Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008982

https://doi.org/10.1371/journal.pcbi.1008982

Predicting mean ribosome load for 5’UTR of any length using deep learning

Cited by: 14
Author(s): Alexander Karollus, Žiga Avsec, Julien Gagneur
Published: over 3 years ago

Software Mentions 9

cran: fasta

Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848

pypi: fasta

The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848

pypi: hyperopt

Distributed Asynchronous Hyperparameter Optimization
Papers that mentioned: 34

pypi: numpy

Fundamental package for array computing in Python
Papers that mentioned: 832

pypi: Optimus

Optimus is a static site builder using Jinja2, webassets and Babel.
Papers that mentioned: 32

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779

pypi: pandas

Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640

pypi: pybedtools

Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48

pypi: scikit-learn

A set of python modules for machine learning and data mining
Papers that mentioned: 2,431