pypi: Tachyon | Projects | Ecosyste.ms: Papers

10.1107/S2059798317000031

Crystal structure and RNA-binding properties of an Hfq homolog from the deep-branching Aquificae: conservation of the lateral RNA-binding mode
Cited by: 18
Author(s): Kimberly A. Stanek, Jennifer Patterson-West, Peter S. Randolph, Cameron Mura
Software Mentions: 5
Published: over 7 years ago

10.1107/S0907444911049791

Conventions and workflows for using <i>Situs</i>
Cited by: 157
Author(s): Willy Wriggers
Software Mentions: 5
Published: over 12 years ago

10.1186/s40537-014-0008-6

A survey on platforms for big data analytics
Cited by: 280
Author(s): Deepesh Singh, Chandan K. Reddy
Software Mentions: 3
Published: about 10 years ago

10.3390/s21072321

CCA: Cost-Capacity-Aware Caching for In-Memory Data Analytics Frameworks
Cited by: 1
Author(s): Seongsoo Park, Minseop Jeong, Hwansoo Han
Software Mentions: 3
Published: over 3 years ago

10.1083/jcb.202011078

Cysteine cross-linking in native membranes establishes the transmembrane architecture of Ire1
Cited by: 6
Author(s): Kristina Väth, Carsten Mattes, John F. Reinhard, Roberto Covino, Heike Stumpf, Gerhard Hummer, Robert Ernst
Software Mentions: 3
Published: over 3 years ago

10.3390/biom11060848

Micro-Aqueous Organic System: A Neglected Model in Computational Lipase Design?
Cited by: 1
Author(s): Shang Wang, Yan Xu, Yu Xiang
Software Mentions: 3
Published: over 3 years ago

10.3389/fphy.2017.00010

MutSα's Multi-Domain Allosteric Response to Three DNA Damage Types Revealed by Machine Learning
Cited by: 8
Author(s): Ryan L. Melvin, W. G. Thompson, Ryan Godwin, William H. Gmeiner, Freddie R. Salsbury
Software Mentions: 3
Published: over 7 years ago

10.3390/ijms22020718

Rounding Out the Understanding of ACD Toxicity with the Discovery of Cyclic Forms of Actin Oligomers
Cited by: 6
Author(s): Harper Smith, Nick Pinkerton, David B. Heisler, Elena Kudryashova, Aaron R Hall, Kelly R. Karch, Andrew Norris, Vicki H. Wysocki, Marcos Sotomayor, Emil Reisler, Dimitrios Vavylonis, Dmitri S. Kudryashov
Software Mentions: 2
Published: almost 4 years ago

10.3390/biom10091289

Nucleotide Loading Modes of Human RNA Polymerase II as Deciphered by Molecular Simulations
Cited by: 2
Author(s): Nicolas Edmond Genin, Robert O. J. Weinzierl
Software Mentions: 2
Published: about 4 years ago

10.1371/journal.pcbi.1007877

Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC
Cited by: 3
Author(s): Eric Wright, Mauricio Ferrato, Alexander J. Bryer, Robert Schleicher, Juan R. Perilla, Sunita Chandrasekaran
Software Mentions: 2
Published: over 4 years ago

10.3797/scipharm.1106-24

Prediction of the Human EP1 Receptor Binding Site by Homology Modeling and Molecular Dynamics Simulation
Cited by: 6
Author(s): Bijan Zare, Armin Madadkar-Sobhani, Siavoush Dastmalchi, M Mahmoudian
Software Mentions: 2
Published: almost 14 years ago

10.1038/s41598-020-61399-z

Delineating elastic properties of kinesin linker and their sensitivity to point mutations
Cited by: 0
Author(s): Michał Świątek, Ewa Gudowska–Nowak
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0039492

Simulation vs. Reality: A Comparison of In Silico Distance Predictions with DEER and FRET Measurements
Cited by: 61
Author(s): Daniel Klose, Johann P. Klare, Dina Grohmann, Christopher W. M. Kay, Finn Werner, Heinz‐Jürgen Steinhoff
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0114366

Novel Anti-Nicotine Vaccine Using a Trimeric Coiled-Coil Hapten Carrier
Cited by: 32
Author(s): Keith Miller, Richard Roque, Christopher H. Clegg
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0019129

Mapping the Conformational Dynamics and Pathways of Spontaneous Steric Zipper Peptide Oligomerization
Cited by: 44
Author(s): Dirk Matthes, Vytautas Gapsys, Venita Daebel, Bert L. de Groot
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0064883

Enhancing Protein Adsorption Simulations by Using Accelerated Molecular Dynamics
Cited by: 32
Author(s): Christian Mücksch, Herbert M. Urbassek
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0121092

A Wrench in the Works of Human Acetylcholinesterase: Soman Induced Conformational Changes Revealed by Molecular Dynamics Simulations
Cited by: 28
Author(s): Brian J. Bennion, Şebnem Eşsiz, Edmond Y. Lau, Jean‐Luc Fattebert, Aiyana M. Emigh, Felice C. Lightstone
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0004769

SpeB of Streptococcus pyogenes Differentially Modulates Antibacterial and Receptor Activating Properties of Human Chemokines
Cited by: 49
Author(s): Arne Egesten, Anders I. Olin, Helena M. Linge, Manisha Yadav, Matthias Mörgelin, Anna Karlsson, Mattias Collin
Software Mentions: 1
Published: over 15 years ago

10.1371/journal.pone.0057795

In Silico Structural and Functional Characterization of the RSUME Splice Variants
Cited by: 10
Author(s): Juan Gerez, Mariana Fuertes, Lucas Tedesco, Susana Silberstein, Gustavo Sevlever, Marcelo Paez-Pereda, Florian Holsboer, Adrián Turjanski, Eduardo Arzt
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pone.0227668

Disease-relevant mutations alter amino acid co-evolution networks in the second nucleotide binding domain of CFTR
Cited by: 2
Author(s): Gabrianne Ivey, Robert T. Youker
Software Mentions: 1
Published: almost 5 years ago

10.1371/journal.pbio.1000017

Role of a Novel PH-Kinase Domain Interface in PKB/Akt Regulation: Structural Mechanism for Allosteric Inhibition
Cited by: 214
Author(s): Véronique Calleja, Michel S. Laguerre, Peter J. Parker, Banafshé Larijani
Software Mentions: 1
Published: almost 16 years ago

10.3390/molecules25153539

Dissolving Cellulose in 1,2,3-Triazolium- and Imidazolium-Based Ionic Liquids with Aromatic Anions
Cited by: 20
Author(s): Martin Brehm, Julian Radicke, Martin Pulst, Farzaneh Shaabani, Daniel Sebastiani, Jörg Kreßler
Software Mentions: 1
Published: over 4 years ago

10.3390/molecules26071875

Optimized Atomic Partial Charges and Radii Defined by Radical Voronoi Tessellation of Bulk Phase Simulations
Cited by: 4
Author(s): Martin Brehm, Martin A. Thomas
Software Mentions: 1
Published: over 3 years ago

10.1002/jcc.25054

Rhorix: An interface between quantum chemical topology and the 3D graphics program blender
Cited by: 7
Author(s): Matthew J. L. Mills, Kenneth L. Sale, Blake A. Simmons, Paul L. A. Popelier
Software Mentions: 1
Published: about 7 years ago

10.3390/ijms160920748

Common Amino Acid Subsequences in a Universal Proteome—Relevance for Food Science
Cited by: 22
Author(s): Piotr Minkiewicz, Małgorzata Darewicz, Anna Iwaniak, Jolanta Sokołowska, Piotr Starowicz, Justyna Bucholska, Monika Hrynkiewicz
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-24478-w

Lignin peroxidase ligand access channel dysfunction in the presence of atrazine
Cited by: 8
Author(s): János Ecker, László Fülöp
Software Mentions: 1
Published: over 6 years ago

10.1186/s12934-018-1010-z

Identification of sesquiterpene synthases from the Basidiomycota Coniophora puteana for the efficient and highly selective β-copaene and cubebol production in E. coli
Cited by: 34
Author(s): Wolfgang Mischko, Max Hirte, Monika Fuchs, Norbert Mehlmer, Thomas Brück
Software Mentions: 1
Published: about 6 years ago

10.3390/s150203932

Fluorescence Spectroscopy Approaches for the Development of a Real-Time Organophosphate Detection System Using an Enzymatic Sensor
Cited by: 43
Author(s): Paola Carullo, Giovanni Paolo Cetrangolo, Luigi Mandrich, Giuseppe Manco, Ferdinando Febbraio
Software Mentions: 1
Published: over 9 years ago

10.3390/molecules25245861

Exploring Free Energy Profiles of Enantioselective Organocatalytic Aldol Reactions under Full Solvent Influence
Cited by: 7
Author(s): Moritz Weiß, Martin Brehm
Software Mentions: 1
Published: almost 4 years ago

10.1371/journal.pcbi.0040024

How Force Might Activate Talin's Vinculin Binding Sites: SMD Reveals a Structural Mechanism
Cited by: 148
Author(s): Vesa P. Hytönen, Viola Vogel
Software Mentions: 1
Published: over 16 years ago

10.3390/toxins4020110

Developing a Comparative Docking Protocol for the Prediction of Peptide Selectivity Profiles: Investigation of Potassium Channel Toxins
Cited by: 26
Author(s): Po-Chia Chen, Serdar Kuyucak
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0020345

The Membrane Bound LRR Lipoprotein Slr, and the Cell Wall-Anchored M1 Protein from Streptococcus pyogenes Both Interact with Type I Collagen
Cited by: 27
Author(s): Marta Bober, Matthias Mörgelin, Anders I. Olin, Ulrich von Pawel‐Rammingen, Mattias Collin
Software Mentions: 1
Published: over 13 years ago

Ecosyste.ms: Papers

Projects: pypi: Tachyon

Papers Mentioning Tachyon 32