leishmania braziliensis replication protein A subunit 1: molecular modelling, protein expression and analysis of its affinity for both DNA and RNACited by: 7
Author(s): Paola Nocua, César Augusto Ramírez Segura, George E. Barreto, Janneth González, José Marı́a Requena, Concepción J. Puerta
Software Mentions: 1
Published: almost 10 years ago
10.1120/jacmp.v4i2.2528
Characterization of an<i>in vivo</i>diode dosimetry system for clinical useCited by: 17
Author(s): Kai Huang, William S. Bice, Oscar Hidalgo‐Salvatierra
Software Mentions: 1
Published: over 21 years ago
10.1111/pce.12630
Phenylphenalenones protect banana plants from infection by<i>Mycosphaerella fijiensis</i>and are deactivated by metabolic conversionCited by: 28
Author(s): William Hidalgo, Jima N. Chandran, Riya Christina Menezes, Felipe Otálvaro, Bernd Schneider
Software Mentions: 1
Published: almost 9 years ago
10.1111/jcmm.13463
The impact on high-grade serous ovarian cancer of obesity and lipid metabolism-related gene expression patterns: the underestimated driving force affecting prognosisCited by: 10
Author(s): Mauricio Cuello, Sumie Kato, Francisca Liberona
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0012405
Distinct Patterns of DNA Damage Response and Apoptosis Correlate with Jak/Stat and PI3Kinase Response Profiles in Human Acute Myelogenous LeukemiaCited by: 26
Author(s): David B. Rosen, Santosh Putta, Todd Covey, Ying Huang, Garry P. Nolan, Alessandra Cesano, Mark D. Minden, Wendy J. Fantl
Software Mentions: 1
Published: about 14 years ago
10.1037/xge0000157
Selection bias, vote counting, and money-priming effects: A comment on Rohrer, Pashler, and Harris (2015) and Vohs (2015).Cited by: 24
Author(s): Miguel A. Vadillo, Tom E Hardwicke, David R. Shanks
Software Mentions: 1
Published: over 8 years ago
10.15252/msb.20156269
Systematic discovery of linear binding motifs targeting an ancient protein interaction surface on <scp>MAP</scp> kinasesCited by: 56
Author(s): András Zeke, Tomas Bastys, Anita Alexa, Ágnes Garai, Bálint Mészáros, Klára Kirsch, Zsuzsanna Dosztányi, Olga Kalinina, Attila Reményi
Software Mentions: 1
Published: about 9 years ago
10.3389/fmicb.2015.00319
Gene expression in the mixotrophic prymnesiophyte, Prymnesium parvum, responds to prey availabilityCited by: 26
Author(s): Zhenfeng Liu, Adriane C. Jones, Victoria Campbell, K. David Hambright, Karla B. Heidelberg, David A. Caron
Software Mentions: 1
Published: over 9 years ago
10.1038/s41398-021-01495-4
Cerebral small vessel disease burden and longitudinal cognitive decline from age 73 to 82: the Lothian Birth Cohort 1936Cited by: 14
Author(s): Olivia Hamilton, Simon R. Cox, Judith A. Okely, Federica Conte, Lucia Ballerini, Mark E. Bastin, Janie Corley, Adele M. Taylor, Danielle Page, Alan J. Gow, Susana Muñoz Maniega, Paul Redmond, Maria del C. Valdés-Hernández, Joanna M. Wardlaw, Ian J. Deary
Software Mentions: 1
Published: over 3 years ago
10.3390/ani10030423
Developing Single Nucleotide Polymorphisms for Identification of Cod Products by RAD-SeqCited by: 4
Author(s): Shoujia Jiang, Xingyu Ma, Tao Li, Changqing Zhu, Xinxin You
Software Mentions: 1
Published: over 4 years ago