Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: diff
https://packages.ecosyste.ms/registries/pypi.org/packages/diff
"You diff objects, you find out why they ain't the same."
6 versions
Latest release: over 4 years ago
2,934 downloads last month
Papers Mentioning diff 33
10.1186/s12859-021-04054-2
CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry dataCited by: 13
Author(s): Yuting Dai, Aining Xu, Jianfeng Li, Liang Wu, Shanhe Yu, Jun Chen, Wei‐Li Zhao, Xiao Jian Sun, Jinyan Huang
Software Mentions: 17
Published: over 3 years ago
10.1155/2014/910390
<i>biomvRhsmm:</i>Genomic Segmentation with Hidden Semi-Markov ModelCited by: 4
Author(s): Yang Du, Eduard Muráni, Siriluck Ponsuksili, Klaus Wimmers
Software Mentions: 10
Published: almost 11 years ago
10.1111/mec.15648
Genomic signatures of convergent adaptation to Alpine environments in three Brassicaceae speciesCited by: 11
Author(s): Christian Rellstab, Stefan Zoller, Christian Sailer, Andrew Tedder, Félix Gugerli, Kentaro Shimizu, Rolf Holderegger, Alex Widmer, Martin C. Fischer
Software Mentions: 9
Published: about 4 years ago
10.3389/fninf.2018.00016
Experimental Directory Structure (Exdir): An Alternative to HDF5 Without Introducing a New File FormatCited by: 14
Author(s): Svenn-Arne Dragly, Milad Hobbi Mobarhan, Mikkel Elle Lepperød, Simen Tennøe, Marianne Fyhn, Torkel Hafting, Anders Malthe‐Sørenssen
Software Mentions: 7
Published: over 6 years ago
10.1093/gigascience/giy125
A benchmark study of k-mer counting methods for high-throughput sequencingCited by: 43
Author(s): Swati Manekar, S. R. Sathe
Software Mentions: 4
Published: about 6 years ago
10.7717/peerj.2681
RGFA: powerful and convenient handling of assembly graphsCited by: 5
Author(s): Giorgio Gonnella, Stefan Kurtz
Software Mentions: 4
Published: about 8 years ago
10.1002/ece3.6001
RAPTURE (RAD capture) panel facilitates analyses characterizing sea lamprey reproductive ecology and movement dynamicsCited by: 27
Author(s): Nicholas M. Sard, Seth Smith, Jared J. Homola, Jeannette Kanefsky, Gale A. Bravener, Jean V. Adams, Christopher M. Holbrook, Peter J. Hrodey, Kevin Tallon, Kim T. Scribner
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.ppat.1009272
Nucleosome landscape reflects phenotypic differences in Trypanosoma cruzi life formsCited by: 10
Author(s): Alex Ranieri Jerônimo Lima, Christiane B. de Araujo, Saloê Bispo, José Salvatore Leister Patané, Ariel Mariano Silber, Maria Carolina Elias, Júlia Pinheiro Chagas da Cunha
Software Mentions: 4
Published: almost 4 years ago
10.1002/path.4886
Molecular classification of urothelial carcinoma: global mRNA classification versus tumour-cell phenotype classificationCited by: 245
Author(s): Gottfrid Sjödahl, Pontus Eriksson, Fredrik Liedberg, Mattias Höglund
Software Mentions: 4
Published: over 7 years ago
10.1093/database/bav094
Sample data processing in an additive and reproducible taxonomic workflow by using character data persistently linked to preserved individual specimensCited by: 20
Author(s): Norbert Kilian, Tilo Henning, Patrick Plitzner, Andreas Müller, Anton Güntsch, Ben C Stöver, Kai Müller, Walter G. Berendsohn, Thomas Borsch
Software Mentions: 3
Published: almost 10 years ago
10.1186/s12859-018-2014-8
Introducing difference recurrence relations for faster semi-global alignment of long sequencesCited by: 69
Author(s): Hajime Suzuki, Masahiro Kasahara
Software Mentions: 3
Published: almost 7 years ago
10.1186/s12918-014-0115-1
A computational platform to maintain and migrate manual functional annotations for BioCyc databasesCited by: 4
Author(s): Jesse R. Walsh, Taner Z. Sen, Julie A. Dickerson
Software Mentions: 3
Published: about 10 years ago
10.3390/s21124054
HyAdamC: A New Adam-Based Hybrid Optimization Algorithm for Convolution Neural NetworksCited by: 17
Author(s): Kyung Soo Kim, Yong-Suk Choi
Software Mentions: 3
Published: over 3 years ago
10.1186/s40163-021-00156-7
The impact of strict measures as a result of the COVID-19 pandemic on the spatial pattern of the demand for police: case study Antwerp (Belgium)Cited by: 4
Author(s): Maite Dewinter, Christophe Vandeviver, Philipp M. Dau, Tom Vander Beken, Frank Witlox
Software Mentions: 2
Published: about 3 years ago
10.3390/e22060600
Distributed Steganography in PDF Files—Secrets Hidden in Modified PagesCited by: 7
Author(s): Katarzyna Koptyra, Marek R. Ogiela
Software Mentions: 2
Published: over 4 years ago
10.7717/peerj-cs.372
Software evolution: the lifetime of fine-grained elementsCited by: 1
Author(s): Diomidis Spinellis, Πάνος Λουρίδας, Maria Kechagia
Software Mentions: 2
Published: almost 4 years ago
10.1186/s12859-021-04263-9
Computational comparison of common event-based differential splicing tools: practical considerations for laboratory researchersCited by: 10
Author(s): Ittai B. Muller, Stijn Meijers, Peter Kampstra, Steven van Dijk, Michel van Elswijk, Marry Lin, Anna Wojtuszkiewicz, Gerrit Jansen, Robert de Jonge, Jacqueline Cloos
Software Mentions: 2
Published: over 3 years ago
10.1002/advs.202004635
The Dual Function of KDM5C in Both Gene Transcriptional Activation and Repression Promotes Breast Cancer Cell Growth and TumorigenesisCited by: 23
Author(s): Hai‐feng Shen, Wen‐juan Zhang, Ying Huang, Yaohui He, Guo-Sheng Hu, Lei Wang, Bing‐ling Peng, Yi Jia, Ting‐ting Li, Rui Rong, Xiao‐yan Chen, Jun‐yi Liu, Wenjuan Li, Kenny Ohgi, Shaowei Li, Michael G. Rosenfeld, Wen Li
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0050769
Using RosettaLigand for Small Molecule Docking into Comparative ModelsCited by: 38
Author(s): Kristian Kaufmann, Jens Meiler
Software Mentions: 2
Published: almost 12 years ago
10.5808/GI.2020.18.2.e24
An empirical evaluation of electronic annotation tools for Twitter dataCited by: 0
Author(s): Davy Weissenbacher, Karen OʼConnor, Aiko T. Hiraki, Jin-Dong Kim, Graciela Gonzalez-Hernandez
Software Mentions: 1
Published: over 4 years ago
10.3390/jcm10173990
Does Health Literacy Reinforce Disease Knowledge Gain? A Prospective Observational Study of Hungarian COPD PatientsCited by: 3
Author(s): Orsolya Papp-Zipernovszky, Márta Csabai, Peter Schulz, János Varga
Software Mentions: 1
Published: about 3 years ago
10.1186/s12919-016-0058-1
Comparison of 2 models for gene–environment interactions: an example of simulated gene–medication interactions on systolic blood pressure in family-based dataCited by: 3
Author(s): Lindsay Fernández-Rhodes, Chani J. Hodonsky, Mariaelisa Graff, Shelly Ann Love, Annie Green Howard, Amanda A. Seyerle, Christy L. Avery, Geetha Chittoor, Nora Franceschini, V. Saroja Voruganti, Kristin L. Young, Jeffrey R. O’Connell, Kari E. North, Anne E. Justice
Software Mentions: 1
Published: about 8 years ago
10.3390/s19183890
Monitoring the Snowpack Volume in a Sinkhole on Mount Lebanon using Time Lapse PhotogrammetryCited by: 9
Author(s): Charbel Abou Chakra, Simon Gascoin, Janine Somma, Pascal Fanise, Laurent Drapeau
Software Mentions: 1
Published: about 5 years ago
10.3390/s20236735
Coarse-to-Fine Satellite Images Change Detection Framework via Boundary-Aware Attentive NetworkCited by: 14
Author(s): Yi Zhang, Shizhou Zhang, Ying Li, Yanning Zhang
Software Mentions: 1
Published: almost 4 years ago
10.3390/s21010011
Localization of Scattering Objects Using Neural NetworksCited by: 2
Author(s): Domonkos Haffner, Ferenc Izsák
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijms21010243
Imaging Inflammation and Infection in the Gastrointestinal TractCited by: 16
Author(s): Alex N. Frickenstein, Meredith Jones, Bahareh Behkam, Lacey R. McNally
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0091929
PASTEC: An Automatic Transposable Element Classification ToolCited by: 237
Author(s): Claire Hoede, Sandie Arnoux, Mark Moisset, Timothée Chaumier, Olivier Inizan, Véronique Jamilloux, Hadi Quesneville
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0109802
Visuospatial Tasks Affect Locomotor Control More than Nonspatial Tasks in Older PeopleCited by: 36
Author(s): Jasmine C. Menant, Daina L. Sturnieks, Matthew A. Brodie, Susan L. Smith, Stephen R. Lord
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pntd.0002134
Arginase Activity - A Marker of Disease Status in Patients with Visceral Leishmaniasis in EthiopiaCited by: 48
Author(s): Tamrat Abebe, Yegnasew Takele, Teklu Weldegebreal, Tom Cloke, Ellen I. Closs, Camille Corset, Asrat Hailu, Workagegnehu Hailu, Sisay Yifru, Karina Corware, Margaux Corset, Manuel Modolell, Markus Munder, Fabienne Tacchini‐Cottier, Ingrid Müller, Pascale Kropf
Software Mentions: 1
Published: over 11 years ago
10.3390/e23060641
Neural Estimator of Information for Time-Series Data with DependencyCited by: 4
Author(s): Sina Molavipour, Hamid Ghourchian, Germán Bassi, Mikael Skoglund
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pbio.1000543
Phenotypic Consequences of Copy Number Variation: Insights from Smith-Magenis and Potocki-Lupski Syndrome Mouse ModelsCited by: 131
Author(s): Guénola Ricard, Jéssica Molina, Jacqueline Chrast, Wenli Gu, Nele Gheldof, Sylvain Pradervand, Frédéric Schütz, Juan I. Young, James R. Lupski, Alexandre Reymond, Katherina Walz
Software Mentions: 1
Published: about 14 years ago
10.3389/fonc.2021.554205
A Fast Protocol for Multiparametric Characterisation of Diffusion in the Brain and Brain TumoursCited by: 1
Author(s): Ricardo Loução, Ana-Maria Oros-Peusquens, Karl‐Josef Langen, Hugo Alexandre Ferreira, N. Jon Shah
Software Mentions: 1
Published: about 3 years ago
10.1155/2011/345012
<i>Clostridium difficile</i>Infection and Proton Pump Inhibitor Use in Hospitalized Pediatric Cystic Fibrosis PatientsCited by: 14
Author(s): John F. Pohl, Raza Patel, Jeffery T. Zobell, Ellen Lin, E. Kent Korgenski, Kody Crowell, M. F. Mackay, Aleesha Richman, C.L. Larsen, Barbara A. Chatfield
Software Mentions: 1
Published: almost 14 years ago