Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0229001

https://doi.org/10.1371/journal.pone.0229001

Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome

Cited by: 45
Author(s): Samuel J. Bowers, Fernando Vargas, Antonio González, Shannon He, Peng Jiang, Pieter C. Dorrestein, Rob Knight, Kenneth P. Wright, Christopher A. Lowry, Monika Fleshner, Martha Hotz Vitaterna, Fred W. Turek
Published: over 4 years ago

Software Mentions 6

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

cran: VSURF

Variable Selection Using Random Forests
Papers that mentioned: 32

pypi: Optimus

Optimus is a static site builder using Jinja2, webassets and Babel.
Papers that mentioned: 32

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779

pypi: scikit-bio

Data structures, algorithms and educational resources for bioinformatics.
Papers that mentioned: 41