pypi: Cactus | Projects | Ecosyste.ms: Papers

10.1007/s41114-018-0015-6

Computer algebra in gravity research
Cited by: 20
Author(s): Malcolm MacCallum
Software Mentions: 13
Published: over 6 years ago

Genotyping structural variants in pangenome graphs using the vg toolkit
Cited by: 136
Author(s): Glenn Hickey, David Heller, Jean Monlong, Jonas Andreas Sibbesen, Jouni Sirén, Jordan M. Eizenga, Eric T. Dawson, Erik Garrison, Adam M. Novak, Benedict Paten
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pcbi.1009040

A reaction-diffusion network model predicts a dual role of Cactus/IκB to regulate Dorsal/NFκB nuclear translocation in Drosophila
Cited by: 0
Author(s): Claudio D. T. Barros, Maira Arruda Cardoso, Paulo Mascarello Bisch, Helena Araujo, Francisco J. P. Lopes
Software Mentions: 4
Published: over 3 years ago

10.1186/s13059-019-1829-6

RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Cited by: 406
Author(s): Michael Alonge, Sebastian Soyk, S. Ramakrishnan, Xingang Wang, Sara Goodwin, Fritz J. Sedlazeck, Zachary B. Lippman, Michael C. Schatz
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2020.00829

Evolutionary History of the Marchantia polymorpha Complex
Cited by: 9
Author(s): Anna Malin Linde, Weerachon Sawangproh, Nils Cronberg, Péter Szövényi, Ulf Lagercrantz
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pgen.1009229

3D genome evolution and reorganization in the Drosophila melanogaster species group
Cited by: 24
Author(s): Nicole S. Torosin, Aparna Anand, Tirupathi Rao Golla, Weihuan Cao, Chris Ellison
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13015-018-0133-4

Coordinate systems for supergenomes
Cited by: 10
Author(s): Fabian Gärtner, Christian Höner zu Siederdissen, Lydia Müller, Peter F. Stadler
Software Mentions: 3
Published: about 6 years ago

10.1186/s12915-020-00822-3

Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps
Cited by: 22
Author(s): Fabrice Legeai, Bernardo F. Santos, Stéphanie Robin, Anthony Bretaudeau, Rebecca B. Dikow, Claire Lemaitre, Véronique Jouan, Marc Ravallec, Jean‐Michel Drezen, Denis Tagu, Frédéric Baudat, Gábor Gyapay, Xin Zhou, Shanlin Liu, Bruce A. Webb, Seán G. Brady, Anne Nathalie Volkoff
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0054178

Evolutionary, Structural and Functional Interplay of the IκB Family Members
Cited by: 22
Author(s): Shaherin Basith, Balachandran Manavalan, Vijayakumar Gosu, Sangdun Choi
Software Mentions: 3
Published: almost 12 years ago

10.12688/f1000research.19630.2

A strategy for building and using a human reference pangenome
Cited by: 5
Author(s): Bastien Llamas, Giuseppe Narzisi, Valérie Schneider, Peter A. Audano, Evan Biederstedt, Lon Blauvelt, Peter J. Bradbury, Xian Chang, Chen-Shan Chin, Arkarachai Fungtammasan, Wayne E. Clarke, Alan Cleary, Jana Ebler, Jordan Eizenga, Jonas Andreas Sibbesen, Charles Markello, Erik Garrison, Shilpa Garg, Glenn Hickey, Gerard R. Lazo, Michael Lin, Medhat Mahmoud, Tobias Marschall, Ilia Minkin, Jean Monlong, Rajeeva Musunuri, Sagayamary Sagayaradj, Adam M. Novak, Mikko Rautiainen, Allison Regier, Fritz J. Sedlazeck, Jouni Sirén, Yassine Souilmi, Justin Wagner, Travis Wrightsman, Toshiyuki Yokoyama, Qiandong Zeng, Justin M. Zook, Benedict Paten, Ben Busby
Software Mentions: 3
Published: over 3 years ago

10.1186/s12864-021-07984-6

Genome collinearity analysis illuminates the evolution of donkey chromosome 1 and horse chromosome 5 in perissodactyls: A comparative study
Cited by: 2
Author(s): Shaohua Li, Gaoping Zhao, Hongmei Han, Yunxia Li, Jun Li, Jinfeng Wang, Guifang Cao, Xihe Li
Software Mentions: 2
Published: about 3 years ago

10.1093/bioinformatics/btt128

HAL: a hierarchical format for storing and analyzing multiple genome alignments
Cited by: 143
Author(s): Glenn Hickey, Benedict Paten, Dent Earl, Daniel R. Zerbino, David Haussler
Software Mentions: 2
Published: over 11 years ago

10.1371/journal.pone.0241178

Identification of plastid genomic regions inferring species identity from de novo plastid genome assembly of 14 Korean-native Iris species (Iridaceae)
Cited by: 9
Author(s): Yang Jae Kang, Soonok Kim, Jung-Ho Lee, Hyosig Won, Gi-Heum Nam, Myounghai Kwak
Software Mentions: 2
Published: about 4 years ago

10.3390/ijms151018162

Towards Global QSAR Model Building for Acute Toxicity: Munro Database Case Study
Cited by: 33
Author(s): Swapnil Chavan, Ian A. Nicholls, Britt Karlsson, Annika M. Rosengren, Davide Ballabio, Viviana Consonni, Roberto Todeschini
Software Mentions: 2
Published: about 10 years ago

10.1093/gigascience/giaa047

halSynteny: a fast, easy-to-use conserved synteny block construction method for multiple whole-genome alignments
Cited by: 8
Author(s): Ksenia Krasheninnikova, Mark Diekhans, Joel Armstrong, Aleksei Dievskii, Benedict Paten, Stephen J. O’Brien
Software Mentions: 2
Published: over 4 years ago

10.1111/tan.14127

The <scp>HLA</scp> diversity of the Anthony Nolan register
Cited by: 10
Author(s): Gayle Leen, Jeremy E. Stein, James T. Robinson, H. Maldonado Torres, S. G. E. Marsh
Software Mentions: 2
Published: about 4 years ago

10.3389/fpls.2017.00786

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform
Cited by: 97
Author(s): Amy Marshall‐Colón, Stephen P. Long, Doug K. Allen, Gabrielle Allen, Daniel A. Beard, Bedřich Beneš, Susanne von Caemmerer, AJ Christensen, Donna Cox, John C. Hart, Peter M. Hirst, Kavya Kannan, Daniel S. Katz, Jonathan P. Lynch, Andrew J. Millar, Balaji Panneerselvam, Nathan D. Price, Przemysław Prusinkiewicz, David Raila, Rachel G Shekar, Stuti Shrivastava, Diwakar Shukla, V. Srinivasan, Mark Stitt, Matthew J. Turk, Eberhard O. Voit, Yu Wang, Xinyou Yin, Xin Guang Zhu
Software Mentions: 2
Published: over 7 years ago

10.1093/bioinformatics/bty614

Approximate, simultaneous comparison of microbial genome architectures via syntenic anchoring of quiver representations
Cited by: 5
Author(s): Alex N. Salazar, Thomas Abeel
Software Mentions: 2
Published: about 6 years ago

10.1007/s41114-017-0008-x

Rotating stars in relativity
Cited by: 134
Author(s): Vasileios Paschalidis, Nikolaos Stergioulas
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pgen.1009544

Light-dependent N-end rule-mediated disruption of protein function in Saccharomyces cerevisiae and Drosophila melanogaster
Cited by: 3
Author(s): Leslie M. Stevens, Goheun Kim, Theodora Koromila, John W. Steele, James McGehee, Angelike Stathopoulos, David Stein
Software Mentions: 2
Published: over 3 years ago

10.1038/srep46459

TmCactin plays an important role in Gram-negative and -positive bacterial infection by regulating expression of 7 AMP genes in Tenebrio molitor
Cited by: 31
Author(s): Yong Hun Jo, Yu Jung Kim, Ki Beom Park, Jeong Hwan Seong, Soo Gon Kim, Soyi Park, Mi Young Noh, Yong Seok Lee
Software Mentions: 1
Published: over 7 years ago

10.1007/s41114-016-0001-9

Extraction of gravitational waves in numerical relativity
Cited by: 78
Author(s): Nigel T. Bishop, Luciano Rezzolla
Software Mentions: 1
Published: about 8 years ago

10.1007/lrr-2015-1

Exploring New Physics Frontiers Through Numerical Relativity
Cited by: 60
Author(s): Vítor Cardoso, Leonardo Gualtieri, Carlos Herdeiro, Ulrich Sperhake
Software Mentions: 1
Published: about 9 years ago

10.1186/s13071-017-2109-5

Immune resistance and tolerance strategies in malaria vector and non-vector mosquitoes
Cited by: 19
Author(s): Tibebu Habtewold, Zoe Groom, George K. Christophides
Software Mentions: 1
Published: over 7 years ago

10.1038/s41598-021-83956-w

High-resolution shock-capturing numerical simulations of three-phase immiscible fluids from the unsaturated to the saturated zone
Cited by: 5
Author(s): Alessandra Feo, Fulvio Celico
Software Mentions: 1
Published: over 3 years ago

10.1186/s12864-020-6569-1

GSAlign: an efficient sequence alignment tool for intra-species genomes
Cited by: 26
Author(s): Hsin-Nan Lin, Wen-Lian Hsu
Software Mentions: 1
Published: over 4 years ago

10.1186/s13059-015-0670-9

Split-alignment of genomes finds orthologies more accurately
Cited by: 81
Author(s): Martin C. Frith, Risa Karakida Kawaguchi
Software Mentions: 1
Published: over 9 years ago

10.1186/1471-2105-12-419

MAPI: towards the integrated exploitation of bioinformatics Web Services
Cited by: 2
Author(s): Salvador Luna Ramírez, Johan Karlsson, Oswaldo Trelles
Software Mentions: 1
Published: about 13 years ago

10.1186/1471-2105-15-99

Genome alignment with graph data structures: a comparison
Cited by: 35
Author(s): Birte Kehr, Kathrin Trappe, Manuel Holtgrewe, Knut Reinert
Software Mentions: 1
Published: over 10 years ago

10.1093/gbe/evab212

A Chromosome-Level Genome Assembly of the Reed Warbler (<i>Acrocephalus scirpaceus</i>)
Cited by: 3
Author(s): Camilla Lo Cascio Sætre, Fabrice Eroukhmanoff, Katja Rönkä, Edward Kluen, Rose Thorogood, James Torrance, Alan S. Tracey, William Chow, Sarah Pelan, Kerstin Howe, Kjetill S. Jakobsen, Ole K. Tørresen
Software Mentions: 1
Published: about 3 years ago

10.1093/gigascience/giy025

Innovative assembly strategy contributes to understanding the evolution and conservation genetics of the endangered Solenodon paradoxus from the island of Hispaniola
Cited by: 11
Author(s): Kirill Grigorev, Sergei Kliver, Pavel Dobrynin, Aleksey Komissarov, Walter Wolfsberger, Ksenia Krasheninnikova, Yashira M. Afanador-Hernández, Adam L. Brandt, Liz A. Paulino, Rosanna Carreras, Luis E. Rodríguez, Adrell Núñez, Jessica R. Brandt, Filipe Silva, J. David Hernández-Martich, Audrey J. Majeske, Agostinho Antunes, Alfred L. Roca, Stephen J. O’Brien, Juan Carlos Martínez‐Cruzado, Tarás K. Oleksyk
Software Mentions: 1
Published: over 6 years ago

10.1089/hum.2018.075

Combined Skin and Muscle DNA Priming Provides Enhanced Humoral Responses to a Human Immunodeficency Virus Type 1 Clade C Envelope Vaccine
Cited by: 7
Author(s): Hannah Cheeseman, Suzanne Day, Leon R. McFarlane, S. L. Fleck, Antonia Grace Miller, Tom Cole, Nelson Sousa-Santos, Alethea Cope, Deniz Cizmeci, Monica Tolazzi, Edith Hwekwete, Drew Hannaman, Sven Kratochvil, Paul F. McKay, Amy W. Chung, Stephen J. Kent, Adrian Cook, Gabriella Scarlatti, Sonya Abraham, Béhazine Combadière, Sheena McCormack, David Lewis, Robin J. Shattock
Software Mentions: 1
Published: about 6 years ago

Ecosyste.ms: Papers

Projects: pypi: Cactus

Papers Mentioning Cactus 32