Papers: 10.1186/s12859-021-04054-2

https://doi.org/10.1186/s12859-021-04054-2

CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data

Cited by: 13
Author(s): Yuting Dai, Aining Xu, Jianfeng Li, Liang Wu, Shanhe Yu, Jun Chen, Wei‐Li Zhao, Xiao Jian Sun, Jinyan Huang
Published: over 5 years ago

Software Mentions 17

bioconductor: CytoTree
Papers that mentioned: 1
Unlikely Science (0)
bioconductor: diffcyt
Differential discovery in high-dimensional cytometry via high-resolution clustering
Papers that mentioned: 18
Very Likely Science (100)
bioconductor: flowCore
flowCore: Basic structures for flow cytometry data
Papers that mentioned: 109
Very Likely Science (75)
bioconductor: FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
Papers that mentioned: 177
Very Likely Science (75)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: MetaCyto
MetaCyto: A package for meta-analysis of cytometry data
Papers that mentioned: 3
Very Likely Science (100)
bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
Very Likely Science (100)
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
pypi: diff
"You diff objects, you find out why they ain't the same."
Papers that mentioned: 33
Very Likely Science (65)
pypi: FlowCal
Flow Cytometry Calibration Library
Papers that mentioned: 10
Very Likely Science (100)
pypi: FlowIO
FlowIO is a Python library for reading / writing Flow Cytometry Standard (FCS) files
Papers that mentioned: 1
Very Likely Science (85)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62
Very Likely Science (65)
pypi: PhenoGraph
Graph-based clustering for high-dimensional single-cell data
Papers that mentioned: 96
Very Likely Science (100)
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
Very Likely Science (65)