pypi: Optimus | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1008982

Predicting mean ribosome load for 5’UTR of any length using deep learning
Cited by: 14
Author(s): Alexander Karollus, Žiga Avsec, Julien Gagneur
Software Mentions: 9
Published: about 3 years ago

Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome
Cited by: 45
Author(s): Samuel J. Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry, Monika Fleshner, Martha Hotz Vitaterna, Fred W. Turek
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.pntd.0006344

Experimental Chagas disease-induced perturbations of the fecal microbiome and metabolome
Cited by: 31
Author(s): Laura-Isobel McCall, Anupriya Tripathi, Fernando Vargas, Rob Knight, Pieter C. Dorrestein, Jair L. Siqueira-Neto
Software Mentions: 4
Published: about 6 years ago

10.1128/mSystems.00387-19

A Metabolome- and Metagenome-Wide Association Network Reveals Microbial Natural Products and Microbial Biotransformation Products from the Human Microbiota
Cited by: 23
Author(s): Liu Cao, Egor Shcherbin, Hosein Mohimani
Software Mentions: 2
Published: almost 5 years ago

10.5713/ajas.18.0973

Orally administered Lactobacillus casei exhibited several probiotic properties in artificially suckling rabbits
Cited by: 15
Author(s): Xuemei Shen, Hongxiao Cui, Xiu Rong Xu
Software Mentions: 1
Published: almost 4 years ago

10.5713/ajas.19.0140

Hot melt extruded-based nano zinc as an alternative to the pharmacological dose of ZnO in weanling piglets
Cited by: 9
Author(s): Seung Min Oh, Min Ju Kim, Abdolreza Hosseindoust, Kwang Yeol Kim, Yo Han Choi, Hyung Bin Ham, Sung Jun Hwang, Jun Hyung Lee, Hyun‐Jong Cho, Wei Soo Kang, B. J. Chae
Software Mentions: 1
Published: over 4 years ago

10.1186/s12859-017-1809-3

High-throughput PCR assay design for targeted resequencing using primerXL
Cited by: 13
Author(s): Steve Lefever, Filip Pattyn, Bram De Wilde, Frauke Coppieters, Sarah De Keulenaer, Jan Hellemans, Jo Vandesompele
Software Mentions: 1
Published: over 6 years ago

10.1186/1756-0500-3-185

Optimus Primer: A PCR enrichment primer design program for next-generation sequencing of human exonic regions
Cited by: 5
Author(s): Andrew Brown, Ken Sin Lo, Paul Guelpa, Mélissa Beaudoin, John D. Rioux, Jean‐Claude Tardif, Michael Phillips, Guillaume Lettre
Software Mentions: 1
Published: almost 14 years ago

10.1136/bjo.2007.130575

Age-related maculopathy and sunlight exposure evaluated by objective measurement
Cited by: 39
Author(s): Mayumi Hirakawa, Mizuki Tanaka, Yoshiyuki Tanaka, Akiko Okubo, C Koriyama, Masao Tsuji, Suminori Akiba, Kukizo Miyamoto, Greg G. Hillebrand, T. Yamashita, Taiji Sakamoto
Software Mentions: 1
Published: about 16 years ago

10.1186/s12944-016-0261-0

Maternal high fat intake affects the development and transcriptional profile of fetal intestine in late gestation using pig model
Cited by: 4
Author(s): Lianqiang Che, Peilin Liu, Zifeng Yang, Long Che, Liang Hu, Linlin Qin, Ru Wang, Zhengfeng Fang, Yan Lin, Shengyu Xu, Bin Feng, Jian Li, De Wu
Software Mentions: 1
Published: about 8 years ago

10.14814/phy2.12192

Nox-4 deletion reduces oxidative stress and injury by PKC-<i>α</i>-associated mechanisms in diabetic nephropathy
Cited by: 86
Author(s): Vicki Thallas‐Bonke, Jay C. Jha, Sara Gray, David Barit, Hermann Haller, Harald Schmidt, Melinda T. Coughlan, Mark E. Cooper, Josephine M. Forbes, Karin Jandeleit‐Dahm
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pgen.1003723

Deep Resequencing of GWAS Loci Identifies Rare Variants in CARD9, IL23R and RNF186 That Are Associated with Ulcerative Colitis
Cited by: 174
Author(s): Mélissa Beaudoin, Philippe Goyette, Gabrielle Boucher, Ken Sin Lo, Manuel A. Rivas, Christine Stevens, Azadeh Alikashani, Martin Ladouceur, David Ellinghaus, Leif Törkvist, Gautam Goel, Caroline Lagacé, Vito Annese, Alain Bitton, Jakob Begun, Steve Brant, Francesca Bresso, Judy H. Cho, Richard H. Duerr, Jonas Halfvarson, Dermot P. McGovern, Graham Radford‐Smith, Stefan Schreiber, L. Philip Schumm, Yashoda Sharma, Mark S. Silverberg, Rinse K. Weersma, Mauro D’Amato, Séverine Vermeire, André Franke, Guillaume Lettre, Ramnik J. Xavier, Mark J. Daly, John D. Rioux
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0069273

Cluster J Mycobacteriophages: Intron Splicing in Capsid and Tail Genes
Cited by: 27
Author(s): Welkin H. Pope, Deborah Jacobs-Sera, Aaron A. Best, Gregory W. Broussard, Pamela L. Connerly, Rebekah M. Dedrick, Timothy Kremer, Susan Offner, Amenawon H. Ogiefo, Marie C. Pizzorno, Kate Rockenbach, Daniel A. Russell, Emily L. Stowe, Joseph Stukey, Sarah A. Thibault, James F. Conway, Roger W. Hendrix, Graham F. Hatfull
Software Mentions: 1
Published: almost 11 years ago

10.1371/journal.pone.0101829

Environmental Enrichment Protects the Retina from Early Diabetic Damage in Adult Rats
Cited by: 20
Author(s): Damián Dorfman, Marcos Luis Aranda, María Florencia González Fleitas, Mónica S. Chianelli, Diego C. Fernandez, Pablo H. Sande, Ruth E. Rosenstein
Software Mentions: 1
Published: almost 10 years ago

10.1371/journal.pone.0157314

Dietary Nucleotides Supplementation Improves the Intestinal Development and Immune Function of Neonates with Intra-Uterine Growth Restriction in a Pig Model
Cited by: 44
Author(s): Lianqiang Che, Liang Hu, Yan Liu, Guangdong Bai, Peng Xie, Qin Xu, Ru Wang, Yuanfang Cheng, Hong Chen, Zhengfeng Fang, Yan Lin, Shengyu Xu, Bin Feng, Shuai Chen, De Wu
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0136637

Enriched Environment Protects the Optic Nerve from Early Diabetes-Induced Damage in Adult Rats
Cited by: 14
Author(s): Damián Dorfman, Marcos Luis Aranda, Ruth E. Rosenstein
Software Mentions: 1
Published: almost 9 years ago

10.1371/journal.pone.0010616

Differing Mechanisms Underlie Sexual Size-Dimorphism in Two Populations of a Sex-Changing Fish
Cited by: 23
Author(s): Mark I. McCormick, Christopher Ryen, Philip L. Munday, Stefan P. W. Walker
Software Mentions: 1
Published: about 14 years ago

10.3325/cmj.2019.60.290

Data by data, Big Data
Cited by: 3
Author(s): Branimir K. Hackenberger
Software Mentions: 1
Published: about 5 years ago

10.1242/dmm.031641

Superior cervical gangliectomy induces non-exudative age-related macular degeneration in mice
Cited by: 7
Author(s): Hernán Dieguez, Horacio E. Romeo, María Florencia González Fleitas, Marcos Luis Aranda, Georgia A. Milne, Ruth E. Rosenstein, Damián Dorfman
Software Mentions: 1
Published: over 7 years ago

10.3389/fpls.2019.00846

Assessing Specialized Metabolite Diversity in the Cosmopolitan Plant Genus Euphorbia L.
Cited by: 37
Author(s): Madeleine Ernst, Louis Félix Nothias, Justin J. J. van der Hooft, Ricardo R. Silva, C. Haris Saslis‐Lagoudakis, Olwen M. Grace, Karen Martinez-Swatson, Gustavo Hassemer, Luís Adriano Funez, Henrik Toft Simonsen, Marnix H. Medema, Dan Stærk, Niclas Nilsson, Paola Lovato, Pieter C. Dorrestein, Nina Rønsted
Software Mentions: 1
Published: almost 5 years ago

10.3389/fpsyg.2018.01800

Digital Storytelling in Early Childhood: Student Illustrations Shaping Social Interactions
Cited by: 25
Author(s): Ian O’Byrne, Katherine Houser, Ryan Stone, Mary White
Software Mentions: 1
Published: over 5 years ago

10.1155/2012/423612

Substance P Regulates Environmental Tobacco Smoke-Enhanced Tracheal Smooth Muscle Responsiveness in Mice
Cited by: 1
Author(s): Lan Xiao, Zhong-Xin Wu
Software Mentions: 1
Published: almost 12 years ago

10.1111/jcmm.15559

Role of CARD9 in inflammatory signal pathway of peritoneal macrophages in severe acute pancreatitis
Cited by: 6
Author(s): Jing Wang, Jing Tian, Yang‐huan He, Zhiwen Yang, Lin Wang, Yuexing Lai, Ping Xu
Software Mentions: 1
Published: almost 4 years ago

10.1098/rspb.2018.1307

Before platelets: the production of platelet-activating factor during growth and stress in a basal marine organism
Cited by: 17
Author(s): Ines Galtier d'Auriac, Robert A. Quinn, Heather Maughan, Louis‐Félix Nothias, Mark Little, Clifford A. Kapono, Ana Cobian, Brandon Reyes, Kevin Green, Steven D. Quistad, Matthieu Leray, Jennifer E. Smith, Pieter C. Dorrestein, Forest Rohwer, Dimitri D. Deheyn, Aaron C. Hartmann
Software Mentions: 1
Published: almost 6 years ago

10.5334/ijic.5494

An Integrated Care Strategy for Pre-schoolers with Suspected Developmental Disorders: The Optimus Co-design Project that has Made it to Regular Care
Cited by: 1
Author(s): Anna Sarkadi, Anton Dahlberg, Kajsa Leander, Moa Johansson, Johanna Zahlander, Anna Fäldt, Robert Kristiansson, Kine Johansen
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.8751

The cellular distribution of Na+/H+ exchanger regulatory factor 1 is determined by the PDZ-I domain and regulates the malignant progression of breast cancer
Cited by: 12
Author(s): Guangwei Du, Yanang Gu, Chengcheng Hao, Yong‐Guan Zhu, Junqi He, Wen Guo Jiang, Shan Cheng
Software Mentions: 1
Published: about 8 years ago

10.1186/s13023-016-0500-5

Improving diagnosis of inherited peripheral neuropathies through gene panel analysis
Cited by: 37
Author(s): Petra Laššuthová, Dana Šafka Brožková, Marcela Krůtová, Jana Neupauerová, Jana Haberlová, Radim Mazanec, Pavel Dřímal, Pavel Seeman
Software Mentions: 1
Published: almost 8 years ago

10.5713/ab.20.0663

Synergistic effect of exogenous multi-enzyme and phytase on growth performance, nutrients digestibility, blood metabolites, intestinal microflora and morphology in broilers fed corn-wheat-soybean meal diets
Cited by: 7
Author(s): Min-Ju Kim, S.L. Ingale, Abdolreza Hosseindoust, Youngin Choi, KwangYeol Kim, B. J. Chae
Software Mentions: 1
Published: almost 3 years ago

10.3390/nu8050258

A Maternal High-Energy Diet Promotes Intestinal Development and Intrauterine Growth of Offspring
Cited by: 13
Author(s): Peilin Liu, Long Che, Zhenguo Yang, Bin Feng, Lianqiang Che, Yan Lin, Zhengfeng Fang, Jian Li, De Wu
Software Mentions: 1
Published: about 8 years ago

10.3390/ani9040125

Effects of Fat Supplementation during Gestation on Reproductive Performance, Milk Composition of Sows and Intestinal Development of their Offspring
Cited by: 7
Author(s): Peng Xie, Guangdong Bai, Liang Hu, Liying Yan, Qin Xu, Ru Wang, Linlin Qin, Cheng Wu, Zhengfeng Fang, Yan Lin, Shengyu Xu, Jian Li, De Wu
Software Mentions: 1
Published: about 5 years ago

10.3390/ani10091537

Effects of Zinc Oxide and Arginine on the Intestinal Microbiota and Immune Status of Weaned Pigs Subjected to High Ambient Temperature
Cited by: 5
Author(s): Se Young Yoon, Soo Jin, Eun Seok Cho, Han Seo Ko, Jung‐Woo Choi, Jin-Soo Kim
Software Mentions: 1
Published: almost 4 years ago

10.3390/ani11092561

Low Birth Weight Disturbs the Intestinal Redox Status and Mitochondrial Morphology and Functions in Newborn Piglets
Cited by: 2
Author(s): Jiaojiao Chen, Yi Song, Shuai Chen, Bing Yu, Jun He, Xiangbing Mao, Zhiqing Huang, Junqiu Luo, Jie Yu, Yuheng Luo, Hui Yan, Ping Zheng
Software Mentions: 1
Published: almost 3 years ago

Ecosyste.ms: Papers

Projects: pypi: Optimus

Papers Mentioning Optimus 32