pypi: autobuild | Projects | Ecosyste.ms: Papers

10.7554/eLife.10150

ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation
Cited by: 50
Author(s): Nataliya Nady, Ankit Gupta, Ziyang Ma, Tomek Swigut, Akiko Koide, Shohei Koide, Joanna Wysocka
Software Mentions: 6
Published: about 9 years ago

10.1107/S0907444909052925

PHENIX: a comprehensive Python-based system for macromolecular structure solution
Cited by: 19,578
Author(s): Paul D. Adams, Pavel V. Afonine, G. Bunkóczi, Vincent B. Chen, Ian Davis, Nathaniel Echols, Jeffrey J. Headd, Li Wei Hung, Gary J. Kapral, Ralf W. Grosse‐Kunstleve, Airlie J. McCoy, Nigel W. Moriarty, Robert D. Oeffner, Randy J. Read, David C. Richardson, Jane S. Richardson, Thomas C. Terwilliger, Peter H. Zwart
Software Mentions: 6
Published: almost 15 years ago

10.1107/S0907444913022750

Phaser.MRage: automated molecular replacement
Cited by: 204
Author(s): G. Bunkóczi, Nathaniel Echols, Airlie J. McCoy, Robert D. Oeffner, Paul D. Adams, Randy J. Read
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-017-14959-9

Crystal Structure of Borrelia turicatae protein, BTA121, a differentially regulated gene in the tick-mammalian transmission cycle of relapsing fever spirochetes
Cited by: 2
Author(s): Zhipu Luo, Alan Kelleher, Rabih Darwiche, Elissa M. Hudspeth, Oluwatosin Kudirat Shittu, Aparna Krishnavajhala, Roger Schneiter, Job E. López, Oluwatoyin A. Asojo
Software Mentions: 4
Published: about 7 years ago

10.1107/S0907444910000272

Rapid chain tracing of polypeptide backbones in electron-density maps
Cited by: 5
Author(s): Thomas C. Terwilliger
Software Mentions: 3
Published: almost 15 years ago

10.1107/S0907444912015636

Improved crystallographic models through iterated local density-guided model deformation and reciprocal-space refinement
Cited by: 35
Author(s): Thomas C. Terwilliger, Randy J. Read, Paul D. Adams, Axel T. Brunger, Pavel V. Afonine, Ralf W. Grosse‐Kunstleve, Li Wei Hung
Software Mentions: 3
Published: over 12 years ago

10.1107/S1399004715004514

Raster-scanning serial protein crystallography using micro- and nano-focused synchrotron beams
Cited by: 112
Author(s): Nicolas Coquelle, Aaron S. Brewster, U. Kapp, Anastasya Shilova, Britta Weinhausen, Manfred Burghammer, J.P. Colletier
Software Mentions: 3
Published: over 9 years ago

10.1126/sciadv.aaq0762

Structures of monomeric and oligomeric forms of the Toxoplasma gondii perforin-like protein 1
Cited by: 28
Author(s): Ni Tien, Sophie I. Williams, Saša Rezelj, Gregor Anderluh, K. Harlos, Phillip J. Stansfeld, Robert J.C. Gilbert
Software Mentions: 3
Published: over 6 years ago

10.1007/s10969-012-9129-3

phenix.mr_rosetta: molecular replacement and model rebuilding with Phenix and Rosetta
Cited by: 132
Author(s): Thomas C. Terwilliger, Frank DiMaio, R.J. Read, David Baker, G. Bunkóczi, Paul D. Adams, Ralf W. Grosse‐Kunstleve, Pavel V. Afonine, Nathaniel Echols
Software Mentions: 3
Published: over 12 years ago

10.1107/S2053230X18005915

Structure of the tandem PX-PH domains of Bem3 fromSaccharomyces cerevisiae
Cited by: 4
Author(s): Imtiaz S. Ali, Sungmin Eu, Daniel Koch, Nathalie Bleimling, Roger S. Goody, Matthias Müller
Software Mentions: 2
Published: over 6 years ago

10.1038/s41598-019-48612-4

Non-Contact Universal Sample Presentation for Room Temperature Macromolecular Crystallography Using Acoustic Levitation
Cited by: 16
Author(s): Robert H. Morris, E. Dye, Danny Axford, Michael I. Newton, John Beale, Peter Docker
Software Mentions: 2
Published: about 5 years ago

10.1107/S2052252520013494

Molecular-replacement phasing using predicted protein structures from AWSEM-Suite
Cited by: 9
Author(s): Shuang Jin, Mitchell D. Miller, M. Chen, Nicholas P. Schafer, Xin Lin, X. Chen, George N. Phillips, Peter G. Wolynes
Software Mentions: 2
Published: about 4 years ago

10.1016/j.jmb.2011.10.024

Crystal Structure of the VapBC Toxin–Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly
Cited by: 70
Author(s): Christian Dienemann, Andreas Bøggild, Kristoffer Skovbo Winther, Kenn Gerdes, D.E. Brodersen
Software Mentions: 2
Published: almost 13 years ago

10.1107/S2059798315010268

Data collection with a tailored X-ray beam size at 2.69 Å wavelength (4.6 keV): sulfur SAD phasing of Cdc23Nterm
Cited by: 9
Author(s): Michele Cianci, Matthew R. Groves, David Barford, Thomas R. Schneider
Software Mentions: 2
Published: over 8 years ago

10.7554/eLife.26691

9Å structure of the COPI coat reveals that the Arf1 GTPase occupies two contrasting molecular environments
Cited by: 92
Author(s): S.O. Dodonova, Patrick Aderhold, Jürgen Kopp, Iva Ganeva, Simone Röhling, Wim J. H. Hagen, Irmgard Sinning, Felix Wieland, John Briggs
Software Mentions: 2
Published: over 7 years ago

10.1186/s12862-019-1541-x

PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees
Cited by: 3
Author(s): Yang Fang, Chengcheng Liu, Jianlong Lin, Xufeng Li, Kambiz N. Alavian, Yi Yang, Yulong Niu
Software Mentions: 2
Published: almost 5 years ago

10.3389/fpls.2016.01850

Structure and Function of the TIR Domain from the Grape NLR Protein RPV1
Cited by: 34
Author(s): Simon J. Williams, Ling Yin, Gabriel Foley, Lachlan W. Casey, Megan A. Outram, Daniel Ericsson, Jiang Lu, Mikael Bodén, Ian B. Dry, Boštjan Kobe
Software Mentions: 2
Published: almost 8 years ago

10.1038/s42003-018-0262-9

Crystal structures of human lysosomal EPDR1 reveal homology with the superfamily of bacterial lipoprotein transporters
Cited by: 19
Author(s): Yong Wei, Zi Jian Xiong, Jun Li, Chunxia Zou, Christopher W. Cairo, John S. Klassen, Gilbert G. Privé
Software Mentions: 2
Published: almost 6 years ago

10.1074/jbc.RA118.002291

A low-complexity region in the YTH domain protein Mmi1 enhances RNA binding
Cited by: 11
Author(s): James A.W. Stowell, Jane L. Wagstaff, C.P. Hill, Myeong-Hee Yu, Stephen H. McLaughlin, Stefan Freund, Lori A. Passmore
Software Mentions: 2
Published: over 6 years ago

10.12688/f1000research.17694.1

Cadmium SAD phasing at CuKα wavelength
Cited by: 1
Author(s): Igor E. Eliseev, Anna Yudenko, V. M. Ukrainskaya, Oleg B. Chakchir
Software Mentions: 2
Published: almost 6 years ago

10.1002/2211-5463.12720

Characterization of an intertidal zone metagenome oligoribonuclease and the role of the intermolecular disulfide bond for homodimer formation and nuclease activity
Cited by: 1
Author(s): Yvonne Piotrowski, Kristel Berg, David P. Klebl, Ingar Leiros, Atle Noralf Larsen
Software Mentions: 2
Published: about 5 years ago

10.7554/eLife.07410

The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation
Cited by: 35
Author(s): Kacper B. Rogala, Nicola J. Dynes, Georgios N. Hatzopoulos, Jun Yan, Sheng Kai Pong, Carol V. Robinson, Charlotte M. Deane, Pierre Gönczy, Ioannis Vakonakis
Software Mentions: 2
Published: over 9 years ago

10.1038/srep11677

Redox Linked Flavin Sites in Extracellular Decaheme Proteins Involved in Microbe-Mineral Electron Transfer.
Cited by: 135
Author(s): Marcus J. Edwards, Gaye F. White, Michael Norman, Alice Tome-Fernandez, Emma V. Ainsworth, Liang Shi, Jim K. Fredrickson, John M. Zachara, Julea N. Butt, David J. Richardson, Thomas A. Clarke
Software Mentions: 2
Published: over 9 years ago

10.15252/embj.2019101603

Structures of neurexophilin–neurexin complexes reveal a regulatory mechanism of alternative splicing
Cited by: 15
Author(s): Steven C Wilson, K. Ian White, Qiuhong Zhou, Richard A. Pfuetzner, Ucheor B. Choi, Thomas C. Südhof, Axel T. Brunger
Software Mentions: 2
Published: about 5 years ago

10.1371/journal.pbio.3000755

Structural basis of human full-length kindlin-3 homotrimer in an auto-inhibited state
Cited by: 22
Author(s): Wenting Bu, Zarina Levitskaya, Zhi Yang Loh, Shengyang Jin, Shibom Basu, Rya Ero, Xin-Fu Yan, Meitian Wang, So Fong Cam Ngan, Siu Kwan Sze, Suet-Mien Tan, Yong‐Gui Gao
Software Mentions: 1
Published: over 4 years ago

10.15252/embr.201642825

Structural studies of <scp>RFCC</scp>tf18 reveal a novel chromatin recruitment role for Dcc1
Cited by: 17
Author(s): B.O. Wade, Hon Wing Liu, Catarina P. Samora, Frank Uhlmann, Martin R. Singleton
Software Mentions: 1
Published: almost 8 years ago

10.3389/fmicb.2019.02922

Structural and Functional Insights Into CmGH1, a Novel GH39 Family β-Glucosidase From Deep-Sea Bacterium
Cited by: 8
Author(s): Yunli Shen, Zhengyang Li, Ying‐Yi Huo, Luyao Bao, Baocai Gao, Xiao Peng, Xiaojian Hu, Xue-Wei Xu, Jixi Li
Software Mentions: 1
Published: almost 5 years ago

10.1074/jbc.M115.700427

Structural and Biochemical Characterization of the Early and Late Enzymes in the Lignin β-Aryl Ether Cleavage Pathway from Sphingobium sp. SYK-6
Cited by: 42
Author(s): J.H. Pereira, Richard A. Heins, Daniel L. Gall, R.P. McAndrew, Kai Deng, Keefe C. Holland, Timothy J. Donohue, Daniel R. Noguera, Blake A. Simmons, Kenneth L. Sale, John Ralph, Paul D. Adams
Software Mentions: 1
Published: over 8 years ago

10.1074/jbc.RA120.014936

Structure and kinetics of indole-3-glycerol phosphate synthase from Pseudomonas aeruginosa: Decarboxylation is not essential for indole formation
Cited by: 1
Author(s): Annika Söderholm, Matilda Newton, Wayne M. Patrick, M. Selmer
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.ppat.1003560

A Compact Viral Processing Proteinase/Ubiquitin Hydrolase from the OTU Family
Cited by: 26
Author(s): Charlotte Lombardi, Maya Ayach, Lionel Beaurepaire, Mélanie Chenon, Jessica Andréani, Raphaël Guérois, Isabelle Jupin, Stéphane Bressanelli
Software Mentions: 1
Published: over 11 years ago

10.1038/srep37123

Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures
Cited by: 20
Author(s): Zhipu Luo
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0166274

The Structure of Treponema pallidum Tp0624 Reveals a Modular Assembly of Divergently Functionalized and Previously Uncharacterized Domains
Cited by: 9
Author(s): Michelle Parker, Stanley Houston, Wetherell Charmaine, Caroline E. Cameron, Martin J. Boulanger
Software Mentions: 1
Published: about 8 years ago

Ecosyste.ms: Papers

Projects: pypi: autobuild

Papers Mentioning autobuild 32